Physiogenomic comparison of human fat loss in response to diets restrictive of carbohydrate or fat

Nutrition and Metabolism

Volumn 5, Issue 1, 2008, Pages

  Seip, Richard L ^a,b   Volek, Jeff S ^c   Windemuth, Andreas ^a   Kocherla, Mohan ^a   Fernandez, Maria Luz ^c   Kraemer, William J ^c   Ruão, Gualberto ^a  

^a Genomas Inc   (United States)

^b HARTFORD HOSPITAL   (United States)

^c UNIVERSITY OF CONNECTICUT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

6 PHOSPHOFRUCTOKINASE; ANGIOTENSIN 2 RECEPTOR; CARBOHYDRATE; FAT; HISTAMINE METHYLTRANSFERASE; RETINOIC ACID RECEPTOR BETA;

ADULT; AGED; ARTICLE; BODY FAT; COMPARATIVE STUDY; CONTROLLED STUDY; DUAL ENERGY X RAY ABSORPTIOMETRY; FEMALE; GENE EXPRESSION REGULATION; HUMAN; HUMAN EXPERIMENT; LOW CARBOHYDRATE DIET; LOW FAT DIET; MALE; MULTIPLE LINEAR REGRESSION ANALYSIS; NORMAL HUMAN; SINGLE NUCLEOTIDE POLYMORPHISM; WEIGHT REDUCTION;

EID: 41149147605     PISSN: None     EISSN: 17437075     Source Type: Journal    
DOI: 10.1186/1743-7075-5-4     Document Type: Article

References (75)

