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Volumn 162, Issue 1, 2008, Pages 94-107

Structures of open (R) and close (T) states of prephenate dehydratase (PDT)-Implication of allosteric regulation by l-phenylalanine

Author keywords

ACT domain; Allosteric regulation; l Phe binding; PDT domain; Prephenate dehydratase structure

Indexed keywords

DIMER; PHENYLALANINE; PREPHENATE DEHYDRATASE;

EID: 41849090791     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2007.11.009     Document Type: Article
Times cited : (31)

References (56)
  • 1
    • 0033574503 scopus 로고    scopus 로고
    • Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches
    • Aravind L., and Koonin E.V. Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. Journal of Molecular Biology 287 (1999) 1023-1040
    • (1999) Journal of Molecular Biology , vol.287 , pp. 1023-1040
    • Aravind, L.1    Koonin, E.V.2
  • 4
    • 0021455085 scopus 로고
    • Absolute dependence of phenylalanine and tyrosine biosynthetic enzyme on tryptophan in Candida maltosa
    • Bode R., Melo C., and Birnbaum D. Absolute dependence of phenylalanine and tyrosine biosynthetic enzyme on tryptophan in Candida maltosa. Hoppe-Seyler's Zeitschrift fèur Physiologische Chemie 365 (1984) 799-803
    • (1984) Hoppe-Seyler's Zeitschrift fèur Physiologische Chemie , vol.365 , pp. 799-803
    • Bode, R.1    Melo, C.2    Birnbaum, D.3
  • 8
    • 0037424269 scopus 로고    scopus 로고
    • Crystal structure of ATP phosphoribosyltransferase from Mycobacterium tuberculosis
    • Cho Y., Sharma V., and Sacchettini J.C. Crystal structure of ATP phosphoribosyltransferase from Mycobacterium tuberculosis. The Journal of Biological Chemistry 278 (2003) 8333-8339
    • (2003) The Journal of Biological Chemistry , vol.278 , pp. 8333-8339
    • Cho, Y.1    Sharma, V.2    Sacchettini, J.C.3
  • 9
    • 0027992458 scopus 로고
    • The monofunctional chorismate mutase from Bacillus subtilis. Structure determination of chorismate mutase and its complexes with a transition state analog and prephenate, and implications for the mechanism of the enzymatic reaction
    • Chook Y.M., Gray J.V., Ke H., and Lipscomb W.N. The monofunctional chorismate mutase from Bacillus subtilis. Structure determination of chorismate mutase and its complexes with a transition state analog and prephenate, and implications for the mechanism of the enzymatic reaction. Journal of Molecular Biology 240 (1994) 476-500
    • (1994) Journal of Molecular Biology , vol.240 , pp. 476-500
    • Chook, Y.M.1    Gray, J.V.2    Ke, H.3    Lipscomb, W.N.4
  • 10
    • 0010085225 scopus 로고
    • The biosynthesis of phenylalanine and tyrosine; enzymes converting chorismic acid into prephenic acid and their relationships to prephenate dehydratase and prephenate dehydrogenase
    • Cotton R.G., and Gibson F. The biosynthesis of phenylalanine and tyrosine; enzymes converting chorismic acid into prephenic acid and their relationships to prephenate dehydratase and prephenate dehydrogenase. Biochimica et Biophysica Acta 100 (1965) 76-88
    • (1965) Biochimica et Biophysica Acta , vol.100 , pp. 76-88
    • Cotton, R.G.1    Gibson, F.2
  • 11
    • 0015523372 scopus 로고
    • Chorismate mutase-prephenate dehydratase from Escherichia coli K-12 I. Purification, molecular weight, and amino acid composition
    • Davidson B.E., Blackburn E.H., and Dopheide T.A. Chorismate mutase-prephenate dehydratase from Escherichia coli K-12 I. Purification, molecular weight, and amino acid composition. The Journal of Biological Chemistry 247 (1972) 4441-4446
    • (1972) The Journal of Biological Chemistry , vol.247 , pp. 4441-4446
