Kinetic and thermodynamic characterization of CoII-substrate radical pair formation in coenzyme B12-dependent ethanolamine ammonia-lyase in a cryosolvent system by using time-resolved, full-spectrum continuous-wave electron paramagnetic resonance spectroscopy

Journal of the American Chemical Society

Volumn 130, Issue 14, 2008, Pages 4846-4858

  Wang, Miao ^a   Warncke, Kurt ^a  

^a EMORY UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DISSOCIATION; ENZYMES; ORGANIC SOLVENTS; RATE CONSTANTS; SPECTROSCOPIC ANALYSIS; THERMODYNAMICS;

SUBSTRATE RADICAL PAIR FORMATION; TERNARY COMPLEX; WAVE ELECTRON PARAMAGNETIC RESONANCE SPECTROSCOPY;

CARBON MONOXIDE;

COBALT; COBAMAMIDE; DIMETHYL SULFOXIDE; ETHANOLAMINE AMMONIA LYASE; HOLOENZYME; PROPANOLAMINE DERIVATIVE; SOLVENT; WATER;

ARTICLE; CATALYSIS; CHEMICAL BOND; CONCENTRATION (PARAMETERS); DISSOCIATION; ELECTRON SPIN RESONANCE; ENERGY; ENTHALPY; ENTROPY; ENZYME KINETICS; ENZYME SUBSTRATE; ENZYME SUBSTRATE COMPLEX; RADICAL REACTION; SALMONELLA TYPHIMURIUM; SIGNAL NOISE RATIO; TEMPERATURE; TEMPERATURE DEPENDENCE; THERMODYNAMICS;

COBALT; COBAMIDES; ELECTRON SPIN RESONANCE SPECTROSCOPY; ETHANOLAMINE AMMONIA-LYASE; KINETICS; SALMONELLA TYPHIMURIUM; THERMODYNAMICS;

EID: 41849125708     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja710069y     Document Type: Article

References (61)