1. Comparison of energy-restricted very low-carbohydrate and low-fat diets on weight loss and body composition in overweight men and women. J Volek M Sharman A Gomez D Judelson M Rubin G Watson B Sokmen R Silvestre D French W Kraemer, Nutr Metab (Lond) 2004 1 13 15533250 10.1186/1743-7075-1-13
2. Separate effects of reduced carbohydrate intake and weight loss on atherogenic dyslipidemia. RM Krauss PJ Blanche RS Rawlings HS Fernstrom PT Williams, Am J Clin Nutr 2006 83 1025 1031 16685042
3. Comparison of the Atkins, Zone, Ornish, and LEARN diets for change in weight and related risk factors among overweight premenopausal women: the A TO Z Weight Loss Study: a randomized trial. CD Gardner A Kiazand S Alhassan S Kim RS Stafford RR Balise HC Kraemer AC King, JAMA 2007 297 969 977 10.1001/jama.297.9.969 17341711
4. A randomized trial of a low-carbohydrate diet for obesity. GD Foster HR Wyatt JO Hill BG McGuckin C Brill BS Mohammed PO Szapary DJ Rader JS Edman S Klein, N Engl J Med 2003 348 2082 2090 10.1056/NEJMoa022207 12761365
5. Physiogenomic analysis of weight loss induced by dietary carbohydrate restriction. G Ruão A Windemuth M Kocherla T Holford ML Fernandez CE Forsythe RJ Wood WJ Kraemer JS Volek, Nutr Metab (Lond) 2006 3 20 16700901 10.1186/1743-7075-3-20
6. Effects of variation in protein and carbohydrate intake on body mass and composition during energy restriction: a meta-regression 1. JW Krieger HS Sitren MJ Daniels B Langkamp-Henken, Am J Clin Nutr 2006 83 260 274 http:// 16469983
7. Effects of dietary carbohydrate restriction with high protein intake on protein metabolism and the somatotropic axis. MP Harber S Schenk AL Barkan JF Horowitz, J Clin Endocrinol Metab 2005 90 5175 5181 10.1210/jc.2005-0559 15972575
8. A High Fat, Ketogenic Diet, Induces a Unique Metabolic State in Mice. AR Kennedy P Pissios HH Otu B Xue K Asakura N Furukawa FE Marino FF Liu BB Kahn TA Libermann E Maratos-Flier, Am J Physiol Endocrinol Metab 2007 292 E1724 E1739 10.1152/ajpendo.00717.2006 17299079
9. Dietary carbohydrate modification induces alterations in gene expression in abdominal subcutaneous adipose tissue in persons with the metabolic syndrome: the FUNGENUT Study. P Kallio M Kolehmainen DE Laaksonen J Kekalainen T Salopuro K Sivenius L Pulkkinen HM Mykkanen L Niskanen M Uusitupa KS Poutanen, Am J Clin Nutr 2007 85 1417 1427 17490981
10. Carbohydrate balance predicts weight and fat gain in adults. RH Eckel TL Hernandez ML Bell KM Weil TY Shepard GK Grunwald TA Sharp CC Francis JO Hill, Am J Clin Nutr 2006 83 803 808 16600931
11. Low ratio of fat to carbohydrate oxidation as predictor of weight gain: study of 24-h RQ. F Zurlo S Lillioja A Esposito-Del Puente BL Nyomba I Raz MF Saad BA Swinburn WC Knowler C Bogardus E Ravussin, Am J Physiol 1990 259 E650 E657 2240203
12. Nutrient balance and energy expenditure during ad libitum feeding of high-fat and high-carbohydrate diets in humans. CD Thomas JC Peters GW Reed NN Abumrad M Sun JO Hill, Am J Clin Nutr 1992 55 934 942 1570800
13. The human obesity gene map: the 2005 update. T Rankinen A Zuberi YC Chagnon SJ Weisnagel G Argyropoulos B Walts L Perusse C Bouchard, Obesity (Silver Spring) 2006 14 529 644 16741264
14. Does weight loss prognosis depend on genetic make-up? MJ Moreno-Aliaga JL Santos A Marti JA Martinez, Obes Rev 2005 6 155 168 10.1111/j.1467-789X.2005. 00180.x 15836466
15. Genetic Polymorphisms and Weight Loss in Obesity: A Randomised Trial of Hypo-Energetic High- versus Low-Fat Diets. TI Sorensen P Boutin MA Taylor LH Larsen C Verdich L Petersen C Holst SM Echwald C Dina S Toubro M Petersen J Polak K Clement JA Martinez D Langin JM Oppert V Stich I Macdonald P Arner WH Saris O Pedersen A Astrup P Froguel, PLoS Clin Trials 2006 1 e12 16871334 10.1371/journal.pctr.0010012
