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Volumn 1, Issue 4, 2003, Pages 125-133

Computational approaches for deciphering the transcriptional regulatory network by promoter analysis

Author keywords

[No Author keywords available]

Indexed keywords

BINDING AFFINITY; BINDING SITE; BIOINFORMATICS; CIS ISOMER; COMPARATIVE GENE MAPPING; COMPUTER MODEL; GENE CLUSTER; GENE CONTROL; GENE EXPRESSION SYSTEM; GENE IDENTIFICATION; GENE LOCATION; GENE MAPPING; GENE TARGETING; GENETIC CODE; GENETIC TRANSCRIPTION; HUMAN; IMMUNOPRECIPITATION; INFORMATION PROCESSING; NONHUMAN; PREDICTION; PROMOTER REGION; REVIEW; SPECIES COMPARISON; STATISTICAL SIGNIFICANCE; STRUCTURE ANALYSIS; TECHNIQUE; TECHNOLOGY;

EID: 4243079128     PISSN: 17418364     EISSN: None     Source Type: Journal    
DOI: 10.1016/s1478-5382(03)02341-2     Document Type: Review
Times cited : (7)

References (67)
  • 1
    • 0038702346 scopus 로고    scopus 로고
    • Genome informatics: Current status and future prospects
    • Winslow, R.L. and Boguski, M.S. (2003) Genome informatics: current status and future prospects. Circ. Res. 92, 953-961
    • (2003) Circ. Res. , vol.92 , pp. 953-961
    • Winslow, R.L.1    Boguski, M.S.2
  • 2
    • 0034704248 scopus 로고    scopus 로고
    • Genome-wide location and function of DNA binding proteins
    • Ren, B. et al.(2000) Genome-wide location and function of DNA binding proteins. Science 290, 2306-2309
    • (2000) Science , vol.290 , pp. 2306-2309
    • Ren, B.1
  • 3
    • 0004155865 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press
    • Mount, D.W. (2001) In Bioinformatics, Cold Spring Harbor Laboratory Press, pp. 337-380
    • (2001) Bioinformatics , pp. 337-380
    • Mount, D.W.1
  • 4
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome
    • Venter, J.C. et al.(2001) The sequence of the human genome. Science 291, 1304-1351
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1
  • 5
    • 0033025047 scopus 로고    scopus 로고
    • Promoter2.0: For the recognition of PolII promoter sequences
    • Knudsen, S. (1999) Promoter2.0: for the recognition of PolII promoter sequences. Bioinformatics 15, 356-361
    • (1999) Bioinformatics , vol.15 , pp. 356-361
    • Knudsen, S.1
  • 6
    • 0029038960 scopus 로고
    • Predicting Pol II promoter sequences using transcription factor binding sites
    • Prestridge, D.S. (1995) Predicting Pol II promoter sequences using transcription factor binding sites. J. Mol. Biol. 249, 923-932
    • (1995) J. Mol. Biol. , vol.249 , pp. 923-932
    • Prestridge, D.S.1
  • 7
    • 0030627562 scopus 로고    scopus 로고
    • The Gene-Finder computer tools for analysis of human and model organisms genome sequences
    • Solovyev, V. and Salamov, A. (1997) The Gene-Finder computer tools for analysis of human and model organisms genome sequences. Proc. Int. Conf. Intell. Syst. Mol. Biol. 5, 294-302
    • (1997) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.5 , pp. 294-302
    • Solovyev, V.1    Salamov, A.2
  • 8
    • 0031967332 scopus 로고    scopus 로고
    • Identification of human gene core promoters in silico
    • Zhang, M.Q. (1998) Identification of human gene core promoters in silico. Genome Res. 8, 319-326
    • (1998) Genome Res. , vol.8 , pp. 319-326
    • Zhang, M.Q.1
  • 9
    • 0034737325 scopus 로고    scopus 로고
    • Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: A novel context analysis approach
    • Scherf, M. et al.(2000) Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach. J. Mol. Biol. 297, 599-606
    • (2000) J. Mol. Biol. , vol.297 , pp. 599-606
    • Scherf, M.1
  • 10
  • 11
    • 0036123111 scopus 로고    scopus 로고
    • Computational detection and location of transcription start sites in mammalian genomic DNA
