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Volumn 8, Issue 6, 2008, Pages 1138-1148

Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets

Author keywords

Bioinformatics; Central nervous system; Cerebrospinal fluid; HUPO BPP; Protein isoforms

Indexed keywords

BRAIN PROTEIN; ISOPROTEIN; PEPTIDE;

EID: 41549097236     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200700761     Document Type: Article
Times cited : (17)

References (31)
  • 1
    • 33747749803 scopus 로고    scopus 로고
    • Blood-brain barrier genomics and proteomics: Elucidating phenotype, identifying disease targets and enabling brain drug delivery
    • Calabria, A. R., Shusta, E. V., Blood-brain barrier genomics and proteomics: Elucidating phenotype, identifying disease targets and enabling brain drug delivery. Drug Discov. Today 2006, 11, 792-799.
    • (2006) Drug Discov. Today , vol.11 , pp. 792-799
    • Calabria, A.R.1    Shusta, E.V.2
  • 4
    • 33745096825 scopus 로고    scopus 로고
    • Proteomic-based biomarker discovery with emphasis on cerebrospinal fluid and multiple sclerosis
    • Berven, F. S., Flikka, K., Berle, M., Vedeler, C., Ulvik, R. J., Proteomic-based biomarker discovery with emphasis on cerebrospinal fluid and multiple sclerosis. Curr. Pharm. Biotechnol. 2006, 7, 147-158.
    • (2006) Curr. Pharm. Biotechnol , vol.7 , pp. 147-158
    • Berven, F.S.1    Flikka, K.2    Berle, M.3    Vedeler, C.4    Ulvik, R.J.5
  • 5
    • 33746067916 scopus 로고    scopus 로고
    • Proteomics in neurodegeneration-disease driven approaches
    • Schulenborg, T., Schmidt, O., van Hall, A., Meyer, H. E. et al., Proteomics in neurodegeneration-disease driven approaches. J. Neural Transm. 2006, 113, 1055-1073.
    • (2006) J. Neural Transm , vol.113 , pp. 1055-1073
    • Schulenborg, T.1    Schmidt, O.2    van Hall, A.3    Meyer, H.E.4
  • 6
    • 34247101490 scopus 로고    scopus 로고
    • Lovestone, S., Guntert, A., Hye, A., Lynham, S. et al., Proteomics of Alzheimer's disease: Understanding mechanisms and seeking biomarkers. Expert Rev. Proteomics 2007, 4, 227-238.
    • Lovestone, S., Guntert, A., Hye, A., Lynham, S. et al., Proteomics of Alzheimer's disease: Understanding mechanisms and seeking biomarkers. Expert Rev. Proteomics 2007, 4, 227-238.
  • 7
    • 33749248174 scopus 로고    scopus 로고
    • HUPO Brain Proteome Project: Summary of the pilot phase and introduction of a comprehensive data reprocessing strategy
    • Hamacher, M., Apweiler, R., Arnold, G., Becker, A. et al., HUPO Brain Proteome Project: Summary of the pilot phase and introduction of a comprehensive data reprocessing strategy. Proteomics 2006, 6, 4890-4898.
    • (2006) Proteomics , vol.6 , pp. 4890-4898
    • Hamacher, M.1    Apweiler, R.2    Arnold, G.3    Becker, A.4
  • 8
    • 33847151166 scopus 로고    scopus 로고
    • A combined dataset of human cerebrospinal fluid proteins identified by multi-dimensional chromatography and tandem mass spectrometry
    • Pan, S., Zhu, D., Quinn, J. F., Peskind, E. R. et al., A combined dataset of human cerebrospinal fluid proteins identified by multi-dimensional chromatography and tandem mass spectrometry. Proteomics 2007, 7, 469-473.
    • (2007) Proteomics , vol.7 , pp. 469-473
    • Pan, S.1    Zhu, D.2    Quinn, J.F.3    Peskind, E.R.4
  • 9
    • 14344256012 scopus 로고    scopus 로고
    • Romeo, M. J., Espina, V., Lowenthal, M., Espina, B. H. et al., CSF proteome: A protein repository for potential biomarker identification. Expert Rev. Proteomics 2005, 2, 57-70.
    • Romeo, M. J., Espina, V., Lowenthal, M., Espina, B. H. et al., CSF proteome: A protein repository for potential biomarker identification. Expert Rev. Proteomics 2005, 2, 57-70.
