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Volumn 55, Issue 3, 2008, Pages 489-499

Quantifying expression of a dissimilatory (bi)sulfite reductase gene in petroleum-contaminated marine harbor sediments

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; HYDROGEN SULFITE REDUCTASE; MESSENGER RNA; PETROLEUM; RIBOSOME DNA; RNA 16S;

EID: 41049085212     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-007-9294-2     Document Type: Article
Times cited : (38)

References (40)
  • 2
    • 0034213512 scopus 로고    scopus 로고
    • Anaerobic bioremediation of benzene under sulfate-reducing conditions in a petroleum-contaminated aquifer
    • Anderson RT, Lovley DR (2000) Anaerobic bioremediation of benzene under sulfate-reducing conditions in a petroleum-contaminated aquifer. Environ Sci Technol 34:2261-2266
    • (2000) Environ Sci Technol , vol.34 , pp. 2261-2266
    • Anderson, R.T.1    Lovley, D.R.2
  • 3
    • 0030619505 scopus 로고    scopus 로고
    • Desorption and mineralization kinetics of phenanthrene and chrysene in contaminated soils
    • Carmichael LM, Christman RF, Pfaender FK (1997) Desorption and mineralization kinetics of phenanthrene and chrysene in contaminated soils. Environ Sci Technol 31:126-132
    • (1997) Environ Sci Technol , vol.31 , pp. 126-132
    • Carmichael, L.M.1    Christman, R.F.2    Pfaender, F.K.3
  • 4
    • 0035993524 scopus 로고    scopus 로고
    • Anaerobic biodegradation of polycyclic aromatic hydrocarbon in soil
    • Chang BV, Shiung LC, Yuan SY (2002) Anaerobic biodegradation of polycyclic aromatic hydrocarbon in soil. Chemosphere 48:717-724
    • (2002) Chemosphere , vol.48 , pp. 717-724
    • Chang, B.V.1    Shiung, L.C.2    Yuan, S.Y.3
  • 5
    • 4644257150 scopus 로고    scopus 로고
    • Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens
    • Chin KJ, Esteve-Nunez A, Leang C, Lovley DR (2004) Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens. Appl Environ Microbiol 70:5183-5189
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5183-5189
    • Chin, K.J.1    Esteve-Nunez, A.2    Leang, C.3    Lovley, D.R.4
  • 6
    • 0030044304 scopus 로고    scopus 로고
    • Oxidation of polycyclic aromatic hydrocarbons under sulfate-reducing conditions
    • Coates JD, Anderson RT, Lovley DR (1996) Oxidation of polycyclic aromatic hydrocarbons under sulfate-reducing conditions. Appl Environ Microbiol 62:1099-1101
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1099-1101
    • Coates, J.D.1    Anderson, R.T.2    Lovley, D.R.3
  • 7
    • 0030832084 scopus 로고    scopus 로고
    • Anaerobic degradation of polycyclic aromatic hydrocarbons and alkanes in petroleum-contaminated marine harbor sediments
    • Coates JD, Woodward J, Allen J, Philp, P, Lovley DR (1997) Anaerobic degradation of polycyclic aromatic hydrocarbons and alkanes in petroleum-contaminated marine harbor sediments. Appl Environ Microbiol 63:3589-3593
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3589-3593
    • Coates, J.D.1    Woodward, J.2    Allen, J.3    Philp, P.4    Lovley, D.R.5
  • 10
    • 0024151127 scopus 로고
    • Anaerobic degradation of aromatic compounds
    • Evans WC, Fuchs G (1988) Anaerobic degradation of aromatic compounds. Annu Rev Microbiol 42:289-317
    • (1988) Annu Rev Microbiol , vol.42 , pp. 289-317
    • Evans, W.C.1    Fuchs, G.2
  • 11
    • 0029805854 scopus 로고    scopus 로고
    • Direct ribosome isolation from soil to extract bacterial rRNA for community analysis
    • Felske A, Engelen B, Nubel U, Backhaus H (1996) Direct ribosome isolation from soil to extract bacterial rRNA for community analysis. Appl Environ Microbiol 62:4162-4167
