-
1
-
-
0014027490
-
The generation of energy by the arginine dihydrolase pathway in Mycoplasma hominis 07
-
Schimke, R. T., Berlin, C. M., Sweeney, E. W., and Carroll, W. R. (1966) The generation of energy by the arginine dihydrolase pathway in Mycoplasma hominis 07. J. Biol. Chem. 241, 2228-2236.
-
(1966)
J. Biol. Chem
, vol.241
, pp. 2228-2236
-
-
Schimke, R.T.1
Berlin, C.M.2
Sweeney, E.W.3
Carroll, W.R.4
-
2
-
-
0018077228
-
Arginine deiminase from Mycoplasma arthritidis. Structure-activity relationships among substrates and competitive inhibitors
-
Smith, D. W., Ganaway, R. L., and Fahrney, D. E. (1978) Arginine deiminase from Mycoplasma arthritidis. Structure-activity relationships among substrates and competitive inhibitors. J. Biol. Chem. 253, 6016-6020.
-
(1978)
J. Biol. Chem
, vol.253
, pp. 6016-6020
-
-
Smith, D.W.1
Ganaway, R.L.2
Fahrney, D.E.3
-
3
-
-
0022531132
-
Biosynthesis and metabolism of arginine in bacteria
-
Cunin, R., Glansdorff, N., Pierard, A., and Stalon, V. (1986) Biosynthesis and metabolism of arginine in bacteria. Microbiol. Rev. 50, 314-352.
-
(1986)
Microbiol. Rev
, vol.50
, pp. 314-352
-
-
Cunin, R.1
Glansdorff, N.2
Pierard, A.3
Stalon, V.4
-
4
-
-
0036435297
-
Evolution of arginine deiminase (ADI) pathway genes
-
Zuniga, M., Perez, G., and Gonzalez-Candelas, F. (2002) Evolution of arginine deiminase (ADI) pathway genes. Mol Phylogenet. Evol. 25, 429-444.
-
(2002)
Mol Phylogenet. Evol
, vol.25
, pp. 429-444
-
-
Zuniga, M.1
Perez, G.2
Gonzalez-Candelas, F.3
-
5
-
-
0036840306
-
Isolation and molecular analysis of the gene cluster for the arginine deiminase system from Streptococcus gordonii DL1
-
Dong, Y., Chen, Y. Y., Snyder, J. A., and Burne, R. A. (2002) Isolation and molecular analysis of the gene cluster for the arginine deiminase system from Streptococcus gordonii DL1. Appl. Environ. Microbiol. 68, 5549-5553.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 5549-5553
-
-
Dong, Y.1
Chen, Y.Y.2
Snyder, J.A.3
Burne, R.A.4
-
6
-
-
30744434891
-
Structure, regulation, and putative function of the arginine deiminase system of Streptococcus suis
-
Gruening, P., Fulde, M., Valentin-Weigand, P., and Goethe, R. (2006) Structure, regulation, and putative function of the arginine deiminase system of Streptococcus suis. J. Bacteriol. 188, 361-369.
-
(2006)
J. Bacteriol
, vol.188
, pp. 361-369
-
-
Gruening, P.1
Fulde, M.2
Valentin-Weigand, P.3
Goethe, R.4
-
7
-
-
34547791813
-
Staphylococcus aureus ArcR controls expression of the arginine deiminase operon
-
Makhlin, J., Kofman, T., Borovok, I., Kohler, C., Engelmann, S., Cohen, G., and Aharonowitz, Y. (2007) Staphylococcus aureus ArcR controls expression of the arginine deiminase operon. J. Bacteriol. 189, 5976-5986.
-
(2007)
J. Bacteriol
, vol.189
, pp. 5976-5986
-
-
Makhlin, J.1
Kofman, T.2
Borovok, I.3
Kohler, C.4
Engelmann, S.5
Cohen, G.6
Aharonowitz, Y.7
-
8
-
-
33751116307
-
Reporter metabolite analysis of transcriptional profiles of a Staphylococcus aureus strain with normal phenotype and its isogenic hemB mutant displaying the small-colony-variant phenotype
-
Seggewiss, J., Becker, K., Kotte, O., Eisenacher, M., Yazdi, M. R., Fischer, A., McNamara, P., Al Laham, N., Proctor, R., Peters, G., Heinemann, M., and von Eiff, C. (2006) Reporter metabolite analysis of transcriptional profiles of a Staphylococcus aureus strain with normal phenotype and its isogenic hemB mutant displaying the small-colony-variant phenotype. J. Bacteriol. 188, 7765-7777.
-
(2006)
J. Bacteriol
, vol.188
, pp. 7765-7777
-
-
Seggewiss, J.1
Becker, K.2
Kotte, O.3
Eisenacher, M.4
Yazdi, M.R.5
Fischer, A.6
McNamara, P.7
Al Laham, N.8
Proctor, R.9
Peters, G.10
Heinemann, M.11
von Eiff, C.12
-
9
-
-
33646767413
-
Virulence-associated gene profiling of Streptococcus suis isolates by PCR
-
Silva, L. M., Baums, C. G., Rehm, T., Wisselink, H. J., Goethe, R., and Valentin-Weigand, P. (2006) Virulence-associated gene profiling of Streptococcus suis isolates by PCR. Vet. Microbiol. 115, 117-127.