  • 10
    • 33847698151 scopus 로고    scopus 로고
    • High-accuracy proteome maps of human body fluids
    • Schmidt, A., Aebersold, R., High-accuracy proteome maps of human body fluids. Genome Biol. 2006, 7, 242.
    • (2006) Genome Biol , vol.7 , pp. 242
    • Schmidt, A.1    Aebersold, R.2
  • 11
    • 33749240944 scopus 로고    scopus 로고
    • Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase
    • Stephan, C., Reidegeld, K. A., Harnacher, M., van Hall, A. et al., Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase. Proteomics 2006, 6, 5015-5029.
    • (2006) Proteomics , vol.6 , pp. 5015-5029
    • Stephan, C.1    Reidegeld, K.A.2    Harnacher, M.3    van Hall, A.4
  • 12
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii, A. I., Keller, A., Kolker, E., Aebersold, R., A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 2003, 75, 4646-4658.
    • (2003) Anal. Chem , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 13
    • 27644555055 scopus 로고    scopus 로고
    • Interpretation of shotgun proteomic data: The protein inference problem
    • Nesvizhskii, A. I., Aebersold, R., Interpretation of shotgun proteomic data: The protein inference problem. Mol. Cell. Proteomics 2005, 4, 1419-1440.
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 1419-1440
    • Nesvizhskii, A.I.1    Aebersold, R.2
  • 15
    • 39049193314 scopus 로고    scopus 로고
    • Misregulation of tau alternative splicing in neurodegeneration and dementia
    • Andreadis, A., Misregulation of tau alternative splicing in neurodegeneration and dementia. Prog. Mol. Subcell. Biol. 2006, 44, 89-107.
    • (2006) Prog. Mol. Subcell. Biol , vol.44 , pp. 89-107
    • Andreadis, A.1
  • 16
    • 33749054403 scopus 로고    scopus 로고
    • Splicing regulation in neurologic disease
    • Licatalosi, D. D., Darnell, R. B., Splicing regulation in neurologic disease. Neuron 2006, 52, 93-101.
    • (2006) Neuron , vol.52 , pp. 93-101
    • Licatalosi, D.D.1    Darnell, R.B.2
  • 17
    • 33846133955 scopus 로고    scopus 로고
    • Computational prediction of proteotypic peptides for quantitative proteomics
    • Mallick, P., Schirle, M., Chen, S. S., Flory, M. R. et al., Computational prediction of proteotypic peptides for quantitative proteomics. Nat. Biotechnol. 2007, 25, 125-131.
    • (2007) Nat. Biotechnol , vol.25 , pp. 125-131
    • Mallick, P.1    Schirle, M.2    Chen, S.S.3    Flory, M.R.4
  • 18
    • 23944526367 scopus 로고    scopus 로고
    • The proteomics identifications database
    • PRIDE
    • Martens, L., Hermjakob, H., Jones, P., Adamski, M. et al., PRIDE: The proteomics identifications database. Proteomics 2005, 5, 3537-3545.
    • (2005) Proteomics , vol.5 , pp. 3537-3545
    • Martens, L.1    Hermjakob, H.2    Jones, P.3    Adamski, M.4
  • 19
    • 33644875983 scopus 로고    scopus 로고
    • A public repository of protein and peptide identifications for the proteomics community
    • PRIDE
    • Jones, P., Cote, R. G., Martens, L., Quinn, A. F. et al., PRIDE: A public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res. 2006, 34, D659-D663.
    • (2006) Nucleic Acids Res , vol.34
    • Jones, P.1    Cote, R.G.2    Martens, L.3    Quinn, A.F.4
  • 20
    • 33749233828 scopus 로고    scopus 로고
    • The power of cooperative investigation: Summary and comparison of the HUPO Brain Proteome Project pilot study results
    • Reidegeld, K. A., Muller, M., Stephan, C., Bluggel, M. et al., The power of cooperative investigation: Summary and comparison of the HUPO Brain Proteome Project pilot study results. Proteomics 2006, 6, 4997-5014.