    • Davidson, B.E.1    Blackburn, E.H.2    Dopheide, T.A.3
  • 12
    • 0015523331 scopus 로고
    • Chorismate mutase-prephenate dehydratase from Escherichia coli K-12 II. Kinetic properties
    • Dopheide T.A., Crewther P., and Davidson B.E. Chorismate mutase-prephenate dehydratase from Escherichia coli K-12 II. Kinetic properties. The Journal of Biological Chemistry 247 (1972) 4447-4452
    • (1972) The Journal of Biological Chemistry , vol.247 , pp. 4447-4452
    • Dopheide, T.A.1    Crewther, P.2    Davidson, B.E.3
  • 16
    • 0021717527 scopus 로고
    • Regulation of phenylalanine biosynthesis in Rhodotorula glutinis
    • Fiske M.J., and Kane J.F. Regulation of phenylalanine biosynthesis in Rhodotorula glutinis. Journal of Bacteriology 160 (1984) 676-681
    • (1984) Journal of Bacteriology , vol.160 , pp. 676-681
    • Fiske, M.J.1    Kane, J.F.2
  • 17
    • 1542286225 scopus 로고    scopus 로고
    • Chorismate mutase of Thermus thermophilus is a monofunctional AroH class enzyme inhibited by tyrosine
    • Helmstaedt K., Heinrich G., Merkl R., and Braus G.H. Chorismate mutase of Thermus thermophilus is a monofunctional AroH class enzyme inhibited by tyrosine. Archives of Microbiology 181 (2004) 195-203
    • (2004) Archives of Microbiology , vol.181 , pp. 195-203
    • Helmstaedt, K.1    Heinrich, G.2    Merkl, R.3    Braus, G.H.4
  • 18
    • 0034821747 scopus 로고    scopus 로고
    • Allosteric regulation of catalytic activity: Escherichia coli aspartate transcarbamoylase versus yeast chorismate mutase
    • (table of contents)
    • Helmstaedt K., Krappmann S., and Braus G.H. Allosteric regulation of catalytic activity: Escherichia coli aspartate transcarbamoylase versus yeast chorismate mutase. Microbiology and Molecular Biology Reviews: MMBR 65 (2001) 404-421 (table of contents)
    • (2001) Microbiology and Molecular Biology Reviews: MMBR , vol.65 , pp. 404-421
    • Helmstaedt, K.1    Krappmann, S.2    Braus, G.H.3
  • 19
    • 0017881332 scopus 로고
    • The alpha-helix dipole and the properties of proteins
    • Hol W.G., van Duijnen P.T., and Berendsen H.J. The alpha-helix dipole and the properties of proteins. Nature 273 (1978) 443-446
    • (1978) Nature , vol.273 , pp. 443-446
    • Hol, W.G.1    van Duijnen, P.T.2    Berendsen, H.J.3
  • 20
    • 0028871926 scopus 로고
    • Dali: a network tool for protein structure comparison
    • Holm L., and Sander C. Dali: a network tool for protein structure comparison. Trends in Biochemical Sciences 20 (1995) 478-480
    • (1995) Trends in Biochemical Sciences , vol.20 , pp. 478-480
    • Holm, L.1    Sander, C.2
  • 21
    • 1542313754 scopus 로고    scopus 로고
    • Mutational analysis of feedback inhibition and catalytic sites of prephenate dehydratase from Corynebacterium glutamicum
    • Hsu S.K., Lin L.L., Lo H.H., and Hsu W.H. Mutational analysis of feedback inhibition and catalytic sites of prephenate dehydratase from Corynebacterium glutamicum. Archives of Microbiology 181 (2004) 237-244
    • (2004) Archives of Microbiology , vol.181 , pp. 237-244
    • Hsu, S.K.1    Lin, L.L.2    Lo, H.H.3    Hsu, W.H.4
  • 23
    • 0024274873 scopus 로고
    • An extreme-halophile archaebacterium possesses the interlock type of prephenate dehydratase characteristic of the Gram-positive eubacteria
    • Jensen R.A., d'Amato T.A., and Hochstein L.I. An extreme-halophile archaebacterium possesses the interlock type of prephenate dehydratase characteristic of the Gram-positive eubacteria. Archives of Microbiology 148 (1988) 365-371
    • (1988) Archives of Microbiology , vol.148 , pp. 365-371
    • Jensen, R.A.1    d'Amato, T.A.2    Hochstein, L.I.3
