Activity assay of membrane transport proteins

Acta Biochimica et Biophysica Sinica

Volumn 40, Issue 4, 2008, Pages 269-277

  Xie, Hao ^a  

^a WUHAN UNIVERSITY OF TECHNOLOGY   (China)

Author keywords

Activity assay; Membrane transport protein; Protein ligand interaction

Indexed keywords

CARRIER PROTEIN;

BIOLOGICAL MODEL; CHANNEL GATING; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; METABOLISM; METHODOLOGY; PHYSIOLOGY; REVIEW;

CHEMISTRY, ANALYTICAL; COMPUTER SIMULATION; ION CHANNEL GATING; MEMBRANE TRANSPORT PROTEINS; MODELS, BIOLOGICAL; MODELS, CHEMICAL; MODELS, MOLECULAR;

EID: 42449139531     PISSN: 16729145     EISSN: 17457270     Source Type: Journal    
DOI: 10.1111/j.1745-7270.2008.00400.x     Document Type: Article

References (67)

1. Wallin E, von Heijne G. Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci 1998, 7 : 1029 1038.
2. Ahram M, Litou ZI, Fang R, Al-Tawallbeh G. Estimation of membrane proteins in the human proteome. In Silico Biol 2006, 6 : 379 386.
3. Drews J. Drug discovery: a historical perspective. Science 2000, 287 : 1960 1964.
4. Kiefer H. In vitro folding of alpha-helical membrane proteins. Biochim Biophys Acta 2003, 1610 : 57 62.
5. Moss GP for the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB). Classification of membrane transport proteins: Introduction. Available at http://www.chem.qmul.ac.uk/iubmb/ mtp/intro.html.
6. Basting D, Lehner I, Lorch M, Glaubitz C. Investigating transport proteins by solid state NMR. Naunyn Schmiedebergs Arch Pharmacol 2006, 372 : 451 464.
7. Cole ST, Brosch R, Parkhill J, Garnier T, Churcher C, Harris D, Gordon SV et al. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 1998, 393 : 537 544.
8. McClelland M, Sanderson KE, Spieth J, Clifton SW, Latreille P, Courtney L, Porwollik S et al. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 2001, 413 : 852 856.
9. Paulsen IT, Sliwinski MK, Saier MH Jr. Microbial genome analyses: global comparisons of transport capabilities based on phylogenies, bioenergetics and substrate specificities. J Mol Biol 1998, 277 : 573 592.
10. Guan L, Kaback HR. Lessons from lactose permease. Annu Rev Biophys Biomol Struct 2006, 35 : 67 91.
11. Baldwin SA, McConkey GA, Cass CE, Young JD. Nucleoside transport as a potential target for chemotherapy in malaria. Curr Pharm Des 2007, 13 : 569 580.
12. Dahl SG, Sylte I, Ravna AW. Structures and models of transporter proteins. J Pharmacol Exp Ther 2004, 309 : 853 860.
13. Ward A, Sanderson NM, O'Reilly J, Rutherford NG, Poolman B, Henderson PJF. The amplified expression, identification, purification, assay, and properties of hexahistidine-tagged bacterial membrane transport proteins. In : Baldwin SA, ed. Membrane Transport - A Practical Approach. Oxford : Oxford University Press 1999.
14. Nørholm MH, Dandanell G. Specificity and topology of the Es-cherichia coli xanthosine permease, a representative of the NHS subfamily of the major facilitator superfamily. J Bacteriol 2001, 183 : 4900 4904.
15. Xie H, Patching SG, Gallagher MP, Litherland GJ, Brough AR, Venter H, Yao SY et al. Purification and properties of the Escherichia coli nucleoside transporter NupG, a paradigm for a major facilitator transporter sub-family. Mol Membr Biol 2004, 21 : 323 336.
16. Mohanty AK, Wiener MC. Membrane protein expression and production: effects of polyhistidine tag length and position. Protein Expr Purif 2004, 33 : 311 325.
17. Bai X, Chen X, Fen Z, Wu D, Hou K, Cheng G, Peng L. Expression of EGFP-SDCT1 fusion protein, subcellular localization signal analysis, tissue distribution and electrophysiological function study. Sci China C Life Sci 2004, 47 : 530 539.
18. Rogers S, Chandler JD, Clarke AL, Petrou S, Best JD. Glucose trans-porter GLUT12 - functional characterization in Xenopus laevis oocytes. Biochem Biophys Res Commun 2003, 308 : 422 426.
19. Futai M. Orientation of membrane vesicles from Escherichia coli prepared by different procedures. J Membr Biol 1974, 15 : 15 28.
20. Hugenholtz J, Hong JS, Kaback HR. ATP-driven active transport in right-side-out bacterial membrane vesicles. Proc Natl Acad Sci USA 1981, 78 : 3446 3449.
