메뉴 건너뛰기




Volumn 83, Issue 1, 2008, Pages 77-88

Mosaic genealogy of the Mus musculus genome revealed by 21 nuclear genes from its three subspecies

Author keywords

Inbred strains; Introgression; Mouse; Phylogenetic network

Indexed keywords

MITOCHONDRIAL DNA;

EID: 42049124098     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.83.77     Document Type: Article
Times cited : (14)

References (58)
  • 1
  • 3
    • 34249093040 scopus 로고    scopus 로고
    • Reduced X-linked diversity in derived populations of house mice
    • Baines, J. F., and Harr, B. (2007) Reduced X-linked diversity in derived populations of house mice. Genetics 175, 1911-1921.
    • (2007) Genetics , vol.175 , pp. 1911-1921
    • Baines, J.F.1    Harr, B.2
  • 5
    • 0021854913 scopus 로고
    • Most classical Mus musculus domesticus laboratory mouse strains carry a Mus musculus musculus Y chromosome
    • Bishop, C. E., Boursot, P., Baron, B., Bonhomme, F., and Hatat, D. (1985) Most classical Mus musculus domesticus laboratory mouse strains carry a Mus musculus musculus Y chromosome. Nature 315, 70-72.
    • (1985) Nature , vol.315 , pp. 70-72
    • Bishop, C.E.1    Boursot, P.2    Baron, B.3    Bonhomme, F.4    Hatat, D.5
  • 6
    • 0030759288 scopus 로고    scopus 로고
    • Discordant phylogeographic patterns between the Y chromosome and mitochondrial DNA in the house mouse: Selection on the Y chromosome?
    • Boissinot, S., and Boursot, P. (1997) Discordant phylogeographic patterns between the Y chromosome and mitochondrial DNA in the house mouse: selection on the Y chromosome? Genetics 146, 1019-1034.
    • (1997) Genetics , vol.146 , pp. 1019-1034
    • Boissinot, S.1    Boursot, P.2
  • 7
    • 0002960636 scopus 로고
    • The house mouse as a ring species?
    • eds, K. Moriwaki, T. Shiroishi, and H. Yonekawa pp, Japan Sci. Soc. Press, Tokyo/S Karger, Basel
    • Bonhomme, F., Anand, R., Darviche, D., Din, W., and Boursot, P. (1994) The house mouse as a ring species? In: Genetics in Wild Mice (eds.: K. Moriwaki, T. Shiroishi, and H. Yonekawa) pp. 13-23. Japan Sci. Soc. Press, Tokyo/S Karger, Basel.
    • (1994) Genetics in Wild Mice , pp. 13-23
    • Bonhomme, F.1    Anand, R.2    Darviche, D.3    Din, W.4    Boursot, P.5
  • 9
    • 0002966244 scopus 로고
    • The wild house mouse and its relatives
    • eds, M. F. Lyon, and A. G. Searle, pp, Gustav Fischer Verlag, Stuttgart
    • Bonhomme, F., and Guenet, J.-L. (1989) The wild house mouse and its relatives. In: Genetic Variants and Strains of the Laboratory Mouse (eds.: M. F. Lyon, and A. G. Searle), pp. 649-662. Gustav Fischer Verlag, Stuttgart.
    • (1989) Genetic Variants and Strains of the Laboratory Mouse , pp. 649-662
    • Bonhomme, F.1    Guenet, J.-L.2
  • 10
    • 0002292795 scopus 로고
    • The polyphyletic origin of laboratory inbred mice and their rate of evolution
    • Bonhomme, F., Guenet, J.-L., Dod, B., Moriwaki, K., and Bulfield, G. (1987) The polyphyletic origin of laboratory inbred mice and their rate of evolution. Biol. J. Linnean Soc. 30, 51-58.