  • 24
    • 0029139836 scopus 로고
    • Recent advances in the physiology and genetics of amino acid-producing bacteria
    • Jetten M.S., and Sinskey A.J. Recent advances in the physiology and genetics of amino acid-producing bacteria. Critical Reviews in Biotechnology 15 (1995) 73-103
    • (1995) Critical Reviews in Biotechnology , vol.15 , pp. 73-103
    • Jetten, M.S.1    Sinskey, A.J.2
  • 26
    • 0033939135 scopus 로고    scopus 로고
    • Controlled intracellular processing of fusion proteins by TEV protease
    • Kapust R.B., and Waugh D.S. Controlled intracellular processing of fusion proteins by TEV protease. Protein Expression and Purification 19 (2000) 312-318
    • (2000) Protein Expression and Purification , vol.19 , pp. 312-318
    • Kapust, R.B.1    Waugh, D.S.2
  • 28
    • 0344443205 scopus 로고    scopus 로고
    • (De)regulation of key enzyme steps in the shikimate pathway and phenylalanine-specific pathway of the actinomycete Amycolatopsis methanolica
    • Kloosterman H., Hessels G.I., Vrijbloed J.W., Euverink G.J., and Dijkhuizen L. (De)regulation of key enzyme steps in the shikimate pathway and phenylalanine-specific pathway of the actinomycete Amycolatopsis methanolica. Microbiology (Reading, England) 149 (2003) 3321-3330
    • (2003) Microbiology (Reading, England) , vol.149 , pp. 3321-3330
    • Kloosterman, H.1    Hessels, G.I.2    Vrijbloed, J.W.3    Euverink, G.J.4    Dijkhuizen, L.5
  • 29
    • 33845609934 scopus 로고    scopus 로고
    • Structures of R- and T-state Escherichia coli aspartokinase III. Mechanisms of the allosteric transition and inhibition by lysine
    • Kotaka M., Ren J., Lockyer M., Hawkins A.R., and Stammers D.K. Structures of R- and T-state Escherichia coli aspartokinase III. Mechanisms of the allosteric transition and inhibition by lysine. The Journal of Biological Chemistry 281 (2006) 31544-31552
    • (2006) The Journal of Biological Chemistry , vol.281 , pp. 31544-31552
    • Kotaka, M.1    Ren, J.2    Lockyer, M.3    Hawkins, A.R.4    Stammers, D.K.5
  • 30
    • 0026244229 scopus 로고
    • MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
    • Kraulis P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. Journal of Applied Crystallography 24 (1991) 946-950
    • (1991) Journal of Applied Crystallography , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 32
    • 0021088623 scopus 로고
    • Mannitol-specific enzyme II of the bacterial phospho transferase system III. The nucleotide sequence of the permease gene
    • Lee C.A., and Saier Jr. M.H. Mannitol-specific enzyme II of the bacterial phospho transferase system III. The nucleotide sequence of the permease gene. Journal of Biological Chemistry 258 (1983) 10761-10767
    • (1983) Journal of Biological Chemistry , vol.258 , pp. 10761-10767
    • Lee, C.A.1    Saier Jr., M.H.2
  • 33
    • 15244344475 scopus 로고    scopus 로고
    • Allosteric mechanisms in ACT domain containing enzymes involved in amino acid metabolism
    • Liberles J.S., Thâorâolfsson M., and Martâinez A. Allosteric mechanisms in ACT domain containing enzymes involved in amino acid metabolism. Amino Acids 28 (2005) 1-12
    • (2005) Amino Acids , vol.28 , pp. 1-12
    • Liberles, J.S.1    Thâorâolfsson, M.2    Martâinez, A.3
  • 35
    • 0003187567 scopus 로고    scopus 로고
    • The atomic structure of protein-protein recognition sites
    • Conte L., Chothia C., and Janin J. The atomic structure of protein-protein recognition sites. Journal of Molecular Biology 285 (1999) 2177-2198
    • (1999) Journal of Molecular Biology , vol.285 , pp. 2177-2198
    • Conte, L.1    Chothia, C.2    Janin, J.3
  • 37
