-
1
-
-
0028857929
-
Novel NFAT sites that mediate activation of the interleukin-2 promoter in response to T-cell receptor stimulation
-
Rooney J.W., Sun Y.L., Glimcher L.H., Hoey T. Novel NFAT sites that mediate activation of the interleukin-2 promoter in response to T-cell receptor stimulation. Mol. Cell Biol. 15:1995;6299-6310.
-
(1995)
Mol. Cell Biol.
, vol.15
, pp. 6299-6310
-
-
Rooney, J.W.1
Sun, Y.L.2
Glimcher, L.H.3
Hoey, T.4
-
2
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Initial sequencing and analysis of the human genome. Nature. 409:2001;860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
3
-
-
0035895505
-
The sequence of the human genome
-
Venter J.C., Adams M.D., Myers E.W., Li P.W., Mural R.J., Sutton G.G., et al. The sequence of the human genome. Science. 291:2001;1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
-
4
-
-
0032483307
-
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
-
van Helden J., André B., Collado-Vides J. Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol. 281:1998;827-842.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 827-842
-
-
Van Helden, J.1
André, B.2
Collado-Vides, J.3
-
5
-
-
0032826179
-
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
-
Hertz G.Z., Stormo G.D. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics. 15:1999;563-577.
-
(1999)
Bioinformatics
, vol.15
, pp. 563-577
-
-
Hertz, G.Z.1
Stormo, G.D.2
-
6
-
-
0034628901
-
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
-
Hughes J., Estep P., Tavazoie S., Church G. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol. 296:2000;1205-1214.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1205-1214
-
-
Hughes, J.1
Estep, P.2
Tavazoie, S.3
Church, G.4
-
7
-
-
0034564539
-
A statistical method for finding transcription factor binding sites
-
R. Altman, T.L. Bailey, P. Bourne, W. Gribskov, T. Lengauer, I.N. Shindgalov, L.F. Ten Eyck, & H. Weissig. San Diego, CA: AAAI Press
-
Sinha S., Tompa M. A statistical method for finding transcription factor binding sites. Altman R., Bailey T.L., Bourne P., Gribskov W., Lengauer T., Shindgalov I.N., Ten Eyck L.F., Weissig H. Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology. 2000;344-354 AAAI Press, San Diego, CA.
-
(2000)
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology
, pp. 344-354
-
-
Sinha, S.1
Tompa, M.2
-
8
-
-
0033655171
-
ANN-Spec: A method for discovering transcription factor binding sites with improved specificity
-
Workman C.T., Stormo G.D. ANN-Spec: a method for discovering transcription factor binding sites with improved specificity. Pac. Symp. Biocomput. 2000;467-478.
-
(2000)
Pac. Symp. Biocomput.
, pp. 467-478
-
-
Workman, C.T.1
Stormo, G.D.2
-
9
-
-
0033394535
-
Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes
-
Wagner A. Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes. Bioinformatics. 15:1999;776-784.
-
(1999)
Bioinformatics
, vol.15
, pp. 776-784
-
-
Wagner, A.1
-
10
-
-
0035941214
-
Analyses of p53 target genes in the human genome by informatic and microarray approaches
-
Wang L., Wu Q., Qiu P., Mirza A., McGuirk M., Kirschmeier P., et al. Analyses of p53 target genes in the human genome by informatic and microarray approaches. J. Biol. Chem. 276:2001;43604-43610.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 43604-43610
-
-
Wang, L.1
Wu, Q.2
Qiu, P.3
Mirza, A.4
McGuirk, M.5
Kirschmeier, P.6
-
11
-
-
0034819935
-
A predictive model for regulatory sequences directing liver-specific transcription
-
Krivan W., Wasserman W.W. A predictive model for regulatory sequences directing liver-specific transcription. Genome Res. 11:2001;1559-1566.
-
(2001)
Genome Res.
, vol.11
, pp. 1559-1566
-
-
Krivan, W.1
Wasserman, W.W.2
-
12
-
-
0033394535
-
Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes
-
GuhaThakurta D., Stormo G.D. Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes. Bioinformatics. 15:1999;776-784.