16. Ruaño G, Windemuth A, Holford TR: Physiogenomics: Integrating Systems Engineering and Nanotechnology for Personalized Medicine. In Tissue Engineering and Artificial Organs Volume 28. 3rd edition. Edited by: Bronzino JD. Boca Raton, CRC: Taylor and Francis; 2006:28-1-28-9.
17. Physiogenomic analysis links serum creatine kinase activities during statin therapy to vascular smooth muscle homeostasis. G Ruão PD Thompson A Windemuth A Smith M Kocherla TR Holford R Seip AH Wu, Pharmacogenomics 2005 6 865 872 10.2217/14622416.6.8.865 16296949
18. Physiogenomic comparison of weight profiles of olanzapine- and risperidone-treated patients. G Ruão JW Goethe C Caley S Woolley TR Holford M Kocherla A Windemuth J Leon, Mol Psychiatry 2007 12 474 482 17199131
19. Physiogenomic Association of Statin-Related Myalgia to Serotonin Receptors. G Ruão PD Thompson A Windemuth RL Seip A Dande A Sarokin M Kocherla A Smith TR Holford AH Wu, Muscle and Nerve 2007 36 329 335 10.1002/mus.20871
20. Dual energy X-ray absorptiometry assessment of fat mass distribution and its association with the insulin resistance syndrome. G Paradisi L Smith C Burtner R Leaming WT Garvey G Hook A Johnson J Cronin HO Steinberg AD Baron, Diabetes Care 1999 22 1310 1317 10.2337/diacare.22.8.1310 10480776
21. Validity and reliability of dual-energy X-ray absorptiometry for the assessment of abdominal adiposity. SG Glickman CS Marn MA Supiano DR Dengel, J Appl Physiol 2004 97 509 514 10.1152/japplphysiol.01234.2003 15075304
22. An isoenergetic very low carbohydrate diet improves serum HDL cholesterol and triacylglycerol concentrations, the total cholesterol to HDL cholesterol ratio and postprandial pipemic responses compared with a low fat diet in normal weight, normolipidemic women. JS Volek MJ Sharman AL Gomez TP Scheett WJ Kraemer, J Nutr 2003 133 2756 2761 12949361
23. Body composition and hormonal responses to a carbohydrate-restricted diet. JS Volek MJ Sharman DM Love NG Avery AL Gomez TP Scheett WJ Kraemer, Metabolism 2002 51 864 870 10.1053/meta.2002.32037 12077732
24. A ketogenic diet favorably affects serum biomarkers for cardiovascular disease in normal-weight men. MJ Sharman WJ Kraemer DM Love NG Avery AL Gomez TP Scheett JS Volek, J Nutr 2002 132 1879 1885 12097663
25. Carbohydrate restriction alters lipoprotein metabolism by modifying VLDL, LDL, and HDL subfraction distribution and size in overweight men. RJ Wood JS Volek Y Liu NS Shachter JH Contois ML Fernandez, J Nutr 2006 136 384 389 16424116
26. Overconsumption of dietary fat and alcohol: Mechanisms involving lipids and hypothalamic peptides. SF Leibowitz, Physiol Behav 2007 513 521 17481672 10.1016/j.physbeh.2007.03.018
27. Ghrelin-induced food intake and growth hormone secretion are altered in melanocortin 3 and 4 receptor knockout mice. AM Shaw BG Irani MC Moore C Haskell-Luevano WJ Millard, Peptides 2005 26 1720 1727 10.1016/j.peptides.2004. 12.026 16005545
28. HNMT, histamine N-methyl transferase, function. 2007 http://www.ncbi.nlm. nih.gov/entrez/dispomim.cgi?id=605238
29. LIPF, Gastic Lipase, function. 2007 http://www.ncbi.nlm.nih.gov/entrez/ dispomim.cgi?id=601980
30. Human distribution and release of a putative new gut hormone, peptide YY. TE Adrian GL Ferri AJ Bacarese-Hamilton HS Fuessl JM Polak SR Bloom, Gastroenterology 1985 89 1070 1077 3840109
31. Molecular characterization of the ligand-receptor interaction of neuropeptide Y. N Ingenhoven AG Beck-Sickinger, Curr Med Chem 1999 6 1055 1066 10519913
32. Treating obesity: does antagonism of NPY fit the bill? S Farooqi, Cell Metab 2006 4 260 262 10.1016/j.cmet.2006.09.006 17011498
33. Effect of NPY5R antagonist MK-0557 on weight regain after very-low-calorie diet-induced weight loss. N Erondu T Wadden I Gantz B Musser AM Nguyen H Bays G Bray PM O'Neil A Basdevant KD Kaufman SB Heymsfield JM Amatruda, Obesity (Silver Spring) 2007 15 895 905 17426325
34. Genetic dissection of neuronal pathways controlling energy homeostasis. N Balthasar, Obesity (Silver Spring) 2006 14 Suppl 5 222S 227S 17021371