    • 0035943408 scopus 로고    scopus 로고
    • Mechanisms for ligand binding to GluR0 ion channels: crystal structures of the glutamate and serine complexes and a closed apo state
    • Mayer M.L., Olson R., and Gouaux E. Mechanisms for ligand binding to GluR0 ion channels: crystal structures of the glutamate and serine complexes and a closed apo state. Journal of Molecular Biology 311 (2001) 815-836
    • (2001) Journal of Molecular Biology , vol.311 , pp. 815-836
    • Mayer, M.L.1    Olson, R.2    Gouaux, E.3
  • 39
    • 0344406163 scopus 로고    scopus 로고
    • Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend
    • Muraoka S., Okumura R., Ogawa N., Nonaka T., Miyashita K., and Senda T. Crystal structure of a full-length LysR-type transcriptional regulator, CbnR: unusual combination of two subunit forms and molecular bases for causing and changing DNA bend. Journal of Molecular Biology 328 (2003) 555-566
    • (2003) Journal of Molecular Biology , vol.328 , pp. 555-566
    • Muraoka, S.1    Okumura, R.2    Ogawa, N.3    Nonaka, T.4    Miyashita, K.5    Senda, T.6
  • 40
    • 0026319199 scopus 로고
    • Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons
    • Nicholls A., Sharp K.A., and Honig B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11 (1991) 281-296
    • (1991) Proteins , vol.11 , pp. 281-296
    • Nicholls, A.1    Sharp, K.A.2    Honig, B.3
  • 41
    • 0027235488 scopus 로고
    • Three-dimensional structures of the periplasmic lysine/arginine/ornithine-binding protein with and without a ligand
    • Oh B.H., Pandit J., Kang C.H., Nikaido K., Gokcen S., Ames G.F., and Kim S.H. Three-dimensional structures of the periplasmic lysine/arginine/ornithine-binding protein with and without a ligand. The Journal of Biological Chemistry 268 (1993) 11348-11355
    • (1993) The Journal of Biological Chemistry , vol.268 , pp. 11348-11355
    • Oh, B.H.1    Pandit, J.2    Kang, C.H.3    Nikaido, K.4    Gokcen, S.5    Ames, G.F.6    Kim, S.H.7
  • 42
    • 0033592422 scopus 로고    scopus 로고
    • Regulation of phenylalanine biosynthesis Studies on the mechanism of phenylalanine binding and feedback inhibition in the Escherichia coli P-protein
    • Pohnert G., Zhang S., Husain A., Wilson D.B., and Ganem B. Regulation of phenylalanine biosynthesis Studies on the mechanism of phenylalanine binding and feedback inhibition in the Escherichia coli P-protein. Biochemistry 38 (1999) 12212-12217
    • (1999) Biochemistry , vol.38 , pp. 12212-12217
    • Pohnert, G.1    Zhang, S.2    Husain, A.3    Wilson, D.B.4    Ganem, B.5
  • 43
    • 3242793348 scopus 로고    scopus 로고
    • Two biosynthetic pathways for aromatic amino acids in the archaeon Methanococcus maripaludis
    • Porat I., Waters B.W., Teng Q., and Whitman W.B. Two biosynthetic pathways for aromatic amino acids in the archaeon Methanococcus maripaludis. Journal of Bacteriology 186 (2004) 4940-4950
    • (2004) Journal of Bacteriology , vol.186 , pp. 4940-4950
    • Porat, I.1    Waters, B.W.2    Teng, Q.3    Whitman, W.B.4
  • 44
    • 20144367379 scopus 로고    scopus 로고
    • pheA (Rv3838c) of Mycobacterium tuberculosis encodes an allosterically regulated monofunctional prephenate dehydratase that requires both catalytic and regulatory domains for optimum activity
    • Prakash P., Pathak N., and Hasnain S.E. pheA (Rv3838c) of Mycobacterium tuberculosis encodes an allosterically regulated monofunctional prephenate dehydratase that requires both catalytic and regulatory domains for optimum activity. The Journal of Biological Chemistry 280 (2005) 20666-20671
    • (2005) The Journal of Biological Chemistry , vol.280 , pp. 20666-20671