21. Hanning I, Baumgarten K, Schott K, Heldt HW. Oxaloacetate transport into plant mitochondria. Plant Physiol 1999, 119 : 1025 1031.
22. Kore-eda S, Yamashita T, Kanai R. Induction of light dependent pyruvate transport into chloroplasts of Mesembryanthemum crystallinum by salt stress. Plant Cell Physiol 1996, 37 : 257 262.
23. Ie Maire M., Champeil P, Moller JV. Interaction of membrane proteins and lipids with solubilizing detergents. Biochim Biophys Acta 2000, 1508 : 86 111.
24. Jarvis SM. Assay of membrane transport in cells and membrane vesicles. In : Baldwin SA, ed. Membrane Transport - A Practical Approach. Oxford : Oxford University Press 1999.
25. Chao Y, Fu D. Kinetic study of the antiport mechanism of an Escherichia coli zinc transporter, ZitB. J Biol Chem 2004, 279 : 12043 12050.
26. Woebking B, Reuter G, Shilling RA, Velamakanni S, Shahi S, Venter H, Balakrishnan L et al. Drug-lipid A interactions on the Escherichia coli ABC transporter MsbA. J Bacteriol 2005, 187 : 6363 6369.
27. Barros LF. Measurement of sugar transport in single living cells. Eur J Physiol 1999, 437 : 763 770.
28. Beauclerk AA, Smith AJ. Transport of D-glucose and 3-O-methylglucose in the Cyanobacteria aphanocapsa 6714 and Nostoc strain Mac. Eur J Biochem 1978, 82 : 187 197.
29. Buchs AE, Sasson S, Joost HG, Cerasi E. Characterization of GLUT5 domains responsible for fructose transport. Endocrinology 1998, 139 : 827 831.
30. Raksajit W, Mäenpää P, Incharoensakdi A. Putrescine transport in a cyanobacterium Synechocystis sp. PCC 6803. J Biochem Mol Biol 2006, 39 : 394 399.
31. Uemura T, Kashiwagi K, Igarashi K. Polyamine uptake by DUR3 and SAM3 in Saccharomyces cerevisiae. J Biol Chem 2007, 282 : 7733 7741.
32. Yamada S, Awano N, Inubushi K, Maeda E, Nakamori S, Nishino K, Yamaguchi A et al. Effect of drug transporter genes on cysteine export and overproduction in Escherichia coli. Appl Environ Microbiol 2006, 72 : 4735 4742.
33. Parche S, Beleut M, Rezzonico E, Jacobs D, Arigoni F, Titgemeyer F, Jankovic I et al. Lactose-over-glucose preference in Bifidobacterium longum NCC2705: glcP, encoding a glucose transporter, is subject to lactose repression. J Bacteriol 2006, 188 : 1260 1265.
34. Elkins CA, Mullis LB. Substrate competition studies using whole-cell accumulation assays with the major tripartite multidrug efflux pumps of Escherichia coli. Antimicrob Agents Chemother 2007, 51 : 923 929.
35. Maulen NP, Henriquez EA, Kempe S, Cárcamo JG, Schmid-Kotsas A, Bachem M, Grünert A et al. Up-regulation and polarized expression of the sodium-ascorbic acid transporter SVCT1 in post-confluent differentiated CaCo-2 cells. J Biol Chem 2003, 278 : 9035 9041.
36. Li S, Whorton AR. Identification of stereoselective transporters for S-nitroso-L-cysteine. J Biol Chem 2005, 280 : 20102 20110.
37. Anzai N, Miyazaki H, Noshiro R, Khamdang S, Chairoungdua A, Shin HJ, Enomoto A et al. The multivalent PDZ domain-containing protein PDZK1 regulates transport activity of renal urate-anion exchanger URAT1 via its C terminus. J Biol Chem 2004, 279 : 45942 45950.
38. Perry JL, Dembla-Rajpal N, Hall LA, Pritchard JB. A three-dimensional model of human organic anion transporter. J Biol Chem 2006, 281 : 38071 38079.
39. Reinders A, Panshyshyn JA, Ward JM. Analysis of transport activity of Arabidopsis sugar alcohol permease homolog AtPLT5. J Biol Chem 2005, 280 : 1594 1602.
40. Liu K, Nagase H, Huang CG, Calamita G, Agre P. Purification and functional characterization of aquaporin-8. Biol Cell 2006, 98 : 153 161.
41. Ames GF, Nikaido K, Groarke J, Petithory J. Reconstitution of periplasmic transport in inside-out membrane vesicles. J Biol Chem 1989, 264 : 3998 4002.
42. Thanassi DG, Cheng LW, Nikaido H. Active efflux of bile salts by Escherichia coli. J Bacteriol 1997, 17 : 2512 2518.
43. Soksawatmaekhin W, Kuraishi A, Sakata K, Kashiwagi K, Igarashi K. Excretion and uptake of cadaverine by CadB and its physiological functions in Escherichia coli. Mol Microbiol 2004, 51 : 1401 1412.