    • Down, T.A. and Hubbard, T.J. (2002) Computational detection and location of transcription start sites in mammalian genomic DNA. Genome Res. 12, 458-461
    • (2002) Genome Res. , vol.12 , pp. 458-461
    • Down, T.A.1    Hubbard, T.J.2
  • 12
    • 0037352074 scopus 로고    scopus 로고
    • Computer model for recognition of functional transcription start sites in RNA polymerase II promoters of vertebrates
    • Bajic, V. et al.(2003) Computer model for recognition of functional transcription start sites in RNA polymerase II promoters of vertebrates. J. Mol. Graph. Model. 21, 323-332
    • (2003) J. Mol. Graph. Model. , vol.21 , pp. 323-332
    • Bajic, V.1
  • 13
    • 0033822364 scopus 로고    scopus 로고
    • Large-scale human promoter mapping using CpG islands
    • Ioshikhes, I.P. and Zhang, M.Q. (2000) Large-scale human promoter mapping using CpG islands. Nat. Genet. 26, 61-63
    • (2000) Nat. Genet. , vol.26 , pp. 61-63
    • Ioshikhes, I.P.1    Zhang, M.Q.2
  • 14
    • 0035735265 scopus 로고    scopus 로고
    • Computational identification of promoters and first exons in the human genome
    • Davuluri, R.V. et al.(2001) Computational identification of promoters and first exons in the human genome. Nat. Genet. 29, 412-417
    • (2001) Nat. Genet. , vol.29 , pp. 412-417
    • Davuluri, R.V.1
  • 15
    • 0035236049 scopus 로고    scopus 로고
    • Promoter prediction in the human genome
    • Hannenhalli, S. and Levy, S. (2001) Promoter prediction in the human genome. Bioinformatics 17(Suppl 1), S90-S96
    • (2001) Bioinformatics , vol.17 , Issue.1 SUPPL.
    • Hannenhalli, S.1    Levy, S.2
  • 16
    • 0035941214 scopus 로고    scopus 로고
    • Analyses of p53 target genes in the human genome by informatic and microarray approaches
    • Wang, L. et al.(2001) Analyses of p53 target genes in the human genome by informatic and microarray approaches. J. Biol. Chem. 276, 43604-43610
    • (2001) J. Biol. Chem. , vol.276 , pp. 43604-43610
    • Wang, L.1
  • 17
    • 0036261715 scopus 로고    scopus 로고
    • Computational analysis of composite regulatory elements
    • Qiu, P. et al.(2002) Computational analysis of composite regulatory elements. Mamm. Genome 13, 327-332
    • (2002) Mamm. Genome , vol.13 , pp. 327-332
    • Qiu, P.1
  • 18
    • 0038664127 scopus 로고    scopus 로고
    • Identification and functional analysis of human transcriptional promoters
    • Trinklein, N.D. et al.(2003) Identification and functional analysis of human transcriptional promoters. Genome Res. 13, 308-312
    • (2003) Genome Res. , vol.13 , pp. 308-312
    • Trinklein, N.D.1
  • 19
    • 0036124446 scopus 로고    scopus 로고
    • Consensus promoter identification in the human genome utilizing expressed gene markers and gene modeling
    • Liu, R. and States, D.J. (2002) Consensus promoter identification in the human genome utilizing expressed gene markers and gene modeling. Genome Res. 12, 462-469
    • (2002) Genome Res. , vol.12 , pp. 462-469
    • Liu, R.1    States, D.J.2
  • 20
    • 0028857929 scopus 로고
    • Novel NFAT sites that mediate activation of the interleukin-2 promoter in response to T-cell receptor stimulation
    • Rooney, J.W. et al.(1995) Novel NFAT sites that mediate activation of the interleukin-2 promoter in response to T-cell receptor stimulation. Mol. Cell. Biol. 15, 6299-6310
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 6299-6310
    • Rooney, J.W.1
  • 21
    • 0035172256 scopus 로고    scopus 로고
    • The TRANSFAC system on gene expression regulation
    • Wingender, E. et al.(2001) The TRANSFAC system on gene expression regulation. Nucleic Acids Res. 29, 281-283
    • (2001) Nucleic Acids Res. , vol.29 , pp. 281-283