    • (2006) Proteomics , vol.6 , pp. 4997-5014
    • Reidegeld, K.A.1    Muller, M.2    Stephan, C.3    Bluggel, M.4
  • 21
    • 11144358198 scopus 로고    scopus 로고
    • A gene atlas of the mouse and human protein-encoding transcriptomes
    • Su, A. I., Wiltshire, T., Batalov, S., Lapp, H. et al., A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl. Acad. Sci. USA 2004, 101, 6062-6067.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 6062-6067
    • Su, A.I.1    Wiltshire, T.2    Batalov, S.3    Lapp, H.4
  • 23
    • 3042818018 scopus 로고    scopus 로고
    • An integrated database for proteomics experiments
    • The International Protein Index
    • Kersey, P. J., Duarte, J., Williams, A., Karavidopoulou, Y. et al., The International Protein Index: An integrated database for proteomics experiments. Proteomics 2004, 4, 1985-1988.
    • (2004) Proteomics , vol.4 , pp. 1985-1988
    • Kersey, P.J.1    Duarte, J.2    Williams, A.3    Karavidopoulou, Y.4
  • 24
    • 33749264068 scopus 로고    scopus 로고
    • A comparison of the HUPO Brain Proteome Project pilot with other proteomics studies
    • Martens, L., Muller, M., Stephan, C., Hamacher, M. et al., A comparison of the HUPO Brain Proteome Project pilot with other proteomics studies. Proteomics 2006, 6, 5076-5086.
    • (2006) Proteomics , vol.6 , pp. 5076-5086
    • Martens, L.1    Muller, M.2    Stephan, C.3    Hamacher, M.4
  • 25
    • 34248368920 scopus 로고    scopus 로고
    • The implications of alternative splicing in the ENCODE protein complement
    • Tress, M. L., Martelli, P. L., Frankish, A., Reeves, G. A. et al., The implications of alternative splicing in the ENCODE protein complement. Proc. Natl. Acad. Sci. USA 2007, 104, 5495-5500.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 5495-5500
    • Tress, M.L.1    Martelli, P.L.2    Frankish, A.3    Reeves, G.A.4
  • 26
    • 3042735127 scopus 로고    scopus 로고
    • The need for guidelines in publication of peptide and protein identification data: Working group on publication guidelines for peptide and protein identification data
    • Carr, S., Aebersold, R., Baldwin, M., Burlingame, A. et al., The need for guidelines in publication of peptide and protein identification data: Working group on publication guidelines for peptide and protein identification data. Mol. Cell. Proteomics 2004, 3, 531-533.
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 531-533
    • Carr, S.1    Aebersold, R.2    Baldwin, M.3    Burlingame, A.4
  • 28
    • 33947097486 scopus 로고    scopus 로고
    • Editors, Democratizing proteomics data
    • Editors, Democratizing proteomics data. Nat. Biotechnol. 2007, 25, 262.
    • (2007) Nat. Biotechnol , vol.25 , pp. 262
  • 29
    • 34547176285 scopus 로고    scopus 로고
    • Proteomics data validation: Why all must provide data
    • Martens, L., Hermjakob, H., Proteomics data validation: Why all must provide data. Mol. Biosyst. 2007, 3, 518-522.
    • (2007) Mol. Biosyst , vol.3 , pp. 518-522
    • Martens, L.1    Hermjakob, H.2
  • 30
    • 34249062964 scopus 로고    scopus 로고
    • The minimum information about a proteomics experiment (MIAPE)
    • Taylor, C. F., Paton, N. W., Lilley, K. S., Binz, P. A. et al., The minimum information about a proteomics experiment (MIAPE). Nat. Biotechnol. 2007, 25, 887-893.
    • (2007) Nat. Biotechnol , vol.25 , pp. 887-893
    • Taylor, C.F.1    Paton, N.W.2    Lilley, K.S.3    Binz, P.A.4
  • 31
    • 34547498854 scopus 로고    scopus 로고
    • Editors, Compete, collaborate, compel. Nat. Genet. 2007, 39, 931.
    • Editors, Compete, collaborate, compel. Nat. Genet. 2007, 39, 931.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.