-
(2006)
Vet. Microbiol
, vol.115
, pp. 117-127
-
-
Silva, L.M.1
Baums, C.G.2
Rehm, T.3
Wisselink, H.J.4
Goethe, R.5
Valentin-Weigand, P.6
-
10
-
-
0032549032
-
Cloning and expression of a prokaryotic enzyme, arginine deiminase, from a primitive eukaryote Giardia intestinalis
-
Knodler, L. A., Sekyere, E. O., Stewart, T. S., Schofield, P. J., and Edwards, M. R. (1998) Cloning and expression of a prokaryotic enzyme, arginine deiminase, from a primitive eukaryote Giardia intestinalis. J. Biol. Chem. 273, 4470-4477.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 4470-4477
-
-
Knodler, L.A.1
Sekyere, E.O.2
Stewart, T.S.3
Schofield, P.J.4
Edwards, M.R.5
-
11
-
-
0034933985
-
Biology of Giardia lamblia
-
Adam, R. D. (2001) Biology of Giardia lamblia. Clin. Microbiol. Rev. 14, 447-475.
-
(2001)
Clin. Microbiol. Rev
, vol.14
, pp. 447-475
-
-
Adam, R.D.1
-
12
-
-
34848894621
-
-
Morrison, H. G., McArthur, A. G., Gillin, F. D., Aley, S. B., Adam, R. D., Olsen, G. J., Best, A. A., Cande, W. Z., Chen, F., Cipriano, M. J., Davids, B. J., Dawson, S. C., Elmendorf, H. G., Hehl, A. B., Holder, M. E., Huse, S. M., Kim, U. U., Lasek-Nesselquist, E., Manning, G., Nigam, A., Nixon, J. E., Palm, D., Passamaneck, N. E., Prabhu, A., Reich, C. I., Reiner, D. S., Samuelson, J., Svard, S. G., and Sogin, M. L. (2007) Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. Science 317, 1921-1926.
-
Morrison, H. G., McArthur, A. G., Gillin, F. D., Aley, S. B., Adam, R. D., Olsen, G. J., Best, A. A., Cande, W. Z., Chen, F., Cipriano, M. J., Davids, B. J., Dawson, S. C., Elmendorf, H. G., Hehl, A. B., Holder, M. E., Huse, S. M., Kim, U. U., Lasek-Nesselquist, E., Manning, G., Nigam, A., Nixon, J. E., Palm, D., Passamaneck, N. E., Prabhu, A., Reich, C. I., Reiner, D. S., Samuelson, J., Svard, S. G., and Sogin, M. L. (2007) Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. Science 317, 1921-1926.
-
-
-
-
13
-
-
0037187008
-
Characterization of mycoplasma arginine deiminase expressed in E. coli and its inhibitory regulation of nitric oxide synthesis
-
Noh, E. J., Kang, S. W., Shin, Y. J., Kim, D. C., Park, I. S., Kim, M. Y., Chun, B. G., and Min, B. H. (2002) Characterization of mycoplasma arginine deiminase expressed in E. coli and its inhibitory regulation of nitric oxide synthesis. Mol. Cells 13, 137-143.
-
(2002)
Mol. Cells
, vol.13
, pp. 137-143
-
-
Noh, E.J.1
Kang, S.W.2
Shin, Y.J.3
Kim, D.C.4
Park, I.S.5
Kim, M.Y.6
Chun, B.G.7
Min, B.H.8
-
14
-
-
0037563766
-
Identification of immunoreactive proteins during acute human giardiasis
-
Palm, J. E., Weiland, M. E., Griffiths, W. J., Ljungstrom, I., and Svard, S. G. (2003) Identification of immunoreactive proteins during acute human giardiasis. J. Infect. Dis. 187, 1849-1859.
-
(2003)
J. Infect. Dis
, vol.187
, pp. 1849-1859
-
-
Palm, J.E.1
Weiland, M.E.2
Griffiths, W.J.3
Ljungstrom, I.4
Svard, S.G.5
-
15
-
-
0035424604
-
A novel superfamily of enzymes that catalyze the modification of guanidino groups
-
Shirai, H., Blundell, T. L., and Mizuguchi, K. (2001) A novel superfamily of enzymes that catalyze the modification of guanidino groups. Trends Biochem. Sci. 26, 465-468.
-
(2001)
Trends Biochem. Sci
, vol.26
, pp. 465-468
-
-
Shirai, H.1
Blundell, T.L.2
Mizuguchi, K.3
-
16
-
-
0033214074
-
Identification of two human dimethylarginine dimethylaminohydrolases with distinct tissue distributions and homology with microbial arginine deiminases
-
Leiper, J. M., Santa Maria, J., Chubb, A., MacAllister, R. J., Charles, I. G., Whitley, G. S., and Vallance, P. (1999) Identification of two human dimethylarginine dimethylaminohydrolases with distinct tissue distributions and homology with microbial arginine deiminases. Biochem. J. 343, 209-214.