-
(1999)
Bioinformatics
, vol.15
, pp. 776-784
-
-
GuhaThakurta, D.1
Stormo, G.D.2
-
13
-
-
0037154273
-
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
-
Berman B.P., Nibu Y., Pfeiffer B.D., Tomancak P., Celniker S.E., Levine M., et al. Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome. Proc. Natl Acad. Sci. USA. 99:2002;757-762.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 757-762
-
-
Berman, B.P.1
Nibu, Y.2
Pfeiffer, B.D.3
Tomancak, P.4
Celniker, S.E.5
Levine, M.6
-
14
-
-
0036261715
-
Computational analysis of composite regulatory elements
-
Qiu P., Ding W., Jiang Y., Greene J., Wang L. Computational analysis of composite regulatory elements. Mamm. Genome. 13:2002;327-332.
-
(2002)
Mamm. Genome
, vol.13
, pp. 327-332
-
-
Qiu, P.1
Ding, W.2
Jiang, Y.3
Greene, J.4
Wang, L.5
-
15
-
-
0031860393
-
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL
-
Heinemeyer T., Wingender E., Reuter I., Hermjakob H., Kel A.E., Kel O.V., et al. Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucl. Acids Res. 26:1998;362-367.
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 362-367
-
-
Heinemeyer, T.1
Wingender, E.2
Reuter, I.3
Hermjakob, H.4
Kel, A.E.5
Kel, O.V.6
-
16
-
-
0035172256
-
The TRANSFAC system on gene expression regulation
-
Wingender E., Chen X., Fricke E., Geffers R., Hehl R., Liebich I., et al. The TRANSFAC system on gene expression regulation. Nucl. Acids Res. 29:2001;281-283.
-
(2001)
Nucl. Acids Res.
, vol.29
, pp. 281-283
-
-
Wingender, E.1
Chen, X.2
Fricke, E.3
Geffers, R.4
Hehl, R.5
Liebich, I.6
-
17
-
-
0031593199
-
Locus control regions of mammalian beta-globin gene clusters: Combining phylogenetic analyses and experimental results to gain functional insights
-
Hardison R., Slightom J.L., Gumucio D.L., Goodman M., Stojanovic N., Miller W. Locus control regions of mammalian beta-globin gene clusters: combining phylogenetic analyses and experimental results to gain functional insights. Gene. 205:1997;73-94.
-
(1997)
Gene
, vol.205
, pp. 73-94
-
-
Hardison, R.1
Slightom, J.L.2
Gumucio, D.L.3
Goodman, M.4
Stojanovic, N.5
Miller, W.6
-
18
-
-
0030966052
-
Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains
-
Oeltjen J.C., Malley T.M., Muzny D.M., Miller W., Gibbs R.A., Belmont J.W. Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains. Genome Res. 7:1997;315-329.
-
(1997)
Genome Res.
, vol.7
, pp. 315-329
-
-
Oeltjen, J.C.1
Malley, T.M.2
Muzny, D.M.3
Miller, W.4
Gibbs, R.A.5
Belmont, J.W.6
-
19
-
-
0034284481
-
Conserved noncoding sequences are reliable guides to regulatory elements
-
Hardison R.C. Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet. 16:2000;369-372.
-
(2000)
Trends Genet.
, vol.16
, pp. 369-372
-
-
Hardison, R.C.1
-
20
-
-
0034616398
-
Identification of a coordinate regulator of cytokines 4, 13, and 5 by cross-species sequence comparisons
-
Loots G.G., Locksley R.M., Blankespoor C.M., Wang Z.E., Miller W., Rubin E.M., Frazer K.A. Identification of a coordinate regulator of cytokines 4, 13, and 5 by cross-species sequence comparisons. Science. 288:2000;136-140.
-
(2000)
Science
, vol.288
, pp. 136-140
-
-
Loots, G.G.1
Locksley, R.M.2
Blankespoor, C.M.3
Wang, Z.E.4
Miller, W.5
Rubin, E.M.6
Frazer, K.A.7
-
21
-
-
0033775978
-
Human-mouse genome comparisons to locate regulatory sites
-
Wasserman W.W., Palumbo M., Thompson W., Fickett J.W., Lawrence C.E. Human-mouse genome comparisons to locate regulatory sites. Nature Genet. 2:2000;225-228.
-
(2000)
Nature Genet.
