-
1
-
-
0035807809
-
Enzyme-like proteins by computational design
-
D.N. Bolon, and S.L. Mayo Enzyme-like proteins by computational design Proc. Natl Acad. Sci. USA 98 2001 14274 14279
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 14274-14279
-
-
Bolon1
Mayo, S.L.D.N.2
-
2
-
-
0036810246
-
Design, activity, and structure of a highly specific artificial endonuclease
-
B.S. Chevalier, T. Kortemme, M.S. Chadsey, D. Baker, R.J. Monnat, and B.L. Stoddard Design, activity, and structure of a highly specific artificial endonuclease Mol. Cell 10 2002 895 905
-
(2002)
Mol. Cell
, vol.10
, pp. 895-905
-
-
Chevalier, B.S.1
Kortemme, T.2
Chadsey, M.S.3
Baker, D.4
Monnat5
Stoddard, B.L.R.J.6
-
3
-
-
0035979773
-
Design of bioelectronic interfaces by exploiting hinge-bending motions in proteins
-
D.E. Benson, D.W. Conrad, R.M. de Lorimier, S.A. Trammell, and H.W. Hellinga Design of bioelectronic interfaces by exploiting hinge-bending motions in proteins Science 293 2001 1641 1644
-
(2001)
Science
, vol.293
, pp. 1641-1644
-
-
Benson, D.E.1
Conrad, D.W.2
De Lorimier, R.M.3
Trammell4
Hellinga, H.W.S.A.5
-
4
-
-
0036300662
-
Accurate computer-based design of a new backbone conformation in the second turn of protein L
-
B. Kuhlman, J.W. O'Neill, D.E. Kim, K.Y. Zhang, and D. Baker Accurate computer-based design of a new backbone conformation in the second turn of protein L J. Mol. Biol. 315 2002 471 477
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 471-477
-
-
Kuhlman, B.1
O'Neill, J.W.2
Kim, D.E.3
Zhang4
Baker, D.K.Y.5
-
5
-
-
0033516509
-
Side-chain and backbone flexibility in protein core design
-
J.R. Desjarlais, and T.M. Handel Side-chain and backbone flexibility in protein core design J. Mol. Biol. 290 1999 305 318
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 305-318
-
-
Desjarlais1
Handel, T.M.J.R.2
-
6
-
-
0032835617
-
De novo design and structural characterization of proteins and metalloproteins
-
W.F. DeGrado, C.M. Summa, V. Pavone, F. Nastri, and A. Lombardi De novo design and structural characterization of proteins and metalloproteins Annu. Rev. Biochem. 68 1999 779 819
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 779-819
-
-
Degrado, W.F.1
Summa, C.M.2
Pavone, V.3
Nastri4
Lombardi, A.F.5
-
7
-
-
0032982867
-
Rational design of a GCN4-derived mimetic of interleukin-4
-
H. Domingues, D. Cregut, W. Sebald, H. Oschkinat, and L. Serrano Rational design of a GCN4-derived mimetic of interleukin-4 Nature Struct. Biol. 6 1999 652 656
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 652-656
-
-
Domingues, H.1
Cregut, D.2
Sebald, W.3
Oschkinat4
Serrano, L.H.5
-
8
-
-
0032546610
-
Construction of a novel redox protein by rational design: Conversion of a disulfide bridge into a mononuclear iron-sulfur center
-
D.E. Benson, M.S. Wisz, W. Liu, and H.W. Hellinga Construction of a novel redox protein by rational design: conversion of a disulfide bridge into a mononuclear iron-sulfur center Biochemistry 37 1998 7070 7076
-
(1998)
Biochemistry
, vol.37
, pp. 7070-7076
-
-
Benson, D.E.1
Wisz, M.S.2
Liu3
Hellinga, H.W.W.4
-
9
-
-
0031779918
-
Design, structure and stability of a hyperthermophilic protein variant
-
S.M. Malakauskas, and S.L. Mayo Design, structure and stability of a hyperthermophilic protein variant Nature Struct. Biol. 5 1998 470 475
-
(1998)
Nature Struct. Biol.
