-
1
-
-
0035905782
-
Modelling cellular behavior
-
10.1038/35053181 11201753
-
Endy D Brent R Modelling cellular behavior Nature 2001, 409:391-395. 10.1038/35053181 11201753
-
(2001)
Nature
, vol.409
, pp. 391-395
-
-
Endy, D.1
Brent, R.2
-
4
-
-
0032531818
-
Calcium - A life and death signal
-
10.1038/27094 9790183
-
Berridge M Bootman M Lipp P Calcium - a life and death signal Nature 1998, 395:645-648. 10.1038/27094 9790183
-
(1998)
Nature
, vol.395
, pp. 645-648
-
-
Berridge, M.1
Bootman, M.2
Lipp, P.3
-
5
-
-
0037022309
-
Calcium signaling: A tale for all seasons
-
122154 11830654 10.1073/pnas.032427999
-
Carafoli E Calcium signaling: A tale for all seasons PNAS 2002, 99(3);1115-1122. 122154 11830654 10.1073/pnas.032427999
-
(2002)
PNAS
, vol.99
, Issue.3
, pp. 1115-1122
-
-
Carafoli, E.1
-
6
-
-
0022575044
-
Repetitive transient rises in cytoplasmic free calcium in hormone-stimulated hepatocytes
-
10.1038/319600a0 3945348
-
Woods N Cuthbertson K Cobbold P Repetitive transient rises in cytoplasmic free calcium in hormone-stimulated hepatocytes Nature 1986, 319:600-602. 10.1038/319600a0 3945348
-
(1986)
Nature
, vol.319
, pp. 600-602
-
-
Woods, N.1
Cuthbertson, K.2
Cobbold, P.3
-
7
-
-
0032580202
-
Calcium oscillations increase the efficiency and specificity of gene expression
-
10.1038/31960 9582075
-
Dolmetsch R Xu K Lewis R Calcium oscillations increase the efficiency and specificity of gene expression Nature 1998, 392:933-936. 10.1038/ 31960 9582075
-
(1998)
Nature
, vol.392
, pp. 933-936
-
-
Dolmetsch, R.1
Xu, K.2
Lewis, R.3
-
8
-
-
3042695847
-
2+ waves
-
10.1088/1367-2630/5/1/396
-
2+ waves New Journal of Physics 2003, 5:96.1-96.28. 10.1088/1367-2630/5/1/396
-
(2003)
New Journal of Physics
, vol.5
-
-
Falcke, M.1
-
10
-
-
0025772154
-
Hormone-induced Calcium Oscillations in Liver Cells Can Be Explained by a Simple One Pool Model
-
1904060
-
Somogyi R Stucki J Hormone-induced Calcium Oscillations in Liver Cells Can Be Explained by a Simple One Pool Model J Biol Chem 1991, 266(17):11068-11077. 1904060
-
(1991)
J Biol Chem
, vol.266
, Issue.17
, pp. 11068-11077
-
-
Somogyi, R.1
Stucki, J.2
-
11
-
-
1042290530
-
On the encoding and decoding of calcium signals in hepatocytes
-
10.1016/j.bpc.2003.08.010 14871603
-
Larsen A Olsen L Kummer U On the encoding and decoding of calcium signals in hepatocytes Biophys Chem 2004, 107:83-99. 10.1016/ j.bpc.2003.08.010 14871603
-
(2004)
Biophys Chem
, vol.107
, pp. 83-99
-
-
Larsen, A.1
Olsen, L.2
Kummer, U.3
-
12
-
-
0036125304
-
Modelling of simple and complex calcium oscillations - From single-cell responses to intercellular signalling
-
10.1046/j.0014-2956.2001.02720.x 11874447
-
Schuster S Marhl M Höfer T Modelling of simple and complex calcium oscillations - From single-cell responses to intercellular signalling Eur J Biochem 2002, 269:1333-1355. 10.1046/j.0014-2956.2001.02720.x 11874447
-
(2002)
Eur J Biochem
, vol.269
, pp. 1333-1355
-
-
Schuster, S.1
Marhl, M.2
Höfer, T.3
-
14
-
-
28844446613
-
Information Processing in Calcium Signal Transduction
-
Berlin: Springer Verlag Falcke M, Malchow D
-
Larsen A Kummer U Information Processing in Calcium Signal Transduction Understanding Calcium Dynamics Berlin: Springer Verlag Falcke M, Malchow D 2003, 623:153-178.