    • Wingender, E.1
  • 22
    • 0031106463 scopus 로고    scopus 로고
    • Finding protein-binding sites in DNA sequences: The next generation
    • Frech, K. et al.(1997) Finding protein-binding sites in DNA sequences: the next generation. Trends Biochem. Sci. 22, 103-104
    • (1997) Trends Biochem. Sci. , vol.22 , pp. 103-104
    • Frech, K.1
  • 23
    • 0032483307 scopus 로고    scopus 로고
    • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    • van Helden, J. et al.(1998) Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol. 281, 827-842
    • (1998) J. Mol. Biol. , vol.281 , pp. 827-842
    • Helden, J.1
  • 24
    • 0031787969 scopus 로고    scopus 로고
    • Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
    • Roth, F.P. et al.(1998) Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat. Biotechnol. 16, 939-945
    • (1998) Nat. Biotechnol. , vol.16 , pp. 939-945
    • Roth, F.P.1
  • 25
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz, G.Z. and Stormo, G.D. (1999) Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 15, 563-577
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 26
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey, T.L. and Elkan, C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2, 28-36
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 27
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
    • Lawrence, C.E. et al.(1993) Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science 262, 208-214
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.E.1
  • 28
    • 0033655171 scopus 로고    scopus 로고
    • ANN-Spec: A method for discovering transcription factor binding sites with improved specificity
    • Workman, C.T. and Stormo, G.D. (2000) ANN-Spec: A method for discovering transcription factor binding sites with improved specificity. Pac. Symp. Biocomput. 1, 467-478
    • (2000) Pac. Symp. Biocomput. , vol.1 , pp. 467-478
    • Workman, C.T.1    Stormo, G.D.2
  • 29
    • 0034628901 scopus 로고    scopus 로고
    • Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
    • Hughes, J. et al.(2000) Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol. 296, 1205-1214
    • (2000) J. Mol. Biol. , vol.296 , pp. 1205-1214
    • Hughes, J.1
  • 30
    • 0036110853 scopus 로고    scopus 로고
    • Finding motifs using random projections
    • Buhler, J. and Tompa, M. (2002) Finding motifs using random projections. J. Comput. Biol. 9, 225-242
    • (2002) J. Comput. Biol. , vol.9 , pp. 225-242
    • Buhler, J.1    Tompa, M.2
  • 31
    • 0036324753 scopus 로고    scopus 로고
    • An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
    • Liu, X.S. et al.(2002) An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. Nat. Biotechnol. 20, 835-839
    • (2002) Nat. Biotechnol. , vol.20 , pp. 835-839
    • Liu, X.S.1
  • 32
    • 0035135420 scopus 로고    scopus 로고
    • Regulatory element detection using correlation with expression
    • Bussemaker, H.J. et al.(2001) Regulatory element detection using correlation with expression. Nat. Genet. 27, 167-171
    • (2001) Nat. Genet. , vol.27 , pp. 167-171
    • Bussemaker, H.J.1
  • 33
    • 0034730161 scopus 로고    scopus 로고
    • Building a dictionary for genomes: Identification of presumptive regulatory sites by statistical analysis
    • Bussemaker, H.J. et al.(2000) Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis. Proc. Natl. Acad. Sci. U. S. A. 97, 10096-10100
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 10096-10100
    • Bussemaker, H.J.1
  • 34
    • 0034821699 scopus 로고    scopus 로고
    • cis element/transcription factor analysis (cis/TF): A method for discovering transcription factor/cis element relationships
