Investigating a hierarchy of eulerian closure models for scalar transfer inside forested canopies

Boundary-Layer Meteorology

Volumn 128, Issue 1, 2008, Pages 1-32

  Juang, Jehn Yih ^a,b   Katul, Gabriel G ^a,c   Siqueira, Mario B ^a,d   Stoy, Paul C ^a,e   McCarthy, Heather R ^a,f  

^a DUKE UNIVERSITY   (United States)

^b NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^c Duke University   (United States)

^d UNIVERSITY OF BRASILIA   (Brazil)

^e UNIVERSITY OF EDINBURGH   (United Kingdom)

^f UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Canopy turbulence; Closure models; Net ecosystem CO2 exchange; Scalar transfer; Stratified canopy flows

Indexed keywords

ATMOSPHERIC TEMPERATURE; CARBON DIOXIDE; FORESTRY; HEAT FLUX; THERMAL STRATIFICATION; TURBULENCE MODELS; VEGETATION; WATER VAPOR;

EDDY-COVARIANCE MEASUREMENTS; SCALAR FLUXES; STRATIFIED CANOPY FLOWS; WELL-MIXED ASSUMPTION (WMA);

ATMOSPHERIC TURBULENCE;

ATMOSPHERIC TEMPERATURE; ATMOSPHERIC TURBULENCE; CARBON DIOXIDE; FORESTRY; HEAT FLUX; THERMAL STRATIFICATION; TURBULENCE MODELS; VEGETATION; WATER VAPOR;

CARBON DIOXIDE; EDDY COVARIANCE; EULERIAN ANALYSIS; FLUX MEASUREMENT; FOREST CANOPY; HEAT TRANSFER; MICROCLIMATE; NET ECOSYSTEM EXCHANGE; SEASONAL VARIATION; SENSIBLE HEAT FLUX; WATER VAPOR;

CARBON DIOXIDE; FOREST CANOPY; MICROCLIMATES; PLANTS; SENSIBLE HEAT; TEMPERATURE; TURBULENCE; WATER VAPOR;

DURHAM [NORTH CAROLINA]; NORTH AMERICA; NORTH CAROLINA; UNITED STATES;

PINUS TAEDA;

EID: 42449160892     PISSN: 00068314     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10546-008-9273-2     Document Type: Article

References (78)