-
(2003)
Understanding Calcium Dynamics
, vol.623
, pp. 153-178
-
-
Larsen, A.1
Kummer, U.2
-
15
-
-
0032498172
-
2+ Oscillations
-
10.1126/science.279.5348.227 9422695
-
2+ Oscillations Science 1998, 279:227-230. 10.1126/ science.279.5348.227 9422695
-
(1998)
Science
, vol.279
, pp. 227-230
-
-
De Koninck, P.1
Schulman, H.2
-
17
-
-
0032582525
-
Protein Kinase C as a Molecular Machine for Decoding Calcium and Diacylglycerol Signals
-
10.1016/S0092-8674(00)81763-8 9814702
-
Oancea E Meyer T Protein Kinase C as a Molecular Machine for Decoding Calcium and Diacylglycerol Signals Cell 1998, 95(3):307-318. 10.1016/ S0092-8674(00)81763-8 9814702
-
(1998)
Cell
, vol.95
, Issue.3
, pp. 307-318
-
-
Oancea, E.1
Meyer, T.2
-
18
-
-
0344739838
-
2+ oscillations: A simple model
-
10.1016/S0143-4160(03)00152-0 14572807
-
2+ oscillations: A simple model Cell Calcium 2003, 34:485-497. 10.1016/S0143-4160(03)00152-0 14572807
-
(2003)
Cell Calcium
, vol.34
, pp. 485-497
-
-
Dupont, G.1
Houart, G.2
Koninck, P.D.3
-
19
-
-
0034700415
-
2+ Oscillations: A Theoretical Study
-
10.1006/jtbi.2000.2139 11093832
-
2+ Oscillations: A Theoretical Study J Theor Biol 2000, 207:445-454. 10.1006/jtbi.2000.2139 11093832
-
(2000)
J Theor Biol
, vol.207
, pp. 445-454
-
-
Gall, D.1
Baus, E.2
Dupont, G.3
-
20
-
-
19544380768
-
Decoding of calcium oscillations by phosphorylation cycles
-
Mamitsuka H, Smith T, Holzhütter H, Kanehisa M, DeLisi C, Heinrich R, Miyano S, Kyoto
-
Salazar C Politi A Höfer T Decoding of calcium oscillations by phosphorylation cycles Proceedings of Fourth International Workshop on Bioinformatics and Systems Biology Mamitsuka H, Smith T, Holzhütter H, Kanehisa M, DeLisi C, Heinrich R, Miyano S, Kyoto 2004, 50-51.
-
(2004)
Proceedings of Fourth International Workshop on Bioinformatics and Systems Biology
, pp. 50-51
-
-
Salazar, C.1
Politi, A.2
Höfer, T.3
-
21
-
-
26844491373
-
Selective regulation of cellular processes via protein cascades acting as band-pass filters for time-limited oscillations
-
16213486
-
Marhl M Perc M Schuster S Selective regulation of cellular processes via protein cascades acting as band-pass filters for time-limited oscillations FEBS Letters 2005, 579:5461-5465. 16213486
-
(2005)
FEBS Letters
, vol.579
, pp. 5461-5465
-
-
Marhl, M.1
Perc, M.2
Schuster, S.3
-
22
-
-
33645391539
-
2+ oscillations
-
10.1016/j.bpc.2005.11.005 16338050
-
2+ oscillations Biophys Chem 2006, 120:161-167. 10.1016/ j.bpc.2005.11.005 16338050
-
(2006)
Biophys Chem
, vol.120
, pp. 161-167
-
-
Marhl, M.1
Perc, M.2
Schuster, S.3
-
23
-
-
19544386343
-
Differential regulation of proteins by bursting calcium oscillations - A theoretical study
-
10.1016/j.biosystems.2005.02.004 15917128
-
Schuster S Knoke B Marhl M Differential regulation of proteins by bursting calcium oscillations - a theoretical study BioSystems 2005, 81:49-63. 10.1016/j.biosystems.2005.02.004 15917128
-
(2005)
BioSystems
, vol.81
, pp. 49-63
-
-
Schuster, S.1
Knoke, B.2
Marhl, M.3
-
24
-
-
0141750574
-
2+ oscillations on activation of glycogen phosphorylase
-
10.1016/S0301-4622(03)00192-3 14556891
-