    • (1987) Biol. J. Linnean Soc , vol.30 , pp. 51-58
    • Bonhomme, F.1    Guenet, J.-L.2    Dod, B.3    Moriwaki, K.4    Bulfield, G.5
  • 11
    • 17144444020 scopus 로고
    • Genetical variation and polyphyletic origin in Japanese Mus musculus
    • Bonhomme, F., Miyashita, N., Boursot, P., Catalan, J., and Moriwaki, K. (1989) Genetical variation and polyphyletic origin in Japanese Mus musculus. Heredity 63, 299-308.
    • (1989) Heredity , vol.63 , pp. 299-308
    • Bonhomme, F.1    Miyashita, N.2    Boursot, P.3    Catalan, J.4    Moriwaki, K.5
  • 13
    • 0024838604 scopus 로고
    • Variations of a Y chromosome repeated sequence across subspecies of Mus musculus
    • Boursot, P., Bonhomme, F., Catalan, J., and Moriwaki, K. (1989) Variations of a Y chromosome repeated sequence across subspecies of Mus musculus. Heredity 63, 289-297.
    • (1989) Heredity , vol.63 , pp. 289-297
    • Boursot, P.1    Bonhomme, F.2    Catalan, J.3    Moriwaki, K.4
  • 15
    • 0036900082 scopus 로고    scopus 로고
    • Quantifying the slightly deleterious mutation model of molecular evolution
    • Eyre-Walker, A., Keightley, P. D., Smith, N. G. C., and Gaffney, D. (2002) Quantifying the slightly deleterious mutation model of molecular evolution. Mol. Biol. Evol. 19, 2142-2149.
    • (2002) Mol. Biol. Evol , vol.19 , pp. 2142-2149
    • Eyre-Walker, A.1    Keightley, P.D.2    Smith, N.G.C.3    Gaffney, D.4
  • 18
    • 4444329913 scopus 로고    scopus 로고
    • Segmental phylogenetic relationships of inbred mouse strains revealed by fine-scale analysis of sequence variation across 4.6Mb of mouse genome
    • Frazer, K. A., Wade, C. M., Hinds, D. A., Patil, N., Cox, D. R. and Daly, M. J. (2004) Segmental phylogenetic relationships of inbred mouse strains revealed by fine-scale analysis of sequence variation across 4.6Mb of mouse genome. Genome Res. 14, 1493-1500.
    • (2004) Genome Res , vol.14 , pp. 1493-1500
    • Frazer, K.A.1    Wade, C.M.2    Hinds, D.A.3    Patil, N.4    Cox, D.R.5    Daly, M.J.6
  • 19
    • 0023122930 scopus 로고
    • Interspecific DNA transfer and the colonization of Scandinavia by mice
    • Gyllensten, U., and Wilson, A. C. (1987) Interspecific DNA transfer and the colonization of Scandinavia by mice. Gen. Res. 49, 25-29.
    • (1987) Gen. Res , vol.49 , pp. 25-29
    • Gyllensten, U.1    Wilson, A.C.2
  • 20
    • 3142714474 scopus 로고    scopus 로고
    • Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis
    • Hey, J., and Nielsen, R. (2004) Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167, 747-760.
    • (2004) Genetics , vol.167 , pp. 747-760
    • Hey, J.1    Nielsen, R.2
  • 21
    • 33847253975 scopus 로고    scopus 로고
    • Integration within Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
    • Hey, J., and Nielsen, R. (2007) Integration within Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proc. Natl. Acad. Sci. USA 104, 2785-2790.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 2785-2790
    • Hey, J.1    Nielsen, R.2
  • 23
    • 0028906291 scopus 로고
    • New methods for estimating the numbers of synonymous and nonsynonymous substitutions
    • Ina, Y. (1995) New methods for estimating the numbers of synonymous and nonsynonymous substitutions. J. Mol. Evol. 40, 190-226.
    • (1995) J. Mol. Evol , vol.40 , pp. 190-226
    • Ina, Y.1
  • 24
    • 0033856141 scopus 로고    scopus 로고
    • Multi-phenotype behavioral characterization of inbred strains derived from wild stocks of Mus musculus
    • Koide, T., Moriwaki, K., Ikeda, K., Niki, H., and Shiroishi, T. (2000) Multi-phenotype behavioral characterization of inbred strains derived from wild stocks of Mus musculus. Mamm. Genome 11, 664-670.