1. Banerjee, R. Chemistry and Biochemistry of B12; Wiley: New York, 1999.
2. Brown, K. L. Chem. Rev. 2005, 105, 2075-2149.
3. Hay, B. P.; Finke, R. G. Polyhedron 1988, 7, 1469-1481.
4. B12; Dolphin, D., Ed.; Wiley: New York, 1982; Vol. 2.
5. Hubbard, T. J. P.; Ailey, B.; Brenner, S. E.; Murzin, A. G.; Chothia, C. Nucleic Acids Res. 1999, 27, 254-256.
6. Sun, L.; Warncke, K. Proteins: Struct., Funct., Bioinf. 2006, 64, 308-319.
7. Bandarian, V.; Reed, G. H. In Chemistry and Biochemistry of BI2; Banerjee, R., Ed.; Wiley and Sons: New York, 1999; pp 811-833.
8. Toraya, T. Chem. Rev. 2003, 103, 2095-2127.
9. Bradbeer, C. J. Biol. Chem. 1965, 240, 4669-4674.
10. Padmakumar, R.; Padmakumar, R.; Banerjee, R. Biochemistry 1997, 36, 3713-3718.
11. Marsh, E. N. G.; Ballou, D. P. Biochemistry 1998, 37, 11864-11872.
12. Licht, S. S.; Booker, S.; Stubbe, J. Biochemistry 1999, 38, 1221-1233.
13. Bandarian, V.; Reed, G. H. Biochemistry 2000, 39, 12069-12075.
14. Boas, J. F.; Hicks, P. R.; Pilbrow, J. R.; Smith, T. D. J. Chem. Soc., Faraday Trans. 2 1978, 74, 417-431.
15. Gerfen, G. J.; Licht, S.; Willems, J. P.; Hoffman, B. M.; Stubbe, J. J. Am. Chem. Soc. 1996, 118, 8192-8197.
16. Licht, S.; Gerfen, G. J.; Stubbe, J. Science 1996, 271, 477-481.
17. Canfield, J. M.; Warncke, K. J. Phys. Chem. B 2002, 106, 8831-8841.
18. Bandarian, V.; Reed, G. H. Biochemistry 2002, 41, 8580-8588.
19. Licht, S.; Lawrence, C. C.; Stubbe, J. Biochemistry 1999, 38, 1234-1242.
20. Brown, K. L.; Cheng, S.; Marques, H. M. Inorg. Chem. 1995, 35, 217-222.
21. Stubbe, J.; van der Donk, W. A. Chem. Rev. 1998, 98, 705-762.
22. Finke, R. G.; Hay, B. P. Inorg. Chem. 1984, 23, 3041-3043.
23. Halpern, J.; Kim, S.-H.; Leung, T. W. J. Am. Chem. Soc. 1984, 106, 8317-8319.
24. Hay, B. P.; Finke, R. G. J. Am. Chem. Soc. 1986, 108, 4820-4829.
25. Douzou, P. Cryobiochemistry: An Introduction: Academic Press: New York, 1977.
26. Travers, F.; Bertrand, R.; Roseau, G.; Vanthoai, N. Eur. J. Biochem. 1978, 88, 523-528.
27. Lakey, J. R. T.; Anderson, T. J.; Rajotte, R. V. Transplantation 2001, 72, 1005-1011.
28. Faust, L. R. P.; Connor, J. A.; Roof, D. M.; Hoch, J. A.; Babior, B. M. J. Biol. Chem. 1990, 265, 12462-12466.
29. Faust, L. P.; Babior, B. M. Arch. Biochem. Biophys. 1992, 294, 50-54.
30. Tesi, C.; Travers, F.; Barman, T. Biochemistry 1990, 29, 1846-1852.
31. Bicknell, R.; Waley, S. G. Biochemistry 1985, 24, 6876-6887.
32. Feig, A. L.; Ammons, G. E.; Uhlenbeck, O. C. RNA 1998, 4, 1251-1258.
33. Douzou, P.; Sireix, R.; Travers, F. Proc. Natl. Acad. Sci. U.S.A. 1970, 66, 787-792.
34. Mustafi, D.; Hofer, J. E.; Huang, W.; Palzkill, T.; Makinen, M. W. Spectrochim. Acta, Part A 2004, 60, 1279-1289.
35. Babior, B. M. J. Biol. Chem. 1970, 245, 1755-1766.
36. Babior, B. M.; Krouwer, J. S. CRC Crit. Rev. Biochem. 1979, 6, 35-102.
37. Babior, B. M. In B12; Dolphin, D., Ed.; Wiley: New York, 1982; Vol. 2, pp 263-387.
38. Sabatinni, D. D.; Barnett, R. J.; Bensch, K. G. Anat. Rec. 1962, 142, 274.
39. Hollaway, M. R.; Johnson, A. W.; Lappert, M. F.; Wallis, O. C. Eur. J. Biochem. 1980, 111, 177-188.
40. Bandarian, V.; Reed, G. H. Biochemistry 1999, 38, 12394-12402.
41. Hollaway, M. R.; White, H. A.; Joblin, K. N.; Johnson, A. W.; Lappert, M. F.; Wallis, O. C. Eur. J. Biochem. 1978, 82, 143-154.
42. Moore, J. W.; Pearson, R. G. Kinetics and Mechanism; Wiley & Sons: New York, 1981.
43. Babior, B. M.; Moss, T. H.; Orme-Johnson, W. H.; Beinert, H. J. Biol. Chem. 1974, 249, 4537-4544.
44. Pilbrow, J. R. In B12; Dolphin, D., Ed.; Wiley: New York, 1982; Vol. 1, pp 431-462.
45. Canfield, J. M.; Warncke, K. J. Phys. Chem. B 2005, 109, 3053-3046.
46. Shibata, N.; Masuda, J.; Tobimatsu, T.; Toraya, T.; Suto, K.; Morimoto, Y.; Yasuoka, N. Structure 1999, 7, 997-1008.
47. Wetmore, S. D.; Smith, D. M.; Bennett, J. T.; Radom, L. J. Am. Chem. Soc. 2002, 124, 14054-14065.
48. Sandala, G. M.; Smith, D. M.; Radom, L. J. Am. Chem. Soc. 2005, 127, 8856-8864.
49. Semialjac, M.; Schwarz, H. J. Org. Chem. 2003, 68, 6967-6983.
50. Poyner, R. R.; Anderson, M. A.; Bandarian, V.; Cleland, W. W.; Reed, G. H. J. Am. Chem. Soc. 2006, 128, 7120-7121.
51. Lukoyanov, D.; Barney, B. M.; Dean, D. R.; Seefeldt, L. C.; Hoffman, B. M. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 1451-1455.
52. Wallis, O. C.; Bray, R. C.; Gutteridge, S.; Hollaway, M. R. Eur. J. Biochem. 1982, 125, 299-303.
53. Atherton, N. M. Principles of Electron Spin Resonance; Ellis Horwood: New York, 1993.
54. McMillen, D. F.; Golden, D. M. Annu. Rev. Phys. Chem. 1982, 33, 493-532.
55. Berkowitz, J.; Ellison, G. B.; Gutman, D. J. Phys. Chem. 1994, 98, 2744-2765.
56. Semialjac, M.; Schwarz, H. Chem. - Eur. J. 2004, 10, 2781-2788.
57. Warncke, K.; Utada, A. S. J. Am. Chem. Soc. 2001, 123, 8564-8572.
58. Carty, T. J.; Babior, B. M.; Abeles, R. H. J. Biol. Chem. 1971, 246, 6313-6317.
59. Graves, S. W.; Fox, J. A.; Babior, B. M. Biochemistry 1980, 19, 3630-3633.
60. Ke, S.-C.; Torrent, M.; Museav, D. C.; Morokuma, K.; Warncke, K. Biochemistry 1999, 38, 12681-12689.
61. Abend, A.; Bandarian, V.; Nitsche, R.; Stupperich, E.; Retey, J.; Reed, G. H. Arch. Biochem. Biophys. 1999, 370, 138-141.