-
(1999)
Biochem. J
, vol.343
, pp. 209-214
-
-
Leiper, J.M.1
Santa Maria, J.2
Chubb, A.3
MacAllister, R.J.4
Charles, I.G.5
Whitley, G.S.6
Vallance, P.7
-
17
-
-
0032864893
-
Identification of microbial dimethylarginine dimethylaminohydrolase enzymes
-
Santa Maria, J., Vallance, P., Charles, I. G., and Leiper, J. M. (1999) Identification of microbial dimethylarginine dimethylaminohydrolase enzymes. Mol. Microbiol. 33, 1278-1289.
-
(1999)
Mol. Microbiol
, vol.33
, pp. 1278-1289
-
-
Santa Maria, J.1
Vallance, P.2
Charles, I.G.3
Leiper, J.M.4
-
18
-
-
23244447251
-
Kinetic characterization of protein arginine deiminase 4: A transcriptional corepressor implicated in the onset and progression of rheumatoid arthritis
-
Kearney, P. L., Bhatia, M., Jones, N. G., Yuan, L., Glascock, M. C., Catchings, K. L., Yamada, M., and Thompson, P. R. (2005) Kinetic characterization of protein arginine deiminase 4: A transcriptional corepressor implicated in the onset and progression of rheumatoid arthritis. Biochemistry 44, 10570-10582.
-
(2005)
Biochemistry
, vol.44
, pp. 10570-10582
-
-
Kearney, P.L.1
Bhatia, M.2
Jones, N.G.3
Yuan, L.4
Glascock, M.C.5
Catchings, K.L.6
Yamada, M.7
Thompson, P.R.8
-
19
-
-
0037351889
-
Identification of the putrescine biosynthetic genes in Pseudomonas aeruginosa and characterization of agmatine deiminase and N-carbamoylputrescine amidohydrolase of the arginine decarboxylase pathway
-
Nakada, Y., and Itoh, Y. (2003) Identification of the putrescine biosynthetic genes in Pseudomonas aeruginosa and characterization of agmatine deiminase and N-carbamoylputrescine amidohydrolase of the arginine decarboxylase pathway. Microbiology 149, 707-714.
-
(2003)
Microbiology
, vol.149
, pp. 707-714
-
-
Nakada, Y.1
Itoh, Y.2
-
20
-
-
18144380237
-
Crystal structure of N-succinylarginine dihydrolase AstB, bound to substrate and product, an enzyme from the arginine catabolic pathway of Escherichia coli
-
Tocilj, A., Schrag, J. D., Li, Y., Schneider, B. L., Reitzer, L., Matte, A., and Cygler, M. (2005) Crystal structure of N-succinylarginine dihydrolase AstB, bound to substrate and product, an enzyme from the arginine catabolic pathway of Escherichia coli. J. Biol. Chem. 280, 15800-15808.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 15800-15808
-
-
Tocilj, A.1
Schrag, J.D.2
Li, Y.3
Schneider, B.L.4
Reitzer, L.5
Matte, A.6
Cygler, M.7
-
21
-
-
0036883907
-
Blocking NO synthesis: How, where and why?
-
Vallance, P., and Leiper, J. (2002) Blocking NO synthesis: How, where and why? Nat. Rev. Drug Discovery 1, 939-950.
-
(2002)
Nat. Rev. Drug Discovery
, vol.1
, pp. 939-950
-
-
Vallance, P.1
Leiper, J.2
-
22
-
-
33751001725
-
Histone citrullination by protein arginine deiminase: Is arginine methylation a green light or a roadblock? ACS
-
Thompson, P. R., and Fast, W. (2006) Histone citrullination by protein arginine deiminase: Is arginine methylation a green light or a roadblock? ACS Chem. Biol. 1, 433-441.
-
(2006)
Chem. Biol
, vol.1
, pp. 433-441
-
-
Thompson, P.R.1
Fast, W.2
-
23
-
-
5044228483
-
Human PAD4 regulates histone arginine methylation levels via demethylimination
-
Wang, Y., Wysocka, J., Sayegh, J., Lee, Y. H., Perlin, J. R., Leonelli, L., Sonbuchner, L. S., McDonald, C. H., Cook, R. G., Dou, Y., Roeder, R. G., Clarke, S., Stallcup, M. R., Allis, C. D., and Coonrod, S. A. (2004) Human PAD4 regulates histone arginine methylation levels via demethylimination. Science 306, 279-283.
-
(2004)
Science
, vol.306
, pp. 279-283
-
-
Wang, Y.1
Wysocka, J.2
Sayegh, J.3
Lee, Y.H.4
Perlin, J.R.5
Leonelli, L.6
Sonbuchner, L.S.7
McDonald, C.H.8
Cook, R.G.9
Dou, Y.10
Roeder, R.G.11
Clarke, S.12
Stallcup, M.R.13
Allis, C.D.14
Coonrod, S.A.15
-
24
-
-
0031974911
-
Citrulline is an essential constituent of antigenic determinants recognized by rheumatoid arthritis-specific autoantibodies
-
Schellekens, G. A., de Jong, B. A., van den Hoogen, F. H., van de Putte, L. B., and van Venrooij, W. J. (1998) Citrulline is an essential constituent of antigenic determinants recognized by rheumatoid arthritis-specific autoantibodies. J. Clin. Invest. 101, 273-281.