    • (2000) Mamm. Genome , vol.11 , pp. 664-670
    • Koide, T.1    Moriwaki, K.2    Ikeda, K.3    Niki, H.4    Shiroishi, T.5
  • 25
    • 0030076124 scopus 로고    scopus 로고
    • Rates of nucleotide substitution in primates and rodents and the generation-time effecthypothesis
    • Li, W. H., Ellsworth, D. L., Krushkal, J., Chang, B. H., and Hewett-Emmett, D. (1996) Rates of nucleotide substitution in primates and rodents and the generation-time effecthypothesis. Mol. Phylogenet. Evol. 5, 182-187.
    • (1996) Mol. Phylogenet. Evol , vol.5 , pp. 182-187
    • Li, W.H.1    Ellsworth, D.L.2    Krushkal, J.3    Chang, B.H.4    Hewett-Emmett, D.5
  • 26
    • 0030879635 scopus 로고    scopus 로고
    • Cloning, characterization, and mapping of a murine promiscuous chemokine receptor gene: Homolog of the human Duffy gene
    • Luo, H., Chaudhuri, A., Johnson, K. R., Neote, K., Zbrzezna, V., He, Y., and Pogo, A. O. (1997) Cloning, characterization, and mapping of a murine promiscuous chemokine receptor gene: homolog of the human Duffy gene. Genome Res. 7, 932-941.
    • (1997) Genome Res , vol.7 , pp. 932-941
    • Luo, H.1    Chaudhuri, A.2    Johnson, K.R.3    Neote, K.4    Zbrzezna, V.5    He, Y.6    Pogo, A.O.7
  • 27
    • 0002965894 scopus 로고
    • Taxonomy
    • eds, H. L. Forter, H. J. D. Small, and J. G. Fox, pp, Academic Press, New York
    • Marshall, J. T. (1981) Taxonomy. In: The Mouse in Biomedical Research (eds.: H. L. Forter, H. J. D. Small, and J. G. Fox), pp. 17-26. Academic Press, New York.
    • (1981) The Mouse in Biomedical Research , pp. 17-26
    • Marshall, J.T.1
  • 28
    • 0031936505 scopus 로고    scopus 로고
    • Rodent Y chromosome TSPY gene is functional in rat and non-functional in mouse
    • Mazeyrat, S., and Mitchell, M. J. (1998) Rodent Y chromosome TSPY gene is functional in rat and non-functional in mouse. Hum. Mol. Genet. 7, 557-562.
    • (1998) Hum. Mol. Genet , vol.7 , pp. 557-562
    • Mazeyrat, S.1    Mitchell, M.J.2
  • 29
    • 85105749629 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald, J. H., and Kreitman, M. (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature 354, 114-116.
    • (1991) Nature , vol.354 , pp. 114-116
    • McDonald, J.H.1    Kreitman, M.2
  • 33
    • 0027299216 scopus 로고
    • Experimental evidence of genetic determinism in high susceptibility to intestinal pinworm infection in mice: A hybrid zone model
    • Moulia, C., le Brun, N., Dallas, J., Orth, A., and Renaud, F. (1993) Experimental evidence of genetic determinism in high susceptibility to intestinal pinworm infection in mice: a hybrid zone model. Parasitol. 106, 387-393.
    • (1993) Parasitol , vol.106 , pp. 387-393
    • Moulia, C.1    le Brun, N.2    Dallas, J.3    Orth, A.4    Renaud, F.5
  • 34
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing Consortium
    • Mouse Genome Sequencing Consortium (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562.
    • (2002) Nature , vol.420 , pp. 520-562
  • 37
    • 0031662638 scopus 로고    scopus 로고
    • Genetic variation and phylogeography of central Asian and other house mice, including a major new mitochondrial lineage in Yemen
    • Prager, E. M., Orrego, C., and Sage, R. D. (1998) Genetic variation and phylogeography of central Asian and other house mice, including a major new mitochondrial lineage in Yemen. Genetics 150, 835-861.