44. Soksawatmaekhin W, Uemura T, Fukiwake N, Kashiwagi K, Igarashi K. Identification of the cadaverine recognition site on the cadaver-ine-lysine antiporter CadB. J Biol Chem 2006, 281 : 29213 29220.
45. Banerjee RK, Datta AG. Proteoliposome as the model for the study of membrane-bound enzymes and transport proteins. Mol Cell Biochem 1983, 50 : 3 15.
46. Juge N, Yoshida Y, Yatsushiro S, Omote H, Moriyama Y. Vesicular glutamate transporter contains two independent transport machineries. J Bacteriol 2006, 281 : 39499 39506.
47. Bowsher CG, Scrase-Field EF, Esposito S, Emes MJ, Tetlow IJ. Characterization of ADP-glucose transport across the cereal endosperm amyloplast envelope. J Exp Bot 2007, 58 : 1321 1332.
48. Eytan GD, Regev R, Assaraf YG. Functional reconstitution of P-glycoprotein reveals an apparent near stoichiometric drug transport to ATP hydrolysis. J Biol Chem 1996, 271 : 3172 3178.
49. Eytan GD, Borgnia MJ, Regev R, Assaraf YG. Transport of polypeptide ionophores into proteoliposomes reconstituted with rat liver P-glycoprotein. J Biol Chem 1994, 269 : 26058 26065.
50. + symport protein of Escherichia coli: effects of mutagenesis on transport, reaction with N-ethylmaleimide and antibiotic binding. Biochem J 2001, 353 : 709 717.
51. + transport protein, GaIP, of Escherichia coli. Biochem J 1995, 308 : 261 268.
52. Craik JD, Young JD, Cheeseman CI. GLUT-1 mediation of rapid glucose transport in dolphin (Tursiops truncatus) red blood cells. Am J Physiol 1998, 274 : 112 119.
53. Bevers LE, Hagedoorn PL, Krijger GC, Hagen WR. Tungsten transport protein A (WtpA) in Pyrococcus furiosus: the first member of a new class of tungstate and molybdate transporters. J Bacteriol 2006, 188 : 6498 6505.
54. Wei Y, Fu D. Selective metal binding to a membrane-embedded aspartate in the Escherichia coli metal transporter YiiP (FieF). J Biol Chem 2005, 280 : 33716 33724.
55. Patching SG, Brough AR, Herbert RB, Rajakarier JA, Henderson PJ, Middleton DA. Substrate affinities for membrane transport proteins determined by 13C cross-polarization magic-angle spinning nuclear magnetic resonance spectroscopy. J Am Chem Soc 2004, 126 : 3072 3080.
56. Quick M, Javitch JA. Monitoring the function of membrane transport proteins in detergent-solubilized form. Proc Natl Acad Sci USA 2007, 104 : 3603 3608.
57. Benabdelhak H, Kiontke S, Horn C, Ernst R, Blight MA, Holland IB, Schmitt L. A specific interaction between the NBD of the ABC-transporter HlyB and a C-terminal fragment of its transport substrate haemolysin A. J Mol Biol 2003, 327 : 1169 1179.
58. Priest BT, Swensen AM, McManus OB. Automated electrophysiol-ogy in drug discovery. Curr Pharm Des 2007, 13 : 2325 2337.
59. Glaaser IW, Bankston JR, Liu H, Tateyama M, Kass RS. A carboxyl-terminal hydrophobic interface is critical to sodium channel function. J Biol Chem 2006, 281 : 24015 24023.
60. Romanenko V, Nakamoto T, Srivastava A, Melvin JE, Begenisich T. Molecular identification and physiological roles of parotid aci-nar cell maxi-K channels. J Biol Chem 2006, 281 : 27964 27972.
61. + channel in macrophages. J Biol Chem 2006, 281 : 37675 37685.
62. Heuberger EH, Poolman B. A spectroscopic assay for the analysis of carbohydrate transport reactions. Eur J Biochem 2000, 267 : 228 234.
63. Heuberger EH, Smits E, Poolman B. Xyloside transport by XylP, a member of the galactoside-pentoside-hexuronide family. J Biol Chem 2001, 276 : 34465 34472.
64. Chao Y, Fu D. Thermodynamic studies of the mechanism of metal binding to the Escherichia coli zinc transporter YiiP. J Biol Chem 2004, 279 : 17173 17180.
65. Kozono D, Ding X, Kwasaki I, Meng X, Kamagata Y, Agre P, Kitagawa Y. Functional expression and characterization of an archaeal aquaporin. J Biol Chem 2003, 278 : 10649 10656.
66. Calamita G, Ferri D, Gena P, Liquori GE, Cavalier A, Thomas D, Svelto M. The inner mitochondrial membrane has aquaporin-8 water channels and is highly permeable to water. J Biol Chem 2005, 280 : 17149 17153.
67. Mallo RC, Ashby MT. AqpZ-mediated water permeability in Escherichia coli measured by stopped-flow spectroscopy. J Bacteriol 2006, 188 : 820 822.