    • Birnbaum, K. et al.(2001) cis element/transcription factor analysis (cis/TF): a method for discovering transcription factor/cis element relationships. Genome Res. 11, 1567-1573
    • (2001) Genome Res. , vol.11 , pp. 1567-1573
    • Birnbaum, K.1
  • 35
    • 0036300823 scopus 로고    scopus 로고
    • Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm
    • Zhu, Z. et al.(2002) Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm. J. Mol. Biol. 318, 71-81
    • (2002) J. Mol. Biol. , vol.318 , pp. 71-81
    • Zhu, Z.1
  • 36
    • 0035221367 scopus 로고    scopus 로고
    • A structure-based approach for prediction of protein binding sites in gene upstream regions
    • Mandel-Gutfreund, Y. et al.(2001) A structure-based approach for prediction of protein binding sites in gene upstream regions. Pac. Symp. Biocomput. 1, 139-150
    • (2001) Pac. Symp. Biocomput. , vol.1 , pp. 139-150
    • Mandel-Gutfreund, Y.1
  • 37
    • 0037965981 scopus 로고    scopus 로고
    • On schemes of combinatorial transcription logic
    • Buchler, N.E. et al.(2003) On schemes of combinatorial transcription logic. Proc. Natl. Acad. Sci. U. S. A. 100, 5136-5141
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , pp. 5136-5141
    • Buchler, N.E.1
  • 38
    • 0028930789 scopus 로고
    • Human granulocyte-macrophage colony-stimulating factor enhancer function is associated with cooperative interactions between AP-1 and NFATp/c
    • Cockerill, P.N. et al.(1995) Human granulocyte-macrophage colony-stimulating factor enhancer function is associated with cooperative interactions between AP-1 and NFATp/c. Mol. Cell. Biol. 15, 2071-2079
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 2071-2079
    • Cockerill, P.N.1
  • 39
    • 0035998754 scopus 로고    scopus 로고
    • TRANSCompel: A database on composite regulatory elements in eukaryotic genes
    • Kel, O.V. et al.(2002) TRANSCompel: a database on composite regulatory elements in eukaryotic genes. Nucleic Acids Res. 30, 332-334
    • (2002) Nucleic Acids Res. , vol.30 , pp. 332-334
    • Kel, O.V.1
  • 40
    • 0032948782 scopus 로고    scopus 로고
    • Functional promoter modules can be detected by formal models independent of overall nucleotide sequence similarity
    • Klingenhoff, A. et al.(1999) Functional promoter modules can be detected by formal models independent of overall nucleotide sequence similarity. Bioinformatics 15, 180-186
    • (1999) Bioinformatics , vol.15 , pp. 180-186
    • Klingenhoff, A.1
  • 41
    • 0036796540 scopus 로고    scopus 로고
    • Predicting transcription factor synergism
    • Hannenhalli, S. and Levy, S. (2002) Predicting transcription factor synergism. Nucleic Acids Res. 30, 4278-1284
    • (2002) Nucleic Acids Res. , vol.30 , pp. 4278-11284
    • Hannenhalli, S.1    Levy, S.2
  • 42
    • 0034894539 scopus 로고    scopus 로고
    • Identifying target sites for cooperatively binding factors
    • Guhathakurta, D. and Stormo, G.D. (2001) Identifying target sites for cooperatively binding factors. Bioinformatics 17, 608-621
    • (2001) Bioinformatics , vol.17 , pp. 608-621
    • Guhathakurta, D.1    Stormo, G.D.2
  • 43
    • 0034785443 scopus 로고    scopus 로고
    • Identifying regulatory networks by combinatorial analysis of promoter elements
    • Pilpel Y. et al.(2001) Identifying regulatory networks by combinatorial analysis of promoter elements. Nat. Genet. 29, 153-159
    • (2001) Nat. Genet. , vol.29 , pp. 153-159
    • Pilpel, Y.1
  • 44
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul, S.F. et al.(1990) Basic local alignment search tool. J. Mol. Biol. 215, 403-410
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 45
    • 0034020416 scopus 로고    scopus 로고
    • PipMaker-a web server for aligning two genomic DNA sequences