35. The melanocortin system and energy balance. AA Butler, Peptides 2006 27 281 290 10.1016/j.peptides.2005.02.029 16434123
36. Apolipoprotein A-IV, food intake, and obesity. P Tso M Liu, Physiol Behav 2004 83 631 643 10.1016/j.physbeh.2004.07.032 15621069
37. JG Salway, Metabolism at a glance Oxford, Blackwell Science, Ltd. 2nd 1999
38. PFKL, phosphofructokinase, liver, function. 2007 http://www.ncbi.nlm.nih. gov/entrez/dispomim.cgi?id=171860
39. PFKM, phosphofructokinase, muscle, function. 2007 http://www.ncbi.nlm. nih.gov/entrez/dispomim.cgi?id=610681
40. What can we learn from seasonal animals about the regulation of energy balance? PJ Morgan AW Ross JG Mercer P Barrett, Prog Brain Res 2006 153 325 337 16876584
41. Exposure to an obesity-inducing diet early affects the pattern of expression of peroxisome proliferator, retinoic acid, and triiodothyronine nuclear receptors in the rat. A Redonnet R Groubet C Noel-Suberville S Bonilla A Martinez P Higueret, Metabolism 2001 50 1161 1167 10.1053/meta.2001.26759 11586487
42. Dietary soy protein isolate modifies hepatic retinoic acid receptor-beta proteins and inhibits their DNA binding activity in rats. CW Xiao J Mei W Huang C Wood MR L'abbe GS Gilani GM Cooke IH Curran, J Nutr 2007 137 1 6 17182792
43. The role of angiotensin II and its receptors in regulation of adipose tissue metabolism and cellularity. S Zorad M Fickova B Zelezna L Macho JG Kral, Gen Physiol Biophys 1995 14 383 391 8786038
44. Relationships of plasma adiponectin level and adiponectin receptors 1 and 2 gene expression to insulin sensitivity and glucose and fat metabolism in monozygotic and dizygotic twins. H Storgaard P Poulsen C Ling L Groop AA Vaag, J Clin Endocrinol Metab 2007 92 2835 2839 10.1210/jc.2006-1812 17426101
45. Nutritional regulation of adipose tissue apolipoprotein E expression. ZH Huang RM Luque RD Kineman T Mazzone, Am J Physiol Endocrinol Metab 2007 293 E203 E209 10.1152/ajpendo.00118.2007 17389709
46. Mammalian adipose tissue and muscle are major sources of lipid transfer protein mRNA. XC Jiang P Moulin E Quinet IJ Goldberg LK Yacoub LB Agellon D Compton R Schnitzer-Polokoff AR Tall, J Biol Chem 1991 266 4631 4639 1999438
47. Cloning and sequencing of human cholesteryl ester transfer protein cDNA. D Drayna AS Jarnagin J McLean W Henzel W Kohr C Fielding R Lawn, Nature 1987 327 632 634 10.1038/327632a0 3600759
48. Sterol upregulation of human CETP expression in vitro and in transgenic mice by an LXR element. Y Luo AR Tall, J Clin Invest 2000 105 513 520 10683381 10.1172/JCI8573
49. Insulin resistance and obesity: resistin, a hormone secreted by adipose tissue. G Wolf, Nutr Rev 2004 62 389 394 10.1301/nr.2004.oct.389-394 15508908
50. Highly parallel SNP genotyping. JB Fan A Oliphant R Shen BG Kermani F Garcia KL Gunderson M Hansen F Steemers SL Butler P Deloukas L Galver S Hunt C McBride M Bibikova T Rubano J Chen E Wickham D Doucet W Chang D Campbell B Zhang S Kruglyak D Bentley J Haas P Rigault L Zhou J Stuelpnagel MS Chee, Cold Spring Harb Symp Quant Biol 2003 68 69 78 10.1101/sqb.2003.68.69 15338605
51. BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping. A Oliphant DL Barker JR Stuelpnagel MS Chee, Biotechniques 2002 Suppl 56 61 12083399
52. P Dalgaard, Introductory Statistics with R New York, Springer Science + Business Media 2002
53. JJ Faraway, Linear Models with R Boca Raton, FL, Chapman & Hall/CRC 2004
54. J Maindonald J Braun, Data Analysis and Graphics Using R: An Example-based Approach Cambridge, Cambridge University Press 2nd 2007
55. Identifying differentially expressed genes using false discovery rate controlling procedures. A Reiner D Yekutieli Y Benjamini, Bioinformatics 2003 19 368 375 10.1093/bioinformatics/btf877 12584122
56. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Y Benjamini Y Hochberg, Journal of the Royal Statistical Society, Series B 1995 57 289 300