    • Prakash, P.1    Pathak, N.2    Hasnain, S.E.3
  • 45
    • 33745029514 scopus 로고    scopus 로고
    • The 2.15 A crystal structure of Mycobacterium tuberculosis chorismate mutase reveals an unexpected gene duplication and suggests a role in host-pathogen interactions
    • Qamra R., Prakash P., Aruna B., Hasnain S.E., and Mande S.C. The 2.15 A crystal structure of Mycobacterium tuberculosis chorismate mutase reveals an unexpected gene duplication and suggests a role in host-pathogen interactions. Biochemistry 45 (2006) 6997-7005
    • (2006) Biochemistry , vol.45 , pp. 6997-7005
    • Qamra, R.1    Prakash, P.2    Aruna, B.3    Hasnain, S.E.4    Mande, S.C.5
  • 48
    • 0036926615 scopus 로고    scopus 로고
    • A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site
    • Stols L., Gu M., Dieckman L., Raffen R., Collart F.R., and Donnelly M.I. A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site. Protein Expression and Purification 25 (2002) 8-15
    • (2002) Protein Expression and Purification , vol.25 , pp. 8-15
    • Stols, L.1    Gu, M.2    Dieckman, L.3    Raffen, R.4    Collart, F.R.5    Donnelly, M.I.6
  • 50
    • 0031573452 scopus 로고    scopus 로고
    • Mechanisms of catalysis and allosteric regulation of yeast chorismate mutase from crystal structures
    • Strater N., Schnappauf G., Braus G., and Lipscomb W.N. Mechanisms of catalysis and allosteric regulation of yeast chorismate mutase from crystal structures. Structure (London, England: 1993) 5 (1997) 1437-1452
    • (1997) Structure (London, England: 1993) , vol.5 , pp. 1437-1452
    • Strater, N.1    Schnappauf, G.2    Braus, G.3    Lipscomb, W.N.4
  • 51
    • 0347383761 scopus 로고    scopus 로고
    • SOLVE and RESOLVE: automated structure solution and density modification
    • Terwilliger T.C. SOLVE and RESOLVE: automated structure solution and density modification. Methods in Enzymology 374 (2003) 22-37
    • (2003) Methods in Enzymology , vol.374 , pp. 22-37
    • Terwilliger, T.C.1
  • 53
    • 33646921479 scopus 로고    scopus 로고
    • G-protein-coupled receptor 1, G-protein G alpha-subunit 1, and prephenate dehydratase 1 are required for blue light-induced production of phenylalanine in etiolated Arabidopsis
    • Warpeha K.M., Lateef S.S., Lapik Y., Anderson M., Lee B.S., and Kaufman L.S. G-protein-coupled receptor 1, G-protein G alpha-subunit 1, and prephenate dehydratase 1 are required for blue light-induced production of phenylalanine in etiolated Arabidopsis. Plant Physiology 140 (2006) 844-855
    • (2006) Plant Physiology , vol.140 , pp. 844-855
    • Warpeha, K.M.1    Lateef, S.S.2    Lapik, Y.3    Anderson, M.4    Lee, B.S.5    Kaufman, L.S.6
  • 54
    • 2342562489 scopus 로고    scopus 로고
    • Deciphering enzymes genetic selection as a probe of structure and mechanism
    • Woycechowsky K.J., and Hilvert D. Deciphering enzymes genetic selection as a probe of structure and mechanism. European Journal of Biochemistry/FEBS 271 (2004) 1630-1637
    • (2004) European Journal of Biochemistry/FEBS , vol.271 , pp. 1630-1637
    • Woycechowsky, K.J.1    Hilvert, D.2
  • 56
    • 0034712711 scopus 로고    scopus 로고
    • Probing the catalytic mechanism of prephenate dehydratase by site-directed mutagenesis of the Escherichia coli P-protein dehydratase domain
    • Zhang S., Wilson D.B., and Ganem B. Probing the catalytic mechanism of prephenate dehydratase by site-directed mutagenesis of the Escherichia coli P-protein dehydratase domain. Biochemistry 39 (2000) 4722-4728
    • (2000) Biochemistry , vol.39 , pp. 4722-4728
    • Zhang, S.1    Wilson, D.B.2    Ganem, B.3


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