1. 2 exchange to the canopy: A generalized model of forest photosynthesis compared with measurements by eddy correlation. Oecologia 106:257-265
2. Andre JC, Lacarrere P, Traore K (1981) Pressure effects on triple correlations in turbulent convective flows. Turbulent shear flows III. Springer-Verlag, Berlin, pp 243-252
3. 2 and sensible heat flux densities and scalar profiles over and within a soybean canopy. Boundary-Layer Meteorol 61:113-144
4. Baldocchi D, Meyers T (1998) On using eco-physiological, micrometeorological and biogeochemical theory to evaluate carbon dioxide, water vapour and trace gas fluxes over vegetation: A perspetive. Agric Forest Meteorol 90:1-25
5. Baldocchi DJ, Vogel C, Hall B (1997) Seasonal variation of carbon dioxide exchange rates above and below a boreal jack pine forest. Agric Forest Meteorol 83:147-170
6. Baldocchi DD, Falge E, Gu L, Olson R, Hollinger D, Running S, Anthoni P, Bernhofer C, Davis K, Fuentes J, Goldstein A, Katul G, Law B, Lee X, Malhi Y, Meyers T, Munger JW, Oechel W, Pilegaard K, Schmid HP, Valentini R, Verma S, Vesala T, Wilson K, Wofsy S (2001) FLUXNET: A new tool to study the temporal and spatial variability of ecosystem-scale carbon dioxide, water vapour and energy flux densities. Bull Amer Meteorol Soc 82:2415-2435
7. Ball JT, Woodrow IE, Berry JA (1987) A model predicting stomatal conductance and its contribution to the control of photosynthesis under different environmental conditions. In: Biggins J (eds) Progress in photosynthesis research. Martinus Nijhoff, Amsterdam Netherlands, pp 221-224
8. Brutsaert W (1975) On a derivable formula for long-wave radiation from clear skies. Water Resour Res 11:742-744
9. Butnor JR, Johnsen KH (2004) Calibrating soil respiration measures with a dynamic flux apparatus using artificial soil media of varying porosity. Eur J Soil Sci 55:639-647
10. Butnor JR, Johnsen KH, Oren R (2003) Reduction of forest floor respiration by fertilization on both carbon dioxide-enriched and reference 17-year-old loblolly pine stands. Global Change Biol 9:849-861
11. Campbell GS (1986) Extinction coefficients for radiation in plant canopies calculated using an ellipsoidal inclination angle distribution. Agric Forest Meteorol 36:317-321
12. Campbell GS, Norman JM (1998) An introduction to environmental biophysics. Springer-Verlag, New York, p 307
13. Collatz GJ, Ball JT, Crivet C, Berry JA (1991) Physiological and environmental regulation of stomatal conductance, photosynthesis and transpiration: A model that Includes a laminar boundary layer. Agric Forest Meteorol 54:107-136
14. De Pury DGG, Farquhar GD (1997) Simple scaling of photosynthesis from leaves to canopies without the errors of big-leaf models. Plant Cell Environ 20:537-557
15. Detto M, Katul GG (2007) Simplified expressions for adjusting higher-order turbulent statistics obtained from open path gas analyzers. Boundary-Layer Meteorol 122:205-216
16. 2 exchange and water status in the canopy affected. Plant Cell Environ 22:461-472
17. 2 assimilation and stomatal limitations in a Pinus taeda canopy. Tree Physiol 20:435-445
18. Erbs DG, Klein SA, Duffie JA (1982) Estimation of the diffuse radiation fraction for hourly, daily and monthly average global radiation. Sol Energy 28:293
19. 3 species. Planta 149:79-90
20. Goudriaan J, van Laar HH (1994) Modelling potential crop growth processes. Kluwer Academic Publishers, Dordrecht, p 256
21. Gu L, Shugart HH, Fuentes JD, Black TA, Shewchuk SR (1999) Micrometeorology, biophysical exchanges and NEE decomposition in a two-story boreal forest-development and test of an intergrated model. Agric Forest Meteorol 94: 123-148
22. Jackson PS (1981) On the displacement height in the logarithmic velocity profile. J Fluid Mech 111:15-25
23. 2 concentration and air temperature profiles using inverse methods. J Geophys Res-Atmos 111:D08S05
24. Juang J-Y, Katul GG, Porporato A, Stoy PC, Siqueira M, Detto M, Kim H-S, Oren R (2007a) Eco-hydrological controls on summertime convective rainfall triggers. Global Change Biol 13(4):887-896
25. Juang J-Y, Porporato A, Stoy PC, Siqueira MBS, Oishi CA, Detto M, Kim H-S, Katul GG (2007b) Hydrologic and atmospheric controls on initiation of convective precipitation events. Water Resour Res 43:W03421