-
(1998)
J. Clin. Invest
, vol.101
, pp. 273-281
-
-
Schellekens, G.A.1
de Jong, B.A.2
van den Hoogen, F.H.3
van de Putte, L.B.4
van Venrooij, W.J.5
-
26
-
-
1842450302
-
Crystal structures of arginine deiminase with covalent reaction intermediates: Implications for catalytic mechanism
-
Das, K., Butler, G. H., Kwiatkowski, V., Clark, A. D., Jr., Yadav, P., and Arnold, E. (2004) Crystal structures of arginine deiminase with covalent reaction intermediates: Implications for catalytic mechanism. Structure 12, 657-667.
-
(2004)
Structure
, vol.12
, pp. 657-667
-
-
Das, K.1
Butler, G.H.2
Kwiatkowski, V.3
Clark Jr., A.D.4
Yadav, P.5
Arnold, E.6
-
27
-
-
0032559012
-
Crystal structure of L-arginine:inosamine-phosphate amidinotransferase StrB1 from Streptomyces griseus: An enzyme involved in streptomycin biosynthesis
-
Fritsche, E., Bergner, A., Humm, A., Piepersberg, W., and Huber, R. (1998) Crystal structure of L-arginine:inosamine-phosphate amidinotransferase StrB1 from Streptomyces griseus: An enzyme involved in streptomycin biosynthesis. Biochemistry 37, 17664-17672.
-
(1998)
Biochemistry
, vol.37
, pp. 17664-17672
-
-
Fritsche, E.1
Bergner, A.2
Humm, A.3
Piepersberg, W.4
Huber, R.5
-
28
-
-
0033613922
-
The ligand-induced structural changes of human L-arginine:glycine amidinotransferase. A mutational and crystallographic study
-
Fritsche, E., Humm, A., and Huber, R. (1999) The ligand-induced structural changes of human L-arginine:glycine amidinotransferase. A mutational and crystallographic study. J. Biol. Chem. 274, 3026-3032.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 3026-3032
-
-
Fritsche, E.1
Humm, A.2
Huber, R.3
-
29
-
-
1842639583
-
Structural insight into arginine degradation by arginine deiminase, an antibacterial and parasite drug target
-
Galkin, A., Kulakova, L., Sarikaya, E., Lim, K., Howard, A., and Herzberg, O. (2004) Structural insight into arginine degradation by arginine deiminase, an antibacterial and parasite drug target. J. Biol. Chem. 279, 14001-14008.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 14001-14008
-
-
Galkin, A.1
Kulakova, L.2
Sarikaya, E.3
Lim, K.4
Howard, A.5
Herzberg, O.6
-
30
-
-
26644450503
-
Crystal structures representing the Michaelis complex and the thiouronium reaction intermediate of Pseudomonas aeruginosa arginine deiminase
-
Galkin, A., Lu, X., Dunaway-Mariano, D., and Herzberg, O. (2005) Crystal structures representing the Michaelis complex and the thiouronium reaction intermediate of Pseudomonas aeruginosa arginine deiminase. J. Biol. Chem. 280, 34080-34087.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 34080-34087
-
-
Galkin, A.1
Lu, X.2
Dunaway-Mariano, D.3
Herzberg, O.4
-
31
-
-
0030989923
-
Structure and reaction mechanism of L-arginine:glycine amidinotransferase
-
Humm, A., Fritsche, E., and Steinbacher, S. (1997) Structure and reaction mechanism of L-arginine:glycine amidinotransferase. Biol. Chem. 378, 193-197.
-
(1997)
Biol. Chem
, vol.378
, pp. 193-197
-
-
Humm, A.1
Fritsche, E.2
Steinbacher, S.3
-
32
-
-
33846912925
-
The gene cluster for agmatine catabolism of Enterococcus faecalis: Study of recombinant putrescine transcarbamylase and agmatine deiminase and a snapshot of agmatine deiminase catalyzing its reaction
-
Llacer, J. L., Polo, L. M., Tavarez, S., Alarcon, B., Hilario, R., and Rubio, V. (2007) The gene cluster for agmatine catabolism of Enterococcus faecalis: Study of recombinant putrescine transcarbamylase and agmatine deiminase and a snapshot of agmatine deiminase catalyzing its reaction. J. Bacteriol. 189, 1254-1265.
-
(2007)
J. Bacteriol
, vol.189
, pp. 1254-1265
-
-
Llacer, J.L.1
Polo, L.M.2
Tavarez, S.3
Alarcon, B.4
Hilario, R.5
Rubio, V.6
-
33
-
-
33749359452
-
Inhibitors and inactivators of protein arginine deiminase 4: Functional and structural characterization
-
Luo, Y., Arita, K., Bhatia, M., Knuckley, B., Lee, Y. H., Stallcup, M. R., Sato, M., and Thompson, P. R. (2006) Inhibitors and inactivators of protein arginine deiminase 4: Functional and structural characterization. Biochemistry 45, 11727-11736.