    • Schwartz, S. et al.(2000) PipMaker-a web server for aligning two genomic DNA sequences. Genome Res. 10, 577-586
    • (2000) Genome Res. , vol.10 , pp. 577-586
    • Schwartz, S.1
  • 46
    • 0031874740 scopus 로고    scopus 로고
    • Bayesian adaptive sequence alignment algorithms
    • Zhu, J. et al.(1998) Bayesian adaptive sequence alignment algorithms. Bioinformatics 14, 25-39
    • (1998) Bioinformatics , vol.14 , pp. 25-39
    • Zhu, J.1
  • 47
    • 0032884653 scopus 로고    scopus 로고
    • Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs
    • Jareborg, N. et al.(1999) Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs. Genome Res. 9, 815-824
    • (1999) Genome Res. , vol.9 , pp. 815-824
    • Jareborg, N.1
  • 48
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D. et al.(1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1
  • 49
    • 0034518158 scopus 로고    scopus 로고
    • VISTA: Visualizing global DNA sequence alignments of arbitrary length
    • Mayor, C. et al.(2000) VISTA: visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16, 1046-1047
    • (2000) Bioinformatics , vol.16 , pp. 1046-1047
    • Mayor, C.1
  • 50
    • 0036105591 scopus 로고    scopus 로고
    • Vista for comparative sequence-based discovery of functional transcription factor binding sites
    • Loots, G.G. et al.(2002) rVista for comparative sequence-based discovery of functional transcription factor binding sites. Genome Res. 12, 832-839
    • (2002) Genome Res. , vol.12 , pp. 832-839
    • Loots, G.G.1
  • 51
    • 0036107903 scopus 로고    scopus 로고
    • Discovery of regulatory elements by a computational method for phylogenetic footprinting
    • Blanchette, M. and Tompa, M. (2002) Discovery of regulatory elements by a computational method for phylogenetic footprinting. Genome Res. 12, 739-748
    • (2002) Genome Res. , vol.12 , pp. 739-748
    • Blanchette, M.1    Tompa, M.2
  • 52
    • 0034819935 scopus 로고    scopus 로고
    • A predictive model for regulatory sequences directing liver-specific transcription
    • Krivan, W. and Wasserman, W.W. (2001) A predictive model for regulatory sequences directing liver-specific transcription. Genome Res. 11, 1559-1566
    • (2001) Genome Res. , vol.11 , pp. 1559-1566
    • Krivan, W.1    Wasserman, W.W.2
  • 53
    • 0031593199 scopus 로고    scopus 로고
    • Locus control regions of mammalian beta-globin gene clusters: Combining phylogenetic analyses and experimental results to gain functional insights
    • Hardison, R. et al.(1997) Locus control regions of mammalian beta-globin gene clusters: combining phylogenetic analyses and experimental results to gain functional insights. Gene 205, 73-94
    • (1997) Gene , vol.205 , pp. 73-94
    • Hardison, R.1
  • 54
    • 0030966052 scopus 로고    scopus 로고
    • Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains
    • Oeltjen, J.C. et al.(1997) Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains. Genome Res. 7, 315-329
    • (1997) Genome Res. , vol.7 , pp. 315-329
    • Oeltjen, J.C.1
  • 55
    • 0034284481 scopus 로고    scopus 로고
    • Conserved noncoding sequences are reliable guides to regulatory elements
    • Hardison, R.C. (2000) Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet. 16, 369-372
    • (2000) Trends Genet. , vol.16 , pp. 369-372
    • Hardison, R.C.1
  • 56
    • 0034616398 scopus 로고    scopus 로고
    • Identification of a coordinate regulator of cytokines 4, 13, and 5 by cross-species sequence comparisons
    • Loots, G.G. et al.(2000) Identification of a coordinate regulator of cytokines 4, 13, and 5 by cross-species sequence comparisons. Science 288, 136-140
    • (2000) Science , vol.288 , pp. 136-140
    • Loots, G.G.1