26. Kaimal JC, Finnigan JJ (1994) Atmospheric boundary layer flows: Their structure and measurements. Oxford University Press, 289 pp
27. Katul GG, Albertson JD (1998) An investigation of higher-order closure model for a forested canopy. Boundary-Layer Meteorol 89:47-74
28. Katul GG, Chang WH (1999) Principal length scales in second-order closure models for canopy turbulence. J Appl Meteorol 38:1631-1643
29. Katul GG, Leuning R, Oren R (2003) Relationship between plant hydraulic and biochemical properties derived from a steady-state coupled water and carbon transport model: Plant Cell Environ 26:339-350
30. Katul GG, Mahrt L, Poggi D, Sanz C (2004) One and two equation models for canopy turbulence. Boundary-Layer Meteorol 113:91-109
31. Kirschbaum MUF, Küppers M, Schneider HGC, Noe S (1998) Modelling photosynthesis in fluctuating light with inclusion of stomatal conductance, biochemical activation and pools of key photosynthetic intermediates. Planta 204:16-26
32. 2 and water vapour turbulent flux distributions within a forest canopy. J Geophys Res Atmos 105(D21):26333-26351
33. 2 exchange by a coupled Eulerian-Langrangian approach. Boundary-Layer Meteorol 95:91-122
34. Lai C-T, Katul GG, Butnor JR, Siqueira M, Ellsworth DS, Maier C, Johnsen KH, McKeand S, Oren R (2002a) Modeling the limits on the response of net carbon exchange to fertilization in a southeastern pine forest. Plant Cell Environ 25:1095-1119
35. Lai C-T, Katul GG, Butnor J, Ellsworth D, Oren R (2002b) Modelling night-time ecosystem respiration by a constrained source optimization method. Global Change Biol8: 124-141
36. Leuning R, Kelliher FM, De Pury DGG, Schulze E-D (1995) Leaf nitrogen, photosynthesis, conductance and transpiration: Scaling from leaves to canopies. Plant Cell Environ 18:1183-1200
37. Leuning R (2000) Estimation of scalar sources/sink distributions in plant canopies using Lagrangian dispersion analysis: Corrections for atmospheric stability and comparison with a multilayer canopy model. Boundary-Layer Meteorol 96:293-314
38. Liu J, Black TA, Novak MD (1996) E-epsilon modeling of turbulent air flow downwind of a model forest edge. Boundary-Layer Meteorol 77:21-44
39. 2 enrichment experiment and eddy-covariance measurements. Ecol Appl 11:239-252
40. Malhi Y, Nobre AD, Grace J, Kruijt B, Pereira MGP, Culf A, Scott S (1998) Carbon dioxide transfer over a Central Amazonian rain forest. J Geophys Res Atmos 103:31593-31612
41. Massman WJ, Weil JC (1999) An analytical one-dimensional second-order closure model of turbulence statistics and the Lagrangian time scale within and above plant canopies of arbitrary structure. Boundary-Layer Meteorol 91:81-107
42. 2]-induced enhancement of productivity and partitioning among aboveground carbon pools. Proc Natl Acad Sci USA 103:19356-19361
43. 2 atmosphere. J Geophys Res Atmos 111:D15103
44. 2. Global Change Biol 13:2479-2497
45. Mellor G (1973) Analytic prediction of the properties of stratified planetary boundary layer. J Atmos Sci 30:1061-1069
46. Meyers T, Paw UKT (1986) Testing of a higher-order closure model for modeling airflow within and above plant canopies. Boundary-Layer Meteorol 37:297-311
47. Meyers T, Paw UKT (1987) Modeling the plant canopy micrometeorology with higher-order closure principles. Agric Forest Meteorol 41:143-163
48. 2 in FACE. Oecologia 122:163-174
49. 2. Oecologia 126:487-499
50. 3 plants. Ecol Model 80:205-235
51. Oren R, Ewers B, Todd P, Phillips N, Katul GG (1998) Water balance delineates the soil layer in which moisture affects canopy conductance. Ecol Appl 8:990-1002
52. 2 efflux in a loblolly pine plantation and a nearby oak-hickory forest. Global Change Biol 11: 1-14
53. Pataki DE, Oren R (2003) Species differences in stomatal control of water loss at the canopy scale in a mature bottomland deciduous forest. Adv Water Resour 26(12):1267-1278
54. Pataki DE, Oren R, Tissue D (1998) Elevated carbon dioxide does not affect average canopy stomatal conductance of Pinus taeda L. Oecologia 127:549-559
55. Penman HL (1948) Natural evaporation from open water, bare soil and grass. Proc Roy Soc London Ser A 193:120-146