-
(2006)
Biochemistry
, vol.45
, pp. 11727-11736
-
-
Luo, Y.1
Arita, K.2
Bhatia, M.3
Knuckley, B.4
Lee, Y.H.5
Stallcup, M.R.6
Sato, M.7
Thompson, P.R.8
-
34
-
-
0034885255
-
Structural insights into the hydrolysis of cellular nitric oxide synthase inhibitors by dimethylarginine dimethylaminohydrolase
-
Murray-Rust, J., Leiper, J., McAlister, M., Phelan, J., Tilley, S., Santa Maria, J., Vallance, P., and McDonald, N. (2001) Structural insights into the hydrolysis of cellular nitric oxide synthase inhibitors by dimethylarginine dimethylaminohydrolase. Nat. Struct. Biol. 8, 679-683.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 679-683
-
-
Murray-Rust, J.1
Leiper, J.2
McAlister, M.3
Phelan, J.4
Tilley, S.5
Santa Maria, J.6
Vallance, P.7
McDonald, N.8
-
35
-
-
2342449187
-
Arginine deiminase uses an active-site cysteine in nucleophilic catalysis of L-arginine hydrolysis
-
Lu, X., Galkin, A., Herzberg, O., and Dunaway-Mariano, D. (2004) Arginine deiminase uses an active-site cysteine in nucleophilic catalysis of L-arginine hydrolysis. J. Am. Chem. Soc. 126, 5374-5375.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 5374-5375
-
-
Lu, X.1
Galkin, A.2
Herzberg, O.3
Dunaway-Mariano, D.4
-
36
-
-
18244386728
-
Characterization of a transient covalent adduct formed during dimethylarginine dimethylaminohydrolase catalysis
-
Stone, E. M., Person, M. D., Costello, N. J., and Fast, W. (2005) Characterization of a transient covalent adduct formed during dimethylarginine dimethylaminohydrolase catalysis. Biochemistry 44, 7069-7078.
-
(2005)
Biochemistry
, vol.44
, pp. 7069-7078
-
-
Stone, E.M.1
Person, M.D.2
Costello, N.J.3
Fast, W.4
-
37
-
-
31544455800
-
Kinetic analysis of Pseudomonas aeruginosa arginine deiminase mutants and alternate substrates provides insight into structural determinants of function
-
Lu, X., Li, L., Wu, R., Feng, X., Li, Z., Yang, H., Wang, C., Guo, H., Galkin, A., Herzberg, O., Mariano, P. S., Martin, B. M., and Dunaway-Mariano, D. (2006) Kinetic analysis of Pseudomonas aeruginosa arginine deiminase mutants and alternate substrates provides insight into structural determinants of function. Biochemistry 45, 1162-1172.
-
(2006)
Biochemistry
, vol.45
, pp. 1162-1172
-
-
Lu, X.1
Li, L.2
Wu, R.3
Feng, X.4
Li, Z.5
Yang, H.6
Wang, C.7
Guo, H.8
Galkin, A.9
Herzberg, O.10
Mariano, P.S.11
Martin, B.M.12
Dunaway-Mariano, D.13
-
38
-
-
36849001753
-
Inhibition of human dimethylarginine dimethylamionhydrolase-1 by S-nitroso-L-homocysteine and hydrogen peroxide: Analysis, quantification, and implications for hyperhomocysteinemia
-
Hong, L., and Fast, W. (2007) Inhibition of human dimethylarginine dimethylamionhydrolase-1 by S-nitroso-L-homocysteine and hydrogen peroxide: Analysis, quantification, and implications for hyperhomocysteinemia. J. Biol. Chem. 282, 34684-34692.
-
(2007)
J. Biol. Chem
, vol.282
, pp. 34684-34692
-
-
Hong, L.1
Fast, W.2
-
39
-
-
28444435875
-
-
Lu, X., Li, L., Feng, X., Wu, Y., Dunaway-Mariano, D., Engen, J. R., and Mariano, P. S. (2005) L-Canavanine is a time-controlled mechanism-based inhibitor of Pseudomonas aeruginosa arginine deiminase. J. Am. Chem. Soc. 127, 16412-16413.
-
Lu, X., Li, L., Feng, X., Wu, Y., Dunaway-Mariano, D., Engen, J. R., and Mariano, P. S. (2005) L-Canavanine is a time-controlled mechanism-based inhibitor of Pseudomonas aeruginosa arginine deiminase. J. Am. Chem. Soc. 127, 16412-16413.
-
-
-
-
40
-
-
31944448153
-
A fluoroacetamidine-based inactivator of protein arginine deiminase 4: Design, synthesis, and in vitro and in vivo evaluation
-
Luo, Y., Knuckley, B., Lee, Y. H., Stallcup, M. R., and Thompson, P. R. (2006) A fluoroacetamidine-based inactivator of protein arginine deiminase 4: Design, synthesis, and in vitro and in vivo evaluation. J. Am. Chem. Soc. 128, 1092-1093.
