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Volumn 1, Issue 1, 2000, Pages 56-69

Comparison of functional annotation schemes for genomes

Author keywords

Functional genomics; Gene product classification; Ontology; Protein function

Indexed keywords

PROTEIN;

EID: 0034191302     PISSN: 1438793X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s101420000005     Document Type: Article
Times cited : (60)

References (38)
  • 2
    • 0032893084 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
    • Bairoch A, Apweiler R (1999) The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. Nucleic Acids Res 27:49-54
    • (1999) Nucleic Acids Res , vol.27 , pp. 49-54
    • Bairoch, A.1    Apweiler, R.2
  • 5
    • 0032919366 scopus 로고    scopus 로고
    • The Mouse Genome Database (MGD): Genetic and genomic information about the laboratory mouse
    • Blake JA, Richardson JE, Davisson MT, Eppig JT, and the Mouse Genome Database Group (1999) The Mouse Genome Database (MGD): genetic and genomic information about the laboratory mouse. Nucleic Acids Res 27:95-98
    • (1999) Nucleic Acids Res , vol.27 , pp. 95-98
    • Blake, J.A.1    Richardson, J.E.2    Davisson, M.T.3    Eppig, J.T.4
  • 9
    • 0032822429 scopus 로고    scopus 로고
    • Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries
    • Eisenhaber F, Bork P (1999) Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries. Bioinformatics 15:528-535
    • (1999) Bioinformatics , vol.15 , pp. 528-535
    • Eisenhaber, F.1    Bork, P.2
  • 12
    • 0030879154 scopus 로고    scopus 로고
    • PEDANTic genome analysis
    • Frishman D, Mewes HW (1997) PEDANTic genome analysis. Trends Genet 13:415-416
    • (1997) Trends Genet , vol.13 , pp. 415-416
    • Frishman, D.1    Mewes, H.W.2
  • 13
    • 0032561243 scopus 로고    scopus 로고
    • Databases in genomic research
    • Gelbart WM (1998) Databases in genomic research. Science 282:659-661
    • (1998) Science , vol.282 , pp. 659-661
    • Gelbart, W.M.1
  • 15
    • 0032894060 scopus 로고    scopus 로고
    • The Yeast Proteome Database (YPD): A model for the organization and presentation of genome-wide functional data
    • Hodges PE, McKee AH, Davis BP, Payne WE, Garrels JI (1999) The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data. Nucleic Acids Res 27:69-73
    • (1999) Nucleic Acids Res , vol.27 , pp. 69-73
    • Hodges, P.E.1    McKee, A.H.2    Davis, B.P.3    Payne, W.E.4    Garrels, J.I.5
  • 22
    • 0029955765 scopus 로고    scopus 로고
    • The European Bacillus subtilis genome sequencing project: Current status and accessibility of the data from a new World Wide Web site
    • Moszer I, Kunst F, Danchin A (1996) The European Bacillus subtilis genome sequencing project: current status and accessibility of the data from a new World Wide Web site. Microbiology 142:2987-2991
    • (1996) Microbiology , vol.142 , pp. 2987-2991
    • Moszer, I.1    Kunst, F.2    Danchin, A.3
  • 25
    • 0031459311 scopus 로고    scopus 로고
    • Functional genomics: Going forwards from the databases
    • Rastan S, Beeley LJ (1997) Functional genomics: going forwards from the databases. Curr Opin Genet Dev 7:777-783
    • (1997) Curr Opin Genet Dev , vol.7 , pp. 777-783
    • Rastan, S.1    Beeley, L.J.2
  • 26
    • 0027133165 scopus 로고
    • Functions of the gene products of Escherichia coli
    • Riley M (1993) Functions of the gene products of Escherichia coli. Microbiol Rev 57:862-952
    • (1993) Microbiol Rev , vol.57 , pp. 862-952
    • Riley, M.1
  • 27
    • 0031861223 scopus 로고    scopus 로고
    • Genes and proteins of Escherichia coli K-12 (GenProtEC)
    • Riley M (1998a) Genes and proteins of Escherichia coli K-12 (GenProtEC). Nucleic Acids Res 26:54
    • (1998) Nucleic Acids Res , vol.26 , pp. 54
    • Riley, M.1
  • 28
    • 0032102745 scopus 로고    scopus 로고
    • Systems for categorizing functions of gene products
    • Riley M (1998b) Systems for categorizing functions of gene products. Curr Opin Struct Biol 8:388-392
    • (1998) Curr Opin Struct Biol , vol.8 , pp. 388-392
    • Riley, M.1
  • 29
    • 0002374976 scopus 로고    scopus 로고
    • E. coli gene products: Physiological functions and common ancestries
    • Neidhardt FN, Curtiss R III, Lin ECC, Ingraham JL, Low KB, Magasanik B, Reznikoff W, Riley M, Schaechter M, Umbarger E (eds) ASM Press, Washington, DC
    • Riley M, Labedan B (1996) E. coli gene products: physiological functions and common ancestries. In: Neidhardt FN, Curtiss R III, Lin ECC, Ingraham JL, Low KB, Magasanik B, Reznikoff W, Riley M, Schaechter M, Umbarger E (eds) Escherichia coli and Salmonella: cellular and molecular biology, 2nd edn. ASM Press, Washington, DC
    • (1996) Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Edn.
    • Riley, M.1    Labedan, B.2
  • 30
    • 0031733149 scopus 로고    scopus 로고
    • Molecular phylogeny as a basis for the classification of transport proteins from bacteria, archaea and eukarya
    • Saier MH Jr (1998) Molecular phylogeny as a basis for the classification of transport proteins from bacteria, archaea and eukarya. Adv Microb Physiol 40:81-136
    • (1998) Adv Microb Physiol , vol.40 , pp. 81-136
    • Saier Jr., M.H.1
  • 31
    • 0031635565 scopus 로고    scopus 로고
    • Ontologies for molecular biology
    • Schulze-Kremer S (1998) Ontologies for molecular biology. Pac Symp Biocomput 3:695-706
    • (1998) Pac Symp Biocomput , vol.3 , pp. 695-706
    • Schulze-Kremer, S.1
  • 34
    • 0031024670 scopus 로고    scopus 로고
    • Conserved clusters of functionally related genes in two bacterial genomes
    • Tamames J, Casari G, Ouzounis C, Valencia A (1997) Conserved clusters of functionally related genes in two bacterial genomes. J Mol Evol 44:66-73
    • (1997) J Mol Evol , vol.44 , pp. 66-73
    • Tamames, J.1    Casari, G.2    Ouzounis, C.3    Valencia, A.4
  • 35
    • 0031694515 scopus 로고    scopus 로고
    • EUCLID: Automatic classification of proteins in functional classes by their database annotations
    • Tamames J, Ouzounis C, Casari G, Sander C, Valencia A (1998) EUCLID: automatic classification of proteins in functional classes by their database annotations. Bioinformatics 14:542-543
    • (1998) Bioinformatics , vol.14 , pp. 542-543
    • Tamames, J.1    Ouzounis, C.2    Casari, G.3    Sander, C.4    Valencia, A.5
  • 36
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov RL, Koonin EV, Lipman DJ (1997) A genomic perspective on protein families. Science 278:631-637
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 37
    • 0032859140 scopus 로고    scopus 로고
    • Evolution of protein function, from a structural perspective
    • Todd AE, Orengo CA, Thornton JM (1999) Evolution of protein function, from a structural perspective. Curr Opin Chem Biol 3:548-556
    • (1999) Curr Opin Chem Biol , vol.3 , pp. 548-556
    • Todd, A.E.1    Orengo, C.A.2    Thornton, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.