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4162-4167
    • Felske, A.1    Engelen, B.2    Nubel, U.3    Backhaus, H.4
  • 12
    • 0027231336 scopus 로고
    • Quantitative relationship between naphthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites
    • Fleming JT, Sanseverino J, Sayler GS (1993) Quantitative relationship between naphthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites. Environ SciTechnol 27:1068-1074
    • (1993) Environ SciTechnol , vol.27 , pp. 1068-1074
    • Fleming, J.T.1    Sanseverino, J.2    Sayler, G.S.3
  • 13
    • 0033206805 scopus 로고    scopus 로고
    • Anaerobic degradation of naphthalene by a pure culture of a novel type of marine sulphate-reducing bacterium
    • Galushko A, Minz D, Schink B, Widdel F (1999) Anaerobic degradation of naphthalene by a pure culture of a novel type of marine sulphate-reducing bacterium. Environ Microbiol 1:415-420
    • (1999) Environ Microbiol , vol.1 , pp. 415-420
    • Galushko, A.1    Minz, D.2    Schink, B.3    Widdel, F.4
  • 14
    • 0032821317 scopus 로고    scopus 로고
    • Role of prior exposure on anaerobic degradation of naphthalene and phenanthrene in marine harbor sediments
    • Hayes LA, Nevin KP, Lovley DR (1999) Role of prior exposure on anaerobic degradation of naphthalene and phenanthrene in marine harbor sediments. Org Geochem 30:937-945
    • (1999) Org Geochem , vol.30 , pp. 937-945
    • Hayes, L.A.1    Nevin, K.P.2    Lovley, D.R.3
  • 15
    • 0036051361 scopus 로고    scopus 로고
    • Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments
    • Hayes LA, Lovley DR (2002) Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments. Microb Ecol 43:134-145
    • (2002) Microb Ecol , vol.43 , pp. 134-145
    • Hayes, L.A.1    Lovley, D.R.2
  • 16
    • 32044456428 scopus 로고    scopus 로고
    • Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes
    • Holmes DE, Nevin KP, O'Neil RA, Ward JE, Adams LA, Woodward TL, Vrionis HA, Lovley DR (2005) Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes. Appl Environ Microbiol 71:6870-6877
    • (2005) Appl Environ Microbiol , vol.71 , pp. 6870-6877
    • Holmes, D.E.1    Nevin, K.P.2    O'Neil, R.A.3    Ward, J.E.4    Adams, L.A.5    Woodward, T.L.6    Vrionis, H.A.7    Lovley, D.R.8
  • 18
    • 11844297290 scopus 로고    scopus 로고
    • Biodegradation of sediment-bound PAHs in field-contaminated sediment
    • Lei L, Khodadoust AP, Suidan MT, Tabak HH (2005) Biodegradation of sediment-bound PAHs in field-contaminated sediment. Water Res 39:349-361
    • (2005) Water Res , vol.39 , pp. 349-361
    • Lei, L.1    Khodadoust, A.P.2    Suidan, M.T.3    Tabak, H.H.4
  • 19
    • 0842265917 scopus 로고    scopus 로고
    • Molecular quantification of sulfate-reducing microorganisms (carrying dsrAB genes) by competitive PCR in estuarine sediments
    • Leloup J, Quillet L, Oger C, Boust D, Petit F (2004) Molecular quantification of sulfate-reducing microorganisms (carrying dsrAB genes) by competitive PCR in estuarine sediments. FEMS Microbiol Ecol 47:207-214
    • (2004) FEMS Microbiol Ecol , vol.47 , pp. 207-214
    • Leloup, J.1    Quillet, L.2    Oger, C.3    Boust, D.4    Petit, F.5
  • 20
    • 0034437920 scopus 로고    scopus 로고
    • Anaerobic benzene degradation
    • Lovley DR (2000) Anaerobic benzene degradation. Biodegradation 11:107-116
    • (2000) Biodegradation , vol.11 , pp. 107-116
    • Lovley, D.R.1
  • 21
    • 2142763872 scopus 로고    scopus 로고