    • (1998) Genetics , vol.150 , pp. 835-861
    • Prager, E.M.1    Orrego, C.2    Sage, R.D.3
  • 39
    • 0029666034 scopus 로고    scopus 로고
    • Mitochondrial DNA sequence variation in the eastern house mouse Mus musculus: Comparison with other house mice and report of a 75-bp tandem repeat
    • Prager, E. M., Tichy, H., and Sage, R. D. (1996) Mitochondrial DNA sequence variation in the eastern house mouse Mus musculus: comparison with other house mice and report of a 75-bp tandem repeat. Genetics 143, 427-446.
    • (1996) Genetics , vol.143 , pp. 427-446
    • Prager, E.M.1    Tichy, H.2    Sage, R.D.3
  • 40
    • 0025278861 scopus 로고
    • Differences in the organization and chromosomal allocation of satellite DNA between the European long tailed house mice Mus domesticus and Mus musculus
    • Redi, C. A., Garagna, S., Della, Valle, G., Bottiroli, G., Dell'Orto, P., Viale, G., Peverali, F. A., Raimondi, E., and Forejt, J. (1990) Differences in the organization and chromosomal allocation of satellite DNA between the European long tailed house mice Mus domesticus and Mus musculus. Chromosoma. 99, 11-17.
    • (1990) Chromosoma , vol.99 , pp. 11-17
    • Redi, C.1    Garagna, A.2    Della, S.3    Valle, G.4    Bottiroli, G.5    Dell'Orto, P.6    Viale, G.7    Peverali, F.A.8    Raimondi, E.9    Forejt, J.10
  • 41
    • 12044251127 scopus 로고
    • House mice as models in systematic biology
    • Sage, R. D., Atchley, W. R., and Ernesto, C. (1993) House mice as models in systematic biology. Syst. Biol. 42, 523-561.
    • (1993) Syst. Biol , vol.42 , pp. 523-561
    • Sage, R.D.1    Atchley, W.R.2    Ernesto, C.3
  • 42
    • 0022462919 scopus 로고
    • Genetic analysis of a hybrid zone between domesticus and musculus mice (Mus musculus complex): Hemoglobin polymorphisms
    • Sage, R. D., Whitney, J. B. R., and Wilson, A. C. (1986) Genetic analysis of a hybrid zone between domesticus and musculus mice (Mus musculus complex): hemoglobin polymorphisms. Curr. Top. Microbiol. Immunol. 127, 75-85.
    • (1986) Curr. Top. Microbiol. Immunol , vol.127 , pp. 75-85
    • Sage, R.D.1    Whitney, J.B.R.2    Wilson, A.C.3
  • 43
    • 0029934468 scopus 로고    scopus 로고
    • Reconstruction of gene trees from sequence data
    • Saitou, N. (1996) Reconstruction of gene trees from sequence data. Methods Enzymol. 266, 427-449.
    • (1996) Methods Enzymol , vol.266 , pp. 427-449
    • Saitou, N.1
  • 44
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 45
    • 0030930981 scopus 로고    scopus 로고
    • Evolution of primate ABO blood group genes and their homologous genes
    • Saitou, N., and Yamam oto, F. (1997) Evolution of primate ABO blood group genes and their homologous genes. Mol. Biol. Evol. 14, 399-411.
    • (1997) Mol. Biol. Evol , vol.14 , pp. 399-411
    • Saitou, N.1    Yamam oto, F.2
  • 48
    • 0003061123 scopus 로고
    • Molecular phylogenies in the genus Mus: Comparative analysis of electrophoretic, scnDNA hybridization, and mtDNA RFLP data
    • She, J. X., Bonhomme, F., Boursot, P., Thaler, L., and Catzeflis, F. (1990) Molecular phylogenies in the genus Mus: Comparative analysis of electrophoretic, scnDNA hybridization, and mtDNA RFLP data. Biol. J. Linnean Soc. 41, 83-103.