-
(2006)
J. Am. Chem. Soc
, vol.128
, pp. 1092-1093
-
-
Luo, Y.1
Knuckley, B.2
Lee, Y.H.3
Stallcup, M.R.4
Thompson, P.R.5
-
41
-
-
27144463085
-
Inactivation of two diverse enzymes in the amidinotransferase superfamily by 2-chloroacetamidine: Dimethylargininase and peptidylarginine deiminase
-
Stone, E. M., Schaller, T. H., Bianchi, H., Person, M. D., and Fast, W. (2005) Inactivation of two diverse enzymes in the amidinotransferase superfamily by 2-chloroacetamidine: Dimethylargininase and peptidylarginine deiminase. Biochemistry 44, 13744-13752.
-
(2005)
Biochemistry
, vol.44
, pp. 13744-13752
-
-
Stone, E.M.1
Schaller, T.H.2
Bianchi, H.3
Person, M.D.4
Fast, W.5
-
42
-
-
33846250027
-
Insight into the catalytic mechanism of arginine deiminase: Functional studies on the crucial sites
-
Wei, Y., Zhou, H., Sun, Y., He, Y., and Luo, Y. (2007) Insight into the catalytic mechanism of arginine deiminase: Functional studies on the crucial sites. Proteins 66, 740-750.
-
(2007)
Proteins
, vol.66
, pp. 740-750
-
-
Wei, Y.1
Zhou, H.2
Sun, Y.3
He, Y.4
Luo, Y.5
-
43
-
-
34147183761
-
Molecular dynamics and density functional studies of substrate binding and catalysis of arginine deiminase
-
Wang, C., Xu, D., Zhang, L., Xie, D., and Guo, H. (2007) Molecular dynamics and density functional studies of substrate binding and catalysis of arginine deiminase. J. Phys. Chem. B 111, 3267-3273.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 3267-3273
-
-
Wang, C.1
Xu, D.2
Zhang, L.3
Xie, D.4
Guo, H.5
-
44
-
-
39049108427
-
Inactivation of microbial arginine deiminases by L-canavanine
-
Li, L., Li, Z., Chen, D., Lu, X., Wright, E. C., Solberg, N. O., Green-Church, K. B., Zhang, L., Galkin, A., Kulakova, L., Herzberg, O., Dunaway-Mariano, D., and Mariano, P. S. (2008) Inactivation of microbial arginine deiminases by L-canavanine. J. Am. Chem. Soc. 130, 1918-1931.
-
(2008)
J. Am. Chem. Soc
, vol.130
, pp. 1918-1931
-
-
Li, L.1
Li, Z.2
Chen, D.3
Lu, X.4
Wright, E.C.5
Solberg, N.O.6
Green-Church, K.B.7
Zhang, L.8
Galkin, A.9
Kulakova, L.10
Herzberg, O.11
Dunaway-Mariano, D.12
Mariano, P.S.13
-
45
-
-
0014622121
-
Modified methods for the determination of carbamyl aspartate
-
Prescott, L. M., and Jones, M. E. (1969) Modified methods for the determination of carbamyl aspartate. Anal. Biochem. 32, 408-419.
-
(1969)
Anal. Biochem
, vol.32
, pp. 408-419
-
-
Prescott, L.M.1
Jones, M.E.2
-
46
-
-
0017725220
-
Arginine deiminase from Mycoplasma arthritidis. Evidence for multiple forms
-
Weickmann, J. L., and Fahrney, D. E. (1977) Arginine deiminase from Mycoplasma arthritidis. Evidence for multiple forms. J. Biol. Chem. 252, 2615-2620.
-
(1977)
J. Biol. Chem
, vol.252
, pp. 2615-2620
-
-
Weickmann, J.L.1
Fahrney, D.E.2
-
47
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S., and Karplus, M. (1983) CHARMM: A program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem. 4, 187-217.
-
(1983)
J. Comput. Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
48
-
-
0022068152
-
Active site dynamics in protein molecules: A stochastic boundary molecular-dynamics approach
-
Brooks, C. L., Brunger, A., and Karplus, M. (1985) Active site dynamics in protein molecules: A stochastic boundary molecular-dynamics approach. Biopolymers 24, 843-865.
-
(1985)
Biopolymers
, vol.24
, pp. 843-865
-
-
Brooks, C.L.1
Brunger, A.2
Karplus, M.3
-
49
-
-
0017100947
-
Theoretical studies of enzymatic reactions: Dielectric, electrostation and steric stabilization of carbonium ion in the reaction of lysozyme
-
Warshal, A., and Levitt, M. (1976) Theoretical studies of enzymatic reactions: Dielectric, electrostation and steric stabilization of carbonium ion in the reaction of lysozyme. J. Mol. Biol. 103, 227-249.