    • Cleaning up with genomics: Applying molecular biology to bioremediation
    • Lovley DR (2003) Cleaning up with genomics: Applying molecular biology to bioremediation. Nat Rev Microbiol 1:35-44
    • (2003) Nat Rev Microbiol , vol.1 , pp. 35-44
    • Lovley, D.R.1
  • 23
    • 0025363083 scopus 로고
    • Anaerobic oxidation of toluene, phenol, and p-cresol by the dissimilatory iron-reducing organism GS-15
    • Lovley DR, Lonergan DJ (1990) Anaerobic oxidation of toluene, phenol, and p-cresol by the dissimilatory iron-reducing organism GS-15. Appl Environ Microbiol 56:1858-1864
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1858-1864
    • Lovley, D.R.1    Lonergan, D.J.2
  • 24
    • 0028338462 scopus 로고
    • Novel processes for anaerobic sulfate production from elemental sulfur by sulfate-reducing bacteria
    • Lovley DR, Phillips EJP (1994) Novel processes for anaerobic sulfate production from elemental sulfur by sulfate-reducing bacteria. Appl Environ Microbiol 60:2394-2399
    • (1994) Appl Environ Microbiol , vol.60 , pp. 2394-2399
    • Lovley, D.R.1    Phillips, E.J.P.2
  • 25
    • 0343503030 scopus 로고    scopus 로고
    • Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores
    • Ludemann H, Arth I, Liesack W (2000) Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores. Appl Environ Microbiol 66:754-762
    • (2000) Appl Environ Microbiol , vol.66 , pp. 754-762
    • Ludemann, H.1    Arth, I.2    Liesack, W.3
  • 27
    • 0032701629 scopus 로고    scopus 로고
    • Anaerobic degradation of m-cresol by Desulfobacterium cetonicum is initiated by formation of 3-hydroxybenzylsuccinate
    • Muller JA, Galushko AS, Kappler A, Schink B (1999) Anaerobic degradation of m-cresol by Desulfobacterium cetonicum is initiated by formation of 3-hydroxybenzylsuccinate. Arch Microbiol 172:287-294
    • (1999) Arch Microbiol , vol.172 , pp. 287-294
    • Muller, J.A.1    Galushko, A.S.2    Kappler, A.3    Schink, B.4
  • 28
    • 0028116029 scopus 로고
    • MerA gene expression in aquatic environments measured by mRNA production and Hg(II) volatilization
    • Nazaret S, Jeffrey WH, Saouter ER, Von Haven R, Barkay T (1994) merA gene expression in aquatic environments measured by mRNA production and Hg(II) volatilization. Appl Environ Microbiol 60:4059-4065
    • (1994) Appl Environ Microbiol , vol.60 , pp. 4059-4065
    • Nazaret, S.1    Jeffrey, W.H.2    Saouter, E.R.3    Von Haven, R.4    Barkay, T.5
  • 29
    • 12544256650 scopus 로고    scopus 로고
    • Diversity of functional genes of methanogens, methanotrophs and sulfate reducers in deep-sea hydrothermal environments
    • Nercessian O, Bienvenu N, Moreira D, Prieur D, Jeanthon C (2005) Diversity of functional genes of methanogens, methanotrophs and sulfate reducers in deep-sea hydrothermal environments. Environ Microbiol 7:118-132
    • (2005) Environ Microbiol , vol.7 , pp. 118-132
    • Nercessian, O.1    Bienvenu, N.2    Moreira, D.3    Prieur, D.4    Jeanthon, C.5
  • 30
    • 0041696956 scopus 로고    scopus 로고
    • Quantification of dissimilatory (bi)sulphite reductase gene expression in Desulfobacterium autotrophicum using real-time RT-PCR
    • Neretin LN, Schippers A, Pernthaler A, Hamann K, Amann R, Jorgensen BB (2003) Quantification of dissimilatory (bi)sulphite reductase gene expression in Desulfobacterium autotrophicum using real-time RT-PCR. Environ Microbiol 5:660-671
    • (2003) Environ Microbiol , vol.5 , pp. 660-671
    • Neretin, L.N.1    Schippers, A.2    Pernthaler, A.3    Hamann, K.4    Amann, R.5    Jorgensen, B.B.6
  • 31
    • 0021197001 scopus 로고