, vol.5
, pp. 470-475
-
-
Malakauskas1
Mayo, S.L.S.M.2
-
10
-
-
2642670311
-
Design of a 20-amino acid, three-stranded beta-sheet protein
-
T. Kortemme, M. Ramirez-Alvarado, and L. Serrano Design of a 20-amino acid, three-stranded beta-sheet protein Science 281 1998 253 256
-
(1998)
Science
, vol.281
, pp. 253-256
-
-
Kortemme, T.1
Ramirez-Alvarado2
Serrano, L.M.3
-
11
-
-
0142140800
-
Prediction of protein side-chain conformations: A study on the influence of backbone accuracy on conformation stability in the rotamer space
-
P. Tuffery, C. Etchebest, and S. Hazout Prediction of protein side-chain conformations: a study on the influence of backbone accuracy on conformation stability in the rotamer space Protein Eng. 10 1997 361 372
-
(1997)
Protein Eng.
, vol.10
, pp. 361-372
-
-
Tuffery, P.1
Etchebest2
Hazout, S.C.3
-
12
-
-
0030793767
-
De novo protein design: Fully automated sequence selection
-
B.I. Dahiyat, and S.L. Mayo De novo protein design: fully automated sequence selection Science 278 1997 82 87
-
(1997)
Science
, vol.278
, pp. 82-87
-
-
Dahiyat1
Mayo, S.L.B.I.2
-
13
-
-
0031558762
-
De novo protein design: Towards fully automated sequence selection
-
B.I. Dahiyat, C.A. Sarisky, and S.L. Mayo De novo protein design: towards fully automated sequence selection J. Mol. Biol. 273 1997 789 796
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 789-796
-
-
Dahiyat, B.I.1
Sarisky2
Mayo, S.L.C.A.3
-
14
-
-
0030992890
-
De novo design of the hydrophobic core of ubiquitin
-
G.A. Lazar, J.R. Desjarlais, and T.M. Handel De novo design of the hydrophobic core of ubiquitin Protein Sci. 6 1997 1167 1178
-
(1997)
Protein Sci.
, vol.6
, pp. 1167-1178
-
-
Lazar, G.A.1
Desjarlais2
Handel, T.M.J.R.3
-
15
-
-
0028858499
-
De novo design of the hydrophobic cores of proteins
-
J.R. Desjarlais, and T.M. Handel De novo design of the hydrophobic cores of proteins Protein Sci. 4 1995 2006 2018
-
(1995)
Protein Sci.
, vol.4
, pp. 2006-2018
-
-
Desjarlais1
Handel, T.M.J.R.2
-
16
-
-
0028343413
-
Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy
-
P. Koehl, and M. Delarue Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy J. Mol. Biol. 239 1994 249 275
-
(1994)
J. Mol. Biol.
, vol.239
, pp. 249-275
-
-
Koehl1
Delarue, M.P.2
-
17
-
-
0028237287
-
Optimal sequence selection in proteins of known structure by simulated evolution
-
H.W. Hellinga, and F.M. Richards Optimal sequence selection in proteins of known structure by simulated evolution Proc. Natl Acad. Sci. USA 91 1994 5803 5807
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 5803-5807
-
-
Hellinga1
Richards, F.M.H.W.2
-
18
-
-
0034612192
-
Retrostructural analysis of metalloproteins: Application to the design of a minimal model for diiron proteins
-
A. Lombardi, C.M. Summa, S. Geremia, L. Randaccio, V. Pavone, and W.F. DeGrado Retrostructural analysis of metalloproteins: application to the design of a minimal model for diiron proteins Proc. Natl Acad. Sci. USA 97 2000 6298 6305
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 6298-6305
-
-
Lombardi, A.1
Summa, C.M.2
Geremia, S.3
Randaccio, L.4
Pavone5
Degrado, W.F.V.6
-
19
-
-
0036385840
-
Computational de novo design and characterization of an A(2)B(2) diiron protein
-
C.M. Summa, M.M. Rosenblatt, J.K. Hong, J.D. Lear, and W.F. DeGrado Computational de novo design and characterization of an A(2)B(2) diiron protein J. Mol. Biol. 321 2002 923 938
-
(2002)
J. Mol. Biol.
, vol.321
, pp. 923-938
-
-
Summa, C.M.1
Rosenblatt, M.M.2
Hong, J.K.3
Lear4
Degrado, W.F.J.D.5
-
20
-
-
0344751050
-
Sliding helix and change of coordination geometry in a model di-MnII protein
-
W.F. DeGrado, L. Di Costanzo, S. Geremia, A. Lombardi, V. Pavone, and L. Randaccio Sliding helix and change of coordination geometry in a model di-MnII protein Angew. Chem. Int. Ed. Engl. 42 2003 417 420
-
(2003)
Angew. Chem. Int. Ed. Engl.