-
(1976)
J. Mol. Biol
, vol.103
, pp. 227-249
-
-
Warshal, A.1
Levitt, M.2
-
50
-
-
84962367344
-
Methods and applications of combined quantum mechanical and molecular mechanical potentials
-
Lipkowitz, K. B, and Boyd, D. B, Eds, pp, VCH, New York
-
Gao, J. (1996) Methods and applications of combined quantum mechanical and molecular mechanical potentials, in Reviews in Computational Chemistry (Lipkowitz, K. B., and Boyd, D. B., Eds.) pp 119-185, VCH, New York.
-
(1996)
Reviews in Computational Chemistry
, pp. 119-185
-
-
Gao, J.1
-
51
-
-
0037718593
-
Parameterization of semiempirical methods to treat nucleophilic attacks to biological phosphates: AM1/d parameters for phosphorus
-
Lopez, X., and York, D. M. (2003) Parameterization of semiempirical methods to treat nucleophilic attacks to biological phosphates: AM1/d parameters for phosphorus. Theor. Chem. Acc. 109, 149-159.
-
(2003)
Theor. Chem. Acc
, vol.109
, pp. 149-159
-
-
Lopez, X.1
York, D.M.2
-
52
-
-
0000189651
-
Density-functional thermochemistry. III. The role of exact exchange
-
Becke, A. D. (1993) Density-functional thermochemistry. III. The role of exact exchange. J. Chem. Phys. 98, 5648-5652.
-
(1993)
J. Chem. Phys
, vol.98
, pp. 5648-5652
-
-
Becke, A.D.1
-
53
-
-
0345491105
-
Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density
-
Lee, C., Yang, W., and Parr, R. G. (1988) Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Phys. Rev. B 37, 785-789.
-
(1988)
Phys. Rev. B
, vol.37
, pp. 785-789
-
-
Lee, C.1
Yang, W.2
Parr, R.G.3
-
54
-
-
0041784950
-
-
MacKerell, A. D., Jr., Bashford, D., Bellott, D., Dunbrack, R. L., Jr., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., Joseph-McCarthy, D., Kuchnir, L., Kuczera, K., Lau, F. T. K., Mattos, C., Michnick, S., Ngo, T., Nguyen, D. T., Prodhom, B., Reiher, W. E., III, Roux, B., Schlenkrich, M., Smith, J. C., Stote, R., Straub, J., Watanabe, M., Wiorkiewicz-Kuczera, J., Yin, D., and Karplus, M. (1998) All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B 102, 3586-3616.
-
MacKerell, A. D., Jr., Bashford, D., Bellott, D., Dunbrack, R. L., Jr., Evanseck, J. D., Field, M. J., Fischer, S., Gao, J., Guo, H., Ha, S., Joseph-McCarthy, D., Kuchnir, L., Kuczera, K., Lau, F. T. K., Mattos, C., Michnick, S., Ngo, T., Nguyen, D. T., Prodhom, B., Reiher, W. E., III, Roux, B., Schlenkrich, M., Smith, J. C., Stote, R., Straub, J., Watanabe, M., Wiorkiewicz-Kuczera, J., Yin, D., and Karplus, M. (1998) All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B 102, 3586-3616.
-
-
-
-
55
-
-
84986513644
-
A combined quantum mechanical and molecular mechanical potential for molecular dynamics simulations
-
Field, M. J., Bash, P. A., and Karplus, M. (1990) A combined quantum mechanical and molecular mechanical potential for molecular dynamics simulations. J. Comput. Chem. 11, 700-733.
-
(1990)
J. Comput. Chem
, vol.11
, pp. 700-733
-
-
Field, M.J.1
Bash, P.A.2
Karplus, M.3
-
56
-
-
0000049872
-
Enzyme mechanisms with hybrid quantum and molecular mechanical potentials. I. Theoretical considerations
-
Eurenius, K. P., Chatfield, D. C., Brooks, B. R., and Hodoscek, M. (1996) Enzyme mechanisms with hybrid quantum and molecular mechanical potentials. I. Theoretical considerations. Int. J. Quantum Chem. 60, 1189-1200.
-
(1996)
Int. J. Quantum Chem
, vol.60
, pp. 1189-1200
-
-
Eurenius, K.P.1
Chatfield, D.C.2
Brooks, B.R.3
Hodoscek, M.4
-
57
-
-
0015962432
-
Spectrophotometric determination of mercaptide ion, an activated form of SH-group in thiol enzymens
-
Polgar, L. (1974) Spectrophotometric determination of mercaptide ion, an activated form of SH-group in thiol enzymens. FEBS Lett. 38, 187-190.
-
(1974)
FEBS Lett
, vol.38
, pp. 187-190
-
-
Polgar, L.1
-
58
-
-
0024588467
-
Spectroscopic and kinetic evidence for the thiolate anion of glutathione at the active site of glutathione S-transferase
-
Graminski, G. F., Kubo, Y., and Armstrong, R. N. (1989) Spectroscopic and kinetic evidence for the thiolate anion of glutathione at the active site of glutathione S-transferase. Biochemistry 28, 3562-3568.
