Dynamic architecture of the yeast cell cycle uncovered by wavelet decomposition of expression microarray data

Functional and Integrative Genomics

Volumn 1, Issue 3, 2000, Pages 186-192

  Klevecz, Robert R ^a  

^a CITY OF HOPE NATIONAL MEDICAL CENTER   (United States)

Author keywords

Attractor; Cell cycle; Microarrays; Wavelets

Indexed keywords

MESSENGER RNA;

ARTICLE; CELL CYCLE; CYTOLOGY; DNA MICROARRAY; DOWN REGULATION; GENE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; METHODOLOGY; PERIODICITY; PHYSIOLOGY; THEORETICAL MODEL; TIME; UPREGULATION; YEAST;

CELL CYCLE; DOWN-REGULATION; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, FUNGAL; GENES, CDC; MODELS, THEORETICAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PERIODICITY; RNA, MESSENGER; TIME FACTORS; UP-REGULATION; YEASTS;

EID: 0034334515     PISSN: 1438793X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s101420000027     Document Type: Article

References (15)

1. Alt S, Ringo J, Talyn B, Bray W, Dowse H (1998) The period gene controls courtship song cycles in Drosophila melanogaster. Anim Behav 56:87-98
2. Bolen JL, Durán O, Klevecz RR (1993) Amplification and damping of deterministic noise in coupled cellular arrays. Physica D 67:245-256
3. Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, Wodicka L, Wolfsberg TG, Gabrielian AE, Landsman D, Lockhart DJ, Davis RW (1998) A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell 2:65-73
4. Daubechies I (1992) Ten lectures on wavelets. Society for Industrial and Applied Mathematics, Philadelphia
5. DeRisi JL, Iyer VR, Brown PO (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278:680-686
6. Klevecz RR (1998) Phenotypic heterogeneity and genotypic instability in coupled cellular arrays. Physica D 124:1-10
7. Klevecz RR, Dowse HB (2000) Tuning in the transcriptome. Cell Prolif 33:221-230
8. Klevecz RR, Kauffman SA, Shymko RM (1984) Cellular clocks and oscillators. In: Danielli J (ed) International Review of Cytology, vol 86. Academic Press, New York, pp 97-128
9. Klevecz RR, Bolen J, Durán O (1992) Self-organization in biological tissues: analysis of asynchronous and synchronous periodicity, turbulence and synchronous chaos emergent in coupled chaotic arrays. Int J Bifurcation Chaos 2:941-953
10. Ott E, Grebogi C, Yorke JA (1990) Controlling chaos. Phys Rev Lett 64:1196-1199
11. Shinbrot T, Grebogi C, Ott E, Yorke JA (1993) Using small perturbations to control chaos. Nature 363:441-447
12. Shymko RM, Klevecz RR, Kauffman SA (1984) The cell cycle as an oscillatory system. In: Edmunds L (ed) Cell cycle clocks. Dekker, New York, pp 273-293
13. Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein D, Futcher B (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 9:3273-3297
14. Velculescu VE, Zhang L, Zhou W, Vogelstein J, Basrai MA, Bassett DE Jr, Hieter P, Vogelstein B, Kinzler KW (1997) Characterization of the yeast transcriptome. Cell 88:243-251
15. Wodicka L, Dong H, Mittmann M, Ho MH, Lockhart DJ (1997) Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat Biotechnol 15:1359-67