2+ oscillations on activation of glycogen phosphorylase Biophys Chem 2003, 106:193-202. 10.1016/S0301-4622(03)00192-3 14556891
-
(2003)
Biophys Chem
, vol.106
, pp. 193-202
-
-
Rozi, A.1
Jia, Y.2
-
26
-
-
23844558150
-
Volatile anesthetics disrupt frontal-posterior recurrent information transfer at gamma frequencies in rat
-
10.1016/j.neulet.2005.06.018 16019145
-
Imas O Ropella K Ward B Wood J Hudetz A Volatile anesthetics disrupt frontal-posterior recurrent information transfer at gamma frequencies in rat Neuroscience Lett 2005, 387(3):145-50. 10.1016/j.neulet.2005.06.018 16019145
-
(2005)
Neuroscience Lett
, vol.387
, Issue.3
, pp. 145-150
-
-
Imas, O.1
Ropella, K.2
Ward, B.3
Wood, J.4
Hudetz, A.5
-
27
-
-
0033334496
-
Information theory and neural coding
-
10.1038/14731 10526332
-
Borst A Theunissen F Information theory and neural coding Nature Neuroscience 1999, 2(11):947-957. 10.1038/14731 10526332
-
(1999)
Nature Neuroscience
, vol.2
, Issue.11
, pp. 947-957
-
-
Borst, A.1
Theunissen, F.2
-
29
-
-
31144458266
-
Differential coding of humoral stimuli by timing and amplitude of intracellular calcium spike trains
-
10.1049/ip-syb:20050040 16986269
-
Kropp M Gabbiani F Prank K Differential coding of humoral stimuli by timing and amplitude of intracellular calcium spike trains IEE Proc-Syst Biol 2005, 152(4):263-268. 10.1049/ip-syb:20050040 16986269
-
(2005)
IEE Proc-Syst Biol
, vol.152
, Issue.4
, pp. 263-268
-
-
Kropp, M.1
Gabbiani, F.2
Prank, K.3
-
31
-
-
12944275674
-
Measuring information transfer
-
10.1103/PhysRevLett.85.461 10991308
-
Schreiber T Measuring information transfer Phys Rev Lett 2000, 85(2):461-4. 10.1103/PhysRevLett.85.461 10991308
-
(2000)
Phys Rev Lett
, vol.85
, Issue.2
, pp. 461-464
-
-
Schreiber, T.1
-
32
-
-
33745199829
-
Quantitative evaluation of interrelations between spontaneous low-frequency oscillations in cerebral hemodynamics and systemic cardiovascular dynamics
-
10.1016/j.neuroimage.2006.02.010 16549367
-
Katura T Tanaka N Obata A Sato H Maki A Quantitative evaluation of interrelations between spontaneous low-frequency oscillations in cerebral hemodynamics and systemic cardi1ovascular dynamics Neuroimage 2006, 31(4):1592-600. 10.1016/j.neuroimage.2006.02.010 16549367
-
(2006)
Neuroimage
, vol.31
, Issue.4
, pp. 1592-1600
-
-
Katura, T.1
Tanaka, N.2
Obata, A.3
Sato, H.4
Maki, A.5
-
33
-
-
26244436701
-
Analysing the information flow between financial time series - An improved estimator for transfer entropy
-
10.1140/epjb/e2002-00379-2
-
Marschinski R Kantz H Analysing the information flow between financial time series - An improved estimator for transfer entropy Europ Phys J B 2002, 30(2):275-281. 10.1140/epjb/e2002-00379-2
-
(2002)
Europ Phys J B
, vol.30
, Issue.2
, pp. 275-281
-
-
Marschinski, R.1
Kantz, H.2
-
34
-
-
36749019786
-
Determining the verse of magnetic turbulent cascades in the Earth's magnetospheric cusp via transfer entropy analysis: Preliminary results
-
Materassi M Wernik A Yordanova E Determining the verse of magnetic turbulent cascades in the Earth's magnetospheric cusp via transfer entropy analysis: Preliminary results Nonlin Processes Geophys 2007, 14:153-161.