    • Hydrogenase, electron transfer proteins, and energy coupling in the sulfate-reducing bacteria Desulfovibrio
    • Odom JM, Peck HD, Jr (1984) Hydrogenase, electron transfer proteins, and energy coupling in the sulfate-reducing bacteria Desulfovibrio. Annu Rev Microbiol 38:551-592
    • (1984) Annu Rev Microbiol , vol.38 , pp. 551-592
    • Odom, J.M.1    Peck Jr., H.D.2
  • 32
    • 0000159756 scopus 로고
    • Use of "specific inhibitors" in biogeochemistry and microbial ecology
    • Oremland RS, Capone DG (1988) Use of "specific inhibitors" in biogeochemistry and microbial ecology. Adv Microb Ecol 10:285-383
    • (1988) Adv Microb Ecol , vol.10 , pp. 285-383
    • Oremland, R.S.1    Capone, D.G.2
  • 33
    • 0035072290 scopus 로고    scopus 로고
    • Molecular characterization of sulfate-reducing bacteria in anaerobic hydrocarbon-degrading consortia and pure cultures using the dissimilatory sulfite reductase (dsrAB) genes
    • Perez-Jimenez JR, Young LY, Kerkhof LJ (2001) Molecular characterization of sulfate-reducing bacteria in anaerobic hydrocarbon-degrading consortia and pure cultures using the dissimilatory sulfite reductase (dsrAB) genes. FEMS Microbiol Ecol 35:145-150
    • (2001) FEMS Microbiol Ecol , vol.35 , pp. 145-150
    • Perez-Jimenez, J.R.1    Young, L.Y.2    Kerkhof, L.J.3
  • 34
    • 13544259591 scopus 로고    scopus 로고
    • Phylogeography of sulfate-reducing bacteria among disturbed sediments, disclosed by analysis of the dissimilatory sulfite reductase genes (dsrAB)
    • Perez-Jimenez JR, Kerkhof LJ (2005) Phylogeography of sulfate-reducing bacteria among disturbed sediments, disclosed by analysis of the dissimilatory sulfite reductase genes (dsrAB). Appl Environ Microbiol 71:1004-1011
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1004-1011
    • Perez-Jimenez, J.R.1    Kerkhof, L.J.2
  • 36
    • 0037110508 scopus 로고    scopus 로고
    • Anaerobic, sulfate-dependent degradation of polycyclic aromatic hydrocarbons in petroleum-contaminated harbor sediment
    • Rothermich MM, Hayes LA, Lovley DR (2002) Anaerobic, sulfate-dependent degradation of polycyclic aromatic hydrocarbons in petroleum-contaminated harbor sediment. Environ Sci Technol 36:4811-4817
    • (2002) Environ Sci Technol , vol.36 , pp. 4811-4817
    • Rothermich, M.M.1    Hayes, L.A.2    Lovley, D.R.3
  • 37
    • 0029662670 scopus 로고    scopus 로고
    • Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria
    • Voordouw G, Armstrong SM, Reimer MF, Fouts B, Telang AJ, Shen Y, Gevertz D (1996) Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria. Appl Environ Microbiol 62:1623-1629
    • (1996) Appl Environ Microbiol , vol.62 , pp. 1623-1629
    • Voordouw, G.1    Armstrong, S.M.2    Reimer, M.F.3    Fouts, B.4    Telang, A.J.5    Shen, Y.6    Gevertz, D.7
  • 38
    • 0032463021 scopus 로고    scopus 로고
    • Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration
    • Wagner M, Roger AJ, Flax JL, Brusseau GA, Stahl DA (1998) Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. J Bacteriol 180:2975-2982
    • (1998) J Bacteriol , vol.180 , pp. 2975-2982
    • Wagner, M.1    Roger, A.J.2    Flax, J.L.3    Brusseau, G.A.4    Stahl, D.A.5
  • 40
    • 0035370088 scopus 로고    scopus 로고
    • Anaerobic biodegradation of saturated and aromatic hydrocarbons
    • Widdel F, Rabus R (2001) Anaerobic biodegradation of saturated and aromatic hydrocarbons. Curr Opin Biotechnol 12:259-276
    • (2001) Curr Opin Biotechnol , vol.12 , pp. 259-276
    • Widdel, F.1    Rabus, R.2


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