56. Poggi D, Katul GG, Albertson JD (2004) Momentum transfer and turbulent kinetic energy budgets within a dense model canopy. Boundary-Layer Meteorol 111:589-614
57. Raupach MR (1988) Canopy transport processes. In: Steffen WL, Denmead OT (eds) Flow and transport in the natural environment: Advances and applications. Springer-Verlag, New York, pp 95-127
58. Raupach MR (1989) A practical Lagrangian method for relating scalar concentrations to source distributions in vegetation canopies. Quart J Roy Meteorol Soc 115:609-632
59. 2 atmosphere alters carbon assimilation and allocation in a pine forest ecosystem. Global Change Biol 9:1378-1400
60. Shaw RH, Hartog GD, Neumann HH (1988) Influence of foliar density and thermal stability on profiles of Reynolds stress and turbulence intensity in a deciduous forest. Boundary-Layer Meteorol 45(4):391-409
61. Simon E, Meixner FX, Ganzeveld L, Kesselmeier J (2005a) Coupled carbon-water exchange of the Amazon rain forest, I. Model description, parameterization and sensitivity analysis. Biogeosciences 2:231-253
62. 2, isoprene and ozone at a remote site in Rondónia. Biogeosciences 2: 255-275
63. Siqueira M, Katul G (2002) Estimating heat sources and fluxes in thermally stratified canopy flows using higher-order closure models. Boundary-Layer Meteorol 103:125-142
64. Siqueira M, Kutal GG, Lai C-T (2002) Quantifying net ecosystem exchange by multilevel ecophysiological and turbulent transport models. Adv Water Resour 25:1357-1366
65. Spitters CJT, Toussaint HAJM, Goudriaan J (1986) Separating the diffuse and direct component of global radiation and its implications for modelling canopy photosynthesis. Part I. Components of incoming radiation. Agric Forest Meteorol 38:225-237
66. Spitters CJT (1986) Separating the diffuse and direct component of global radiation and its implications for modelling canopy photosynthesis. Part II. Calculation of canopy photosynthesis. Agric Forest Meteorol 38:238-241
67. Stenberg P (1998) Implications of shoot structure on the rate of photosynthesis at different levels in a coniferous canopy using a model incorporating grouping and penumbra. Funct Ecol. 12:82-91
68. Stoy P, Katul GG, Siqueira MBS, Juang J-Y, McCarthy HR, Kim H-S, Oishi C, Oren R (2005) Variability in net ecosystem exchange from hourly to inter-annual time scales at adjacent pine and hardwood forests: A wavelet analysis. Tree Physiol 25:887-902
69. Stull RB (1988) An introduction to boundary layer meteorology. Kluwer Academic Publishers Group, Dordrecht, p 666
70. Su H-B, Paw UKT, Shaw RH (1996) Development of a coupled leaf and canopy model for the simulation of plant-atmosphere interaction. J Appl Meteorol 35:733-748
71. Thom AS (1971) Momentum absorption by vegetation. Quart J Roy Meteorol Soc 97:414-428
72. Wang YP, Leuning R (1998) A two-leaf model for canopy conductance, photosynthesis and partitioning of available energy I: Model description and comparison with a multi-layered model. Agric Forest Meteorol 91:89-111
73. Webb EK, Pearman GI, Leuning R (1980) Correction of flux measurements for density effects due to heat and water vapour transfer. Quart J Roy Meteorol Soc 106:85-100
74. Weiss A, Norman JM (1985) Partitioning solar radiation into direct and diffuse, visible and near-infrared components. Agric Forest Meteorol 34:205-213
75. Williams M, Rastetter EB, Fernades DN, Goulden MLC, Wofsy S, Shaver GR, Meillo JM, Munger JW, Fan SM, Nadelhoffer KJ (1996) Modeling the soil-plant-atmosphere continuum in a Quercus-Acerstand at Harvard forest: The regulation of stomatal conductance by light, nitrogen and soil/plant hydraulic properties. Plant Cell Environ 19:911-927
76. Williams M, Malhi Y, Nobre AD, Rastetter EB, Grace J, Pereira MGP (1998) Seasonal variation in net carbon exchange and evapotranspiration in a Brazilian rain forest: A modelling analysis. Plant Cell Environ 21:953-968
77. Wilson JD et al (1989) Turbulent transport within the plant canopy. In: Blackman TA (eds) Estimation of areal evapotranspiration. IAHS Pub., Gentbrugge, Belgium, pp 43-80
78. Wilson NR, Shaw RH (1977) A higher order closure model for canopy flow. J Appl Meteorol 16:1198-1205