, vol.42
, pp. 417-420
-
-
Degrado, W.F.1
Di Costanzo, L.2
Geremia, S.3
Lombardi, A.4
Pavone5
Randaccio, L.V.6
-
21
-
-
0345306764
-
Design of a novel globular protein fold with atomic-level accuracy
-
B. Kuhlman, G. Dantas, G.C. Ireton, G. Varani, B.L. Stoddard, and D. Baker Design of a novel globular protein fold with atomic-level accuracy Science 302 2003 1364 1368
-
(2003)
Science
, vol.302
, pp. 1364-1368
-
-
Kuhlman, B.1
Dantas, G.2
Ireton, G.C.3
Varani, G.4
Stoddard5
Baker, D.B.L.6
-
22
-
-
0029091449
-
Repacking protein cores with backbone freedom: Structure prediction for coiled coils
-
P.B. Harbury, B. Tidor, and P.S. Kim Repacking protein cores with backbone freedom: structure prediction for coiled coils Proc. Natl Acad. Sci. USA 92 1995 8408 8412
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 8408-8412
-
-
Harbury, P.B.1
Tidor2
Kim, P.S.B.3
-
23
-
-
0032553587
-
High-resolution protein design with backbone freedom
-
P.B. Harbury, J.J. Plecs, B. Tidor, T. Alber, and P.S. Kim High-resolution protein design with backbone freedom Science 282 1998 1462 1467
-
(1998)
Science
, vol.282
, pp. 1462-1467
-
-
Harbury, P.B.1
Plecs, J.J.2
Tidor, B.3
Alber4
Kim, P.S.T.5
-
24
-
-
0000747247
-
The Fourier transform of a coiled-coil
-
F. Crick The Fourier transform of a coiled-coil Acta Crystallog. 6 1953 685 689
-
(1953)
Acta Crystallog.
, vol.6
, pp. 685-689
-
-
Crick, F.1
-
25
-
-
0017620768
-
Vitamin K-dependent formation of gamma-carboxyglutamic acid
-
J. Stenflo, and J.W. Suttie Vitamin K-dependent formation of gamma-carboxyglutamic acid Annu. Rev. Biochem. 46 1977 157 172
-
(1977)
Annu. Rev. Biochem.
, vol.46
, pp. 157-172
-
-
Stenflo1
Suttie, J.W.J.2
-
26
-
-
0028181062
-
Differences in the metal ion structure between Sr- and Ca-prothrombin fragment 1
-
T.P. Seshadri, E. Skrzypczak-Jankun, M. Yin, and A. Tulinsky Differences in the metal ion structure between Sr- and Ca-prothrombin fragment 1 Biochemistry 33 1994 1087 1092
-
(1994)
Biochemistry
, vol.33
, pp. 1087-1092
-
-
Seshadri, T.P.1
Skrzypczak-Jankun, E.2
Yin3
Tulinsky, A.M.4
-
27
-
-
0027934571
-
Crystal structure of an isoleucine-zipper trimer
-
P.B. Harbury, P.S. Kim, and T. Alber Crystal structure of an isoleucine-zipper trimer Nature 371 1994 80 83
-
(1994)
Nature
, vol.371
, pp. 80-83
-
-
Harbury, P.B.1
Kim2
Alber, T.P.S.3
-
28
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
M.L. Connolly Solvent-accessible surfaces of proteins and nucleic acids Science 221 1983 709 713
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.L.1
-
29
-
-
0026571898
-
Mechanism of specificity in the Fos-Jun oncoprotein heterodimer
-
E.K. O'Shea, R. Rutkowski, and P.S. Kim Mechanism of specificity in the Fos-Jun oncoprotein heterodimer Cell 68 1992 699 708
-
(1992)
Cell
, vol.68
, pp. 699-708
-
-
O'Shea, E.K.1
Rutkowski2
Kim, P.S.R.3
-
30
-
-
0027949381
-
The net energetic contribution of interhelical electrostatic attractions to coiled-coil stability
-
N.E. Zhou, C.M. Kay, and R.S. Hodges The net energetic contribution of interhelical electrostatic attractions to coiled-coil stability Protein Eng. 7 1994 1365 1372
-
(1994)
Protein Eng.