-
(2007)
Nonlin Processes Geophys
, vol.14
, pp. 153-161
-
-
Materassi, M.1
Wernik, A.2
Yordanova, E.3
-
35
-
-
33645023062
-
Detecting impact damage in experimental composite structures: An information-theoretic approach
-
10.1088/0964-1726/15/2/023
-
Nichols J Seaver M Trickey S Salvino L Pecora D Detecting impact damage in experimental composite structures: An information-theoretic approach Smart Mater Struct 2006, 15(2):424-434. 10.1088/0964-1726/15/2/023
-
(2006)
Smart Mater Struct
, vol.15
, Issue.2
, pp. 424-434
-
-
Nichols, J.1
Seaver, M.2
Trickey, S.3
Salvino, L.4
Pecora, D.5
-
36
-
-
33750461243
-
Mapping Information Flow in Sensorimotor Networks
-
10.1371/journal.pcbi.0020144 17069456 1626158
-
Lungarella M Sporns O Mapping Information Flow in Sensorimotor Networks PLOS Comp Biol 2006, 2(10):e144. 10.1371/journal.pcbi.0020144 17069456 1626158
-
(2006)
PLOS Comp Biol
, vol.2
, Issue.10
-
-
Lungarella, M.1
Sporns, O.2
-
38
-
-
0017030517
-
A General Method for Numerically Simulating the Stochastic Time Evolution of Coupled Chemical Reactions
-
10.1016/0021-9991(76)90041-3
-
Gillespie D A General Method for Numerically Simulating the Stochastic Time Evolution of Coupled Chemical Reactions J Comp Phys 1976, 22:403-434. 10.1016/0021-9991(76)90041-3
-
(1976)
J Comp Phys
, vol.22
, pp. 403-434
-
-
Gillespie, D.1
-
39
-
-
0345792394
-
Surrogate time series
-
10.1016/S0167-2789(00)00043-9
-
Schreiber T Schmitz A Surrogate time series Physica D 2000, 142(3-4):346-382. 10.1016/S0167-2789(00)00043-9
-
(2000)
Physica D
, vol.142
, Issue.3-4
, pp. 346-382
-
-
Schreiber, T.1
Schmitz, A.2
-
40
-
-
24144463446
-
Transition from Stochastic to Deterministic Behavior in Calcium Oscillations
-
1366664 15994893 10.1529/biophysj.104.057216
-
Kummer U Krajnc B Pahle J Green A Dixon C Marhl M Transition from Stochastic to Deterministic Behavior in Calcium Oscillations Biophys J 2005, 89(3):1603-1611. 1366664 15994893 10.1529/biophysj.104.057216
-
(2005)
Biophys J
, vol.89
, Issue.3
, pp. 1603-1611
-
-
Kummer, U.1
Krajnc, B.2
Pahle, J.3
Green, A.4
Dixon, C.5
Marhl, M.6
-
41
-
-
0037078982
-
Control, exploitation and tolerance of intracellular noise
-
10.1038/nature01258 12432408
-
Rao C Wolf D Arkin A Control, exploitation and tolerance of intracellular noise Nature 2002, 420:231-237. 10.1038/nature01258 12432408
-
(2002)
Nature
, vol.420
, pp. 231-237
-
-
Rao, C.1
Wolf, D.2
Arkin, A.3
-
42
-
-
34248364404
-
Scaling of number, size, and metabolic rate of cells with body size in mammals
-
1838666 17360590 10.1073/pnas.0611235104
-
Savage V Allen A Brown J Gillooly J Herman A Woodruff W West G Scaling of number, size, and metabolic rate of cells with body size in mammals PNAS 2007, 104(11):4718-4723. 1838666 17360590 10.1073/pnas.0611235104
-
(2007)
PNAS
, vol.104
, Issue.11
, pp. 4718-4723
-
-
Savage, V.1
Allen, A.2
Brown, J.3
Gillooly, J.4
Herman, A.5
Woodruff, W.6
West, G.7
-
43
-
-
0042526388
-
