Geometry of gene expression dynamics

Bioinformatics

Volumn 18, Issue 9, 2002, Pages 1176-1183

  Rifkin, S A ^a   Kim, J ^a,b  

^a YALE UNIVERSITY   (United States)

^b YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

ARTICLE; CELL CYCLE; CHAOTIC DYNAMICS; CONTROLLED STUDY; DATA ANALYSIS; FOURIER ANALYSIS; GENE EXPRESSION; GEOMETRY; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; STANDARD; THEORY; TIME;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 0036739284     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.9.1176     Document Type: Article

References (19)

1. Abarbanel,H.D.I. et al. (1993) The analysis of observed chaotic data in physical systems. Rev. Mod. Phys., 65, 1331-1392.
2. Boguski,M.S. (1999) Biosequence exegesis. Science, 286, 453-455.
3. Cho,R.J. et al. (1998) A genome-wide transcriptional analysis of the mitotic cell cycle. Mol. Cell, 2, 65-73.
4. Delbrück,M. (1949) Unités Biologiques Douées de Continuité Génétique. CNRS, Paris.
5. DeRisi,J.L. et al. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 278, 680-686.
6. Friedman,J.H. and Tukey,J.W. (1974) A projection pursuit algorithm for exploratory data analysis. IEEE Transactions on Computers, c23, 881-890.
7. Holter,N.S. et al. (2000) Fundamental patterns underlying gene expression profiles: simplicity from complexity. Proc. Natl Acad. Sci. USA, 97, 8409-8414.
8. Holter,N.S. et al. (2001) Dynamic modeling of gene expression data. Proc. Natl Acad. Sci. USA, 98, 1693-1698.
9. Klevecz,R.R. and Dowse,H.B. (2000) Tuning in the trascriptome: basins of attraction in the yeast cell cycle. Cell Prolif., 33, 209-218.
10. Packard,N.H. et al. (1980) Geometry from a time series. Phys. Rev. Lett., 45, 712-714.
11. Rifkin,S.A. et al. (2000) Constraint structure analysis of gene expression. Func. Integr. Genomics, 1, 174-185.
12. Schena,M. et al. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470.
13. Seber,G.A.F. (1984) Multivariate Observations. Wiley, New York.
14. Spellman,P.T. et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell, 9, 3273-3297.
15. Takens,F. (1981) Detecting strange attractors in turbulence. Lecture Notes Math., 898, 366.
16. Thom,R. (1983) Mathematical Models of Morphogenesis, Translated by Brookes, W.M. & Rand,D., Wiley, New York.
17. Waddington,C.H. (1939) An Introduction to Modern Genetics. Macmillan, New York.
18. White,K.P. et al. (1999) Microarray analysis of Drosophila development during metamorphosis. Science, 286, 2179-2184.
19. Wolfram,S. (1999) The Mathematica Book, 4th edition, Cambridge University Press, Cambridge.