, vol.7
, pp. 1365-1372
-
-
Zhou, N.E.1
Kay2
Hodges, R.S.C.M.3
-
31
-
-
0027176792
-
Dimerization specificity of the leucine zipper-containing bZIP motif on DNA binding: Prediction and rational design
-
C.R. Vinson, T. Hai, and S.M. Boyd Dimerization specificity of the leucine zipper-containing bZIP motif on DNA binding: prediction and rational design Genes Dev. 7 1993 1047 1058
-
(1993)
Genes Dev.
, vol.7
, pp. 1047-1058
-
-
Vinson, C.R.1
Hai2
Boyd, S.M.T.3
-
32
-
-
0029030233
-
Measurement of interhelical electrostatic interactions in the GCN4 leucine zipper
-
K.J. Lumb, and P.S. Kim Measurement of interhelical electrostatic interactions in the GCN4 leucine zipper Science 268 1995 436 439
-
(1995)
Science
, vol.268
, pp. 436-439
-
-
Lumb1
Kim, P.S.K.J.2
-
33
-
-
0027756896
-
A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants
-
P.B. Harbury, T. Zhang, P.S. Kim, and T. Alber A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants Science 262 1993 1401 1407
-
(1993)
Science
, vol.262
, pp. 1401-1407
-
-
Harbury, P.B.1
Zhang, T.2
Kim3
Alber, T.P.S.4
-
34
-
-
0027119143
-
Internal stark effect measurement of the electric field at the amino terminus of an alpha helix
-
D.J. Lockhart, and P.S. Kim Internal stark effect measurement of the electric field at the amino terminus of an alpha helix Science 257 1992 947 951
-
(1992)
Science
, vol.257
, pp. 947-951
-
-
Lockhart1
Kim, P.S.D.J.2
-
36
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project Number 4
-
Collaborative Computational Project Number 4 The CCP4 suite: programs for protein crystallography Acta Crystallog. sect. D 50 1994 760 763
-
(1994)
Acta Crystallog. Sect. D
, vol.50
, pp. 760-763
-
-
-
37
-
-
1242274650
-
Automated protein structure determination with Elves
-
J.M. Holton, and T. Alber Automated protein structure determination with Elves Proc. Natl Acad. Sci. USA 101 2004 1539 1542
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 1539-1542
-
-
Holton1
Alber, T.J.M.2
-
38
-
-
84889120137
-
Kjeldgaard improved methods for building protein models in electron density maps and the location of errors in these models
-
T.A. Jones, J.Y. Zou, and S.W. Cowan Kjeldgaard improved methods for building protein models in electron density maps and the location of errors in these models Acta Crystallog. sect. A 47 1991 110 119
-
(1991)
Acta Crystallog. Sect. a
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou2
Cowan, S.W.J.Y.3
-
39
-
-
0023140814
-
Crystallographic R factor refinement by simulated annealing
-
A.T. Brunger, J. Kuriyan, and M. Karplus Crystallographic R factor refinement by simulated annealing Science 235 1987 458 460
-
(1987)
Science
, vol.235
, pp. 458-460
-
-
Brunger, A.T.1
Kuriyan2
Karplus, M.J.3
-
40
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
A.T. Brunger, P.D. Adams, G.M. Clore, W.L. DeLano, P. Gros, and R.W. Grosse-Kunstleve Crystallography & NMR system: a new software suite for macromolecular structure determination Acta Crystallog. sect. D 54 1998 905 921
-
(1998)
Acta Crystallog. Sect. D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros5
Grosse-Kunstleve, R.W.P.6
|