    • (1990) Biol. J. Linnean Soc , vol.41 , pp. 83-103
    • She, J.X.1    Bonhomme, F.2    Boursot, P.3    Thaler, L.4    Catzeflis, F.5
  • 49
    • 0022655697 scopus 로고
    • Evolutionary implication of heterogeneity of the nontranscribed spacer region of ribosomal DNA repeating units in various subspecies of Mus musculus
    • Suzuki, H., Miyashita, N., Moriwaki, K., Kominami, R., Muramatsu, M., Kanehisa, T., Bonhomme, F., Petras, M. L., Yu, Z. C., and Lu, D. Y. (1986) Evolutionary implication of heterogeneity of the nontranscribed spacer region of ribosomal DNA repeating units in various subspecies of Mus musculus. Mol. Biol. Evol. 3, 126-137.
    • (1986) Mol. Biol. Evol , vol.3 , pp. 126-137
    • Suzuki, H.1    Miyashita, N.2    Moriwaki, K.3    Kominami, R.4    Muramatsu, M.5    Kanehisa, T.6    Bonhomme, F.7    Petras, M.L.8    Yu, Z.C.9    Lu, D.Y.10
  • 50
    • 1542316900 scopus 로고    scopus 로고
    • Genetic variation versus recombination rate in a structured population of mice
    • Takahashi, A., Liu, Y.-H., and Saitou, N. (2004) Genetic variation versus recombination rate in a structured population of mice. Mol. Biol. Evol. 21, 404-409.
    • (2004) Mol. Biol. Evol , vol.21 , pp. 404-409
    • Takahashi, A.1    Liu, Y.-H.2    Saitou, N.3
  • 51
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 53
  • 55
    • 0035958013 scopus 로고    scopus 로고
    • Murine equivalent of the human histo-blood group ABO gene is a cis-AB gene and encodes a glycosyltransferase with both A and B transferase activity
    • Yamamoto, M., Lin, X.-H., Kominato, Y., Hata, Y., Noda, R., Saitou, N., and Yamamoto, F. (2001) Murine equivalent of the human histo-blood group ABO gene is a cis-AB gene and encodes a glycosyltransferase with both A and B transferase activity. J. Biol. Chem. 276, 13701-13708.
    • (2001) J. Biol. Chem , vol.276 , pp. 13701-13708
    • Yamamoto, M.1    Lin, X.-H.2    Kominato, Y.3    Hata, Y.4    Noda, R.5    Saitou, N.6    Yamamoto, F.7
  • 56
    • 0019605284 scopus 로고
    • Evolutionary relationships among five subspecies of Mus musculus based on restriction enzyme cleavage patterns of mitochondrial DNA
    • Yonekawa, H., Moriwaki, K., Gotoh, O., Hayashi, J. I., Watanabe, J., Miyashita, N., Petras, M. L., and Tagashira, Y. (1981) Evolutionary relationships among five subspecies of Mus musculus based on restriction enzyme cleavage patterns of mitochondrial DNA. Genetics 98, 1-16.
    • (1981) Genetics , vol.98 , pp. 1-16
    • Yonekawa, H.1    Moriwaki, K.2    Gotoh, O.3    Hayashi, J.I.4    Watanabe, J.5    Miyashita, N.6    Petras, M.L.7    Tagashira, Y.8
  • 58
    • 14644427261 scopus 로고    scopus 로고
    • A high-resolution multistrain haplotype analysis of laboratory mouse genome reveals three distinctive genetic variation patterns
    • Zhang, J., Hunter, K. W., Gandolph, M., Rowe, W. L., Finney, R. P., Kelley, J. M., Edmonson, M., and Buetow, K. H. (2005) A high-resolution multistrain haplotype analysis of laboratory mouse genome reveals three distinctive genetic variation patterns. Genome Res. 15, 241-249.
    • (2005) Genome Res , vol.15 , pp. 241-249
    • Zhang, J.1    Hunter, K.W.2    Gandolph, M.3    Rowe, W.L.4    Finney, R.P.5    Kelley, J.M.6    Edmonson, M.7    Buetow, K.H.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.