-
(1989)
Biochemistry
, vol.28
, pp. 3562-3568
-
-
Graminski, G.F.1
Kubo, Y.2
Armstrong, R.N.3
-
59
-
-
0027325607
-
Peculiar spectroscopic and kinetic properties of Cys-47 in human placental glutathione transferase: Evidence for an atypical thiolate ion pair near the active site
-
Lo Bello, M., Parker, M. W., Desideri, A., Polticelli, F., Falconi, M., Del Boccio, G., Pennelli, A., Federici, G., and Ricci, G. (1993) Peculiar spectroscopic and kinetic properties of Cys-47 in human placental glutathione transferase: Evidence for an atypical thiolate ion pair near the active site. J. Biol. Chem. 268, 19033-19038.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 19033-19038
-
-
Lo Bello, M.1
Parker, M.W.2
Desideri, A.3
Polticelli, F.4
Falconi, M.5
Del Boccio, G.6
Pennelli, A.7
Federici, G.8
Ricci, G.9
-
60
-
-
0028360184
-
Reactivity and ionization of the active site cysteine residues of DsbA, a protein required for disulfide bond formation in vivo
-
Nelson, J. W., and Creighton, T. E. (1994) Reactivity and ionization of the active site cysteine residues of DsbA, a protein required for disulfide bond formation in vivo. Biochemistry 33, 5974-5983.
-
(1994)
Biochemistry
, vol.33
, pp. 5974-5983
-
-
Nelson, J.W.1
Creighton, T.E.2
-
61
-
-
0035807060
-
Thiolate-imidazolium ion pair is not an obligatory catalytic entity of cysteine peptidases: The active site of picornain 3C
-
Sarkany, Z., Szeltner, Z., and Polgar, L. (2001) Thiolate-imidazolium ion pair is not an obligatory catalytic entity of cysteine peptidases: The active site of picornain 3C. Biochemistry 40, 10601-10606.
-
(2001)
Biochemistry
, vol.40
, pp. 10601-10606
-
-
Sarkany, Z.1
Szeltner, Z.2
Polgar, L.3
-
62
-
-
33646371495
-
Substrate-assisted cysteine deprotonation in the mechanism of dimethylargininase (DDAH) from Pseudomonas aeruginosa
-
Stone, E. M., Costello, A. L., Tierney, D. L., and Fast, W. (2006) Substrate-assisted cysteine deprotonation in the mechanism of dimethylargininase (DDAH) from Pseudomonas aeruginosa. Biochemistry 45, 5618-5630.
-
(2006)
Biochemistry
, vol.45
, pp. 5618-5630
-
-
Stone, E.M.1
Costello, A.L.2
Tierney, D.L.3
Fast, W.4
-
64
-
-
0031024788
-
Effects of buried charged groups on cysteine thiol ionization and reactivity in Escherichia coli thioredoxin: Structural and functional characterization of mutants of Asp 26 and Lys 57
-
Dyson, H. J., Jeng, M. F., Tennant, L. L., Slaby, I., Lindell, M., Cui, D. S., Kuprin, S., and Holmgren, A. (1997) Effects of buried charged groups on cysteine thiol ionization and reactivity in Escherichia coli thioredoxin: Structural and functional characterization of mutants of Asp 26 and Lys 57. Biochemistry 36, 2622-2636.
-
(1997)
Biochemistry
, vol.36
, pp. 2622-2636
-
-
Dyson, H.J.1
Jeng, M.F.2
Tennant, L.L.3
Slaby, I.4
Lindell, M.5
Cui, D.S.6
Kuprin, S.7
Holmgren, A.8
-
65
-
-
29244464347
-
a: Functional implications
-
a: Functional implications. Biochemistry 44, 16385-16391.
-
(2005)
Biochemistry
, vol.44
, pp. 16385-16391
-
-
Tolbert, B.S.1
Tajc, S.G.2
Webb, H.3
Snyder, J.4
Nielsen, J.E.5
Miller, B.L.6
Basavappa, R.7
-
66
-
-
0034680253
-
Determination of the pKa value of C115 in MurA (UDP-N-acetylglucosamine enolpyruvyltransferase) from Enterobacter cloacae
-
Krekel, F., Samland, A. K., Macheroux, P., Amrhein, N., and Evans, J. N. (2000) Determination of the pKa value of C115 in MurA (UDP-N-acetylglucosamine enolpyruvyltransferase) from Enterobacter cloacae. Biochemistry 39, 12671-12677.
-
(2000)
Biochemistry
, vol.39
, pp. 12671-12677
-
-
Krekel, F.1
Samland, A.K.2
Macheroux, P.3
Amrhein, N.4
Evans, J.N.5
-
67
-
-
34249877154
-
Protein arginine deiminase 4: Evidence for a reverse protonation mechanism
-
Knuckley, B., Bhatia, M., and Thompson, P. R. (2007) Protein arginine deiminase 4: Evidence for a reverse protonation mechanism. Biochemistry 46, 6578-6587.
-
(2007)
Biochemistry
, vol.46
, pp. 6578-6587
-
-
Knuckley, B.1
Bhatia, M.2
Thompson, P.R.3
|