The mutual information: Detecting and evaluating dependencies between variables
-
12386007
-
Steuer R Kurths J Daub C Weise J Selbig J The mutual information: Detecting and evaluating dependencies between variables Bioinformatics 2002, 18(Suppl 2):S231-S240. 12386007
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 2
-
-
Steuer, R.1
Kurths, J.2
Daub, C.3
Weise, J.4
Selbig, J.5
-
45
-
-
0036610922
-
Information transfer in continuous processes
-
10.1016/S0167-2789(02)00432-3
-
Kaiser A Schreiber T Information transfer in continuous processes Physica D 2002, 166(1-2):43-62. 10.1016/S0167-2789(02)00432-3
-
(2002)
Physica D
, vol.166
, Issue.1-2
, pp. 43-62
-
-
Kaiser, A.1
Schreiber, T.2
-
46
-
-
33645429016
-
Exact Stochastic Simulation of Coupled Chemical Reactions
-
10.1021/j100540a008
-
Gillespie D Exact Stochastic Simulation of Coupled Chemical Reactions J Phys Chem 1977. 81(25):2340-2361. 10.1021/j100540a008
-
(1977)
J Phys Chem
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D.1
-
47
-
-
0001144902
-
Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels
-
10.1021/jp993732q
-
Gibson M Bruck J Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels J Phys Chem A 2000, 104(9):1876-1889. 10.1021/jp993732q
-
(2000)
J Phys Chem A
, vol.104
, Issue.9
, pp. 1876-1889
-
-
Gibson, M.1
Bruck, J.2
-
48
-
-
4644266081
-
Efficient formulation of the stochastic simulation algorithm for chemically reacting systems
-
10.1063/1.1778376 15332951
-
Cao Y Li H Petzold L Efficient formulation of the stochastic simulation algorithm for chemically reacting systems J Chem Phys 2004, 121(9):4059-4067. 10.1063/1.1778376 15332951
-
(2004)
J Chem Phys
, vol.121
, Issue.9
, pp. 4059-4067
-
-
Cao, Y.1
Li, H.2
Petzold, L.3
-
49
-
-
84886761772
-
-
Copasi http://www.copasi.org
-
Copasi
-
-
-
50
-
-
84886759099
-
-
Dizzy http://magnet.systemsbiology.net/software/Dizzy
-
Dizzy
-
-
-
52
-
-
22944451159
-
Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions
-
10.1063/1.1835951
-
Salis H Kaznessis Y Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions J Chem Phys 2005, 122(5):054103. 10.1063/1.1835951
-
(2005)
J Chem Phys
, vol.122
, Issue.5
, pp. 054103
-
-
Salis, H.1
Kaznessis, Y.2
-
54
-
-
84886754076
-
-
Octave http://www.octave.org
-
Octave
-
-
-
56
-
-
0029121050
-
2+ in single rat hepatocytes mimicked by 2-methylthioATP
-
1908934 8640335
-
2+ in single rat hepatocytes mimicked by 2-methylthioATP Br J Pharmacol 1995, 116:1979-1984. 1908934 8640335
-
(1995)
Br J Pharmacol
, vol.116
, pp. 1979-1984
-
-
Dixon, C.1
Cobbold, P.2
Green, A.3
-
57
-
-
0001906505
-
Aequorin measurements of cytoplasmic free calcium
-
Oxford: I.R.L. Press McCormack J, Cobbold P
-
Cobbold P Lee J Aequorin measurements of cytoplasmic free calcium Cellular Calcium: A Practical Approach Oxford: I.R.L. Press McCormack J, Cobbold P 1991, 55-81.
-
(1991)
Cellular Calcium: A Practical Approach
, pp. 55-81
-
-
Cobbold, P.1
Lee, J.2
|