57. On the adaptive control of the false discovery rate in multiple testing with independent statistics. Y Benjamini Y Hochberg, Journal of Educational and Behavioral Statistics 2000 25 60 83
58. Locally weighted regression: an approach to regression analysis by local fitting. WS Cleveland SJ Devlin, Journal of the Amercian Statistical Association 2007 83 596 610 10.2307/2289282
59. Robust locally weighted regression and smoothing scatterplots. WS Cleveland, Journal of the Amercian Statistical Association 2007 74 829 836 10.2307/2286407
60. Serum retinol binding protein 4 contributes to insulin resistance in obesity and type 2 diabetes. Q Yang TE Graham N Mody F Preitner OD Peroni JM Zabolotny K Kotani L Quadro BB Kahn, Nature 2005 436 356 362 10.1038/nature03711 16034410
61. The functional genomics of noncoding RNA. JS Mattick, Science 2005 309 1527 1528 10.1126/science.1117806 16141063
62. V Laudet H Gronemeyer, The nuclear receptor facts book San Diego, Academic Press 2002
63. Retinoids and Hox genes. H Marshall A Morrison M Studer H Popperl R Krumlauf, FASEB J 1996 10 969 978 8801179
64. Cytochrome P450RAI(CYP26) promoter: a distinct composite retinoic acid response element underlies the complex regulation of retinoic acid metabolism. O Loudig C Babichuk J White S Abu-Abed C Mueller M Petkovich, Mol Endocrinol 2000 14 1483 1497 10.1210/me.14.9.1483 10976925
65. Retinoid regulation of the phosphoenolpyruvate carboxykinase gene in liver. DJ Shin DP Odom KB Scribner S Ghoshal MM McGrane, Mol Cell Endocrinol 2002 195 39 54 10.1016/S0303-7207(02)00215-0 12354671
66. Vitamin A regulates genes involved in hepatic gluconeogenesis in mice: phosphoenolpyruvate carboxykinase, fructose-1,6-bisphosphatase and 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase. DJ Shin MM McGrane, J Nutr 1997 127 1274 1278 9202079
67. Metoprine, an inhibitor of histamine N-methyltransferase but not catechol-O-methyltransferase, suppresses feeding in sated and in food deprived rats. A Lecklin L Tuomisto E MacDonald, Methods Find Exp Clin Pharmacol 1995 17 47 52 7542717
68. Time course of enzyme changes after a switch from a high-fat to a low-fat diet. SP Brooks BJ Lampi, Comp Biochem Physiol B Biochem Mol Biol 1997 118 359 365 10.1016/S0305-0491(97)00163-6 9440229
69. A follow-up linkage study supports evidence for a bipolar affective disorder locus on chromosome 21q22. J Liu SH Juo JD Terwilliger A Grunn X Tong M Brito JE Loth K Kanyas B Lerer J Endicott G Penchaszadeh TC Gilliam M Baron, Am J Med Genet 2001 105 189 194 10.1002/ajmg.1195 11304836
70. Co-expression of renin-angiotensin system genes in human adipose tissue. S Engeli K Gorzelniak R Kreutz N Runkel A Distler AM Sharma, J Hypertens 1999 17 555 560 10.1097/00004872-199917040-00014 10404958
71. Deletion of the angiotensin type 2 receptor (AT2R) reduces adipose cell size and protects from diet-induced obesity and insulin resistance. L Yvan-Charvet P Even M Bloch-Faure M Guerre-Millo N Moustaid-Moussa P Ferre A Quignard-Boulange, Diabetes 2005 54 991 999 10.2337/diabetes.54.4.991 15793237
72. Left ventricular mass in relation to genetic variation in angiotensin II receptors, renin system genes, and sodium excretion. T Kuznetsova JA Staessen L Thijs C Kunath A Olszanecka A Ryabikov V Tikhonoff K Stolarz G Bianchi E Casiglia R Fagard SM Brand-Herrmann K Kawecka-Jaszcz S Malyutina Y Nikitin E Brand, Circulation 2004 110 2644 2650 http:// 10.1161/01.CIR.0000145541.63406.BA 15492316
73. Angiotensin II type 2 receptor gene polymorphisms and cardioprotective role in essential hypertension. M Zhang H Ma BS Wang YZ Zhao, Heart Vessels 2006 21 95 101 10.1007/s00380-005-0865-1 16550310
74. Effect of feeding, fasting, and diabetes on liver glycogen synthase activity, protein, and mRNA in rats. MC Gannon FQ Nuttall, Diabetologia 1997 40 758 763 10.1007/s001250050746 9243095
75. Quo Vadis Personalized Medicine? G Ruão, Personalized Medicine 2004 1 1 7 10.1517/17410541.1.1.1