, vol.2
, pp. 225-228
-
-
Wasserman, W.W.1
Palumbo, M.2
Thompson, W.3
Fickett, J.W.4
Lawrence, C.E.5
-
22
-
-
0036105591
-
RVista for comparative sequence-based discovery of functional transcription factor binding sites
-
Loots G.G., Ovcharenko I., Pachter L., Dubchak I., Rubin E.M. rVista for comparative sequence-based discovery of functional transcription factor binding sites. Genome Res. 12:2002;832-839.
-
(2002)
Genome Res.
, vol.12
, pp. 832-839
-
-
Loots, G.G.1
Ovcharenko, I.2
Pachter, L.3
Dubchak, I.4
Rubin, E.M.5
-
23
-
-
0036107903
-
Discovery of regulatory elements by a computational method for phylogenetic footprinting
-
Blanchette M., Tompa M. Discovery of regulatory elements by a computational method for phylogenetic footprinting. Genome Res. 12:2002;739-748.
-
(2002)
Genome Res.
, vol.12
, pp. 739-748
-
-
Blanchette, M.1
Tompa, M.2
-
24
-
-
0000732090
-
Evolution of protein molecules
-
H.N. Munro. New York, NY: Academic Press
-
Jukes T.H., Cantor C.R. Evolution of protein molecules. Munro H.N. Mammalian Protein Metabolism. 1969;21-123 Academic Press, New York, NY.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-123
-
-
Jukes, T.H.1
Cantor, C.R.2
-
25
-
-
0023472542
-
Parathyroid hormone-like protein from human renal carcinoma cells. Structural and functional homology with parathyroid hormone
-
Strewler G.J., Stern P.H., Jacobs J.W., Eveloff J., Klein R.F., Leung S.C., et al. Parathyroid hormone-like protein from human renal carcinoma cells. Structural and functional homology with parathyroid hormone. J. Clin. Invest. 80:1987;1803-1807.
-
(1987)
J. Clin. Invest.
, vol.80
, pp. 1803-1807
-
-
Strewler, G.J.1
Stern, P.H.2
Jacobs, J.W.3
Eveloff, J.4
Klein, R.F.5
Leung, S.C.6
-
26
-
-
0037045407
-
Parathyroid hormone-dependent signaling pathways regulating genes in bone cells
-
Swarthout J.T., D'Alonzo R.C., Selvamurugan N., Partridge N.C. Parathyroid hormone-dependent signaling pathways regulating genes in bone cells. Gene. 282:2002;1-17.
-
(2002)
Gene
, vol.282
, pp. 1-17
-
-
Swarthout, J.T.1
D'Alonzo, R.C.2
Selvamurugan, N.3
Partridge, N.C.4
-
28
-
-
0034737325
-
Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: A novel context analysis approach
-
Scherf M., Klingenhoff A., Werner T. Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach. J. Mol. Biol. 297:2000;599-606.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 599-606
-
-
Scherf, M.1
Klingenhoff, A.2
Werner, T.3
-
29
-
-
0033926348
-
Interleukin (IL)-4 and IL-13 inhibit the differentiation of murine osteoblastic MC3T3-E1 cells
-
Ura K., Morimoto I., Watanabe K., Saito K., Yanagihara N., Eto S. Interleukin (IL)-4 and IL-13 inhibit the differentiation of murine osteoblastic MC3T3-E1 cells. Endocr. J. 47:2000;293-302.
-
(2000)
Endocr. J.
, vol.47
, pp. 293-302
-
-
Ura, K.1
Morimoto, I.2
Watanabe, K.3
Saito, K.4
Yanagihara, N.5
Eto, S.6
-
30
-
-
0029960055
-
TRANSFAC: A database of transcriptional factors and their DNA binding sites
-
Wingender E., Dietze P., Karas H., Knuppel R. TRANSFAC: a database of transcriptional factors and their DNA binding sites. Nucl. Acids Res. 24:1996;238-241.
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 238-241
-
-
Wingender, E.1
Dietze, P.2
Karas, H.3
Knuppel, R.4
-
31
-
-
0031573382
-
A tool for analyzing and annotating genomic sequences
-
Huang X., Adams M.D., Zhou H., Kerlavage A.R. A tool for analyzing and annotating genomic sequences. Genomics. 46:1997;37-45.
-
(1997)
Genomics
, vol.46
, pp. 37-45
-
-
Huang, X.1
Adams, M.D.2
Zhou, H.3
Kerlavage, A.R.4
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