  • 57
    • 0033775978 scopus 로고    scopus 로고
    • Human-mouse genome comparisons to locate regulatory sites
    • Wasserman, W.W. et al.(2000) Human-mouse genome comparisons to locate regulatory sites. Nat. Genet. 26, 225-228
    • (2000) Nat. Genet. , vol.26 , pp. 225-228
    • Wasserman, W.W.1
  • 58
    • 0037424621 scopus 로고    scopus 로고
    • Comparative promoter analysis and its application in analysis of PTH-regulated gene expression
    • Qiu, P. et al. (2003) Comparative promoter analysis and its application in analysis of PTH-regulated gene expression. J. Mol. Biol. 326, 1327-1336
    • (2003) J. Mol. Biol. , vol.326 , pp. 1327-1336
    • Qiu, P.1
  • 59
    • 0032562789 scopus 로고    scopus 로고
    • Identification of regulatory regions which confer muscle-specific gene expression
    • Wasserman, W. and Fickett, J.W. (1998) Identification of regulatory regions which confer muscle-specific gene expression. J. Mol. Biol. 278, 167-181
    • (1998) J. Mol. Biol. , vol.278 , pp. 167-181
    • Wasserman, W.1    Fickett, J.W.2
  • 60
    • 0033394535 scopus 로고    scopus 로고
    • Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes
    • Wagner, A. (1999) Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes. Bioinfornmtics 15, 776-784
    • (1999) Bioinfornmtics , vol.15 , pp. 776-784
    • Wagner, A.1
  • 61
    • 0031581855 scopus 로고    scopus 로고
    • Analysis of the distribution of binding sites for a tissue-specific transcription factor in the vertebrate genome
    • Tronche, F. et al.(1997) Analysis of the distribution of binding sites for a tissue-specific transcription factor in the vertebrate genome. J. Mol. Biol. 266, 231-245
    • (1997) J. Mol. Biol. , vol.266 , pp. 231-245
    • Tronche, F.1
  • 62
    • 0029935832 scopus 로고    scopus 로고
    • Coordinate positioning of MEF2 and myogenin binding sites
    • Fickett, J.W. (1996) Coordinate positioning of MEF2 and myogenin binding sites. Gene 172, GC19-GC32
    • (1996) Gene , vol.172
    • Fickett, J.W.1
  • 63
    • 0035946917 scopus 로고    scopus 로고
    • Computer-assisted identification of cell cycle-related genes: New targets for E2F transcription factors
    • Kel, A.E. et al.(2001) Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors. J. Mol. Biol. 309, 99-120
    • (2001) J. Mol. Biol. , vol.309 , pp. 99-120
    • Kel, A.E.1
  • 64
    • 0036067977 scopus 로고    scopus 로고
    • Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model
    • Halfon, M.S. et al.(2002) Computation-based discovery of related transcriptional regulatory modules and motifs using an experimentally validated combinatorial model. Genome Res. 12, 1019-1028
    • (2002) Genome Res. , vol.12 , pp. 1019-1028
    • Halfon, M.S.1
  • 65
    • 0037154273 scopus 로고    scopus 로고
    • Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
    • Berman, B.P. et al.(2002) Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. Proc. Natl. Acad. Sci. U. S. A. 99, 757-762
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 757-762
    • Berman, B.P.1
  • 66
    • 12244259677 scopus 로고    scopus 로고
    • Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites
    • Qin, Z.S. et al.(2003) Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Nat. Biotechnol. 21, 435-439
    • (2003) Nat. Biotechnol. , vol.21 , pp. 435-439
    • Qin, Z.S.1
  • 67
    • 0036777340 scopus 로고    scopus 로고
    • Decoding cis-regulatory DNAs in the Drosophila genome
    • Markstein, M. and Levine, M. (2002) Decoding cis-regulatory DNAs in the Drosophila genome. Curr. Opin. Genet. Dev. 12, 601-606
    • (2002) Curr. Opin. Genet. Dev. , vol.12 , pp. 601-606
    • Markstein, M.1    Levine, M.2


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