-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0034213512
-
Anaerobic bioremediation of benzene under sulfate-reducing conditions in a petroleum-contaminated aquifer
-
Anderson RT, Lovley DR (2000) Anaerobic bioremediation of benzene under sulfate-reducing conditions in a petroleum-contaminated aquifer. Environ Sci Technol 34:2261-2266
-
(2000)
Environ Sci Technol
, vol.34
, pp. 2261-2266
-
-
Anderson, R.T.1
Lovley, D.R.2
-
3
-
-
0030619505
-
Desorption and mineralization kinetics of phenanthrene and chrysene in contaminated soils
-
Carmichael LM, Christman RF, Pfaender FK (1997) Desorption and mineralization kinetics of phenanthrene and chrysene in contaminated soils. Environ Sci Technol 31:126-132
-
(1997)
Environ Sci Technol
, vol.31
, pp. 126-132
-
-
Carmichael, L.M.1
Christman, R.F.2
Pfaender, F.K.3
-
4
-
-
0035993524
-
Anaerobic biodegradation of polycyclic aromatic hydrocarbon in soil
-
Chang BV, Shiung LC, Yuan SY (2002) Anaerobic biodegradation of polycyclic aromatic hydrocarbon in soil. Chemosphere 48:717-724
-
(2002)
Chemosphere
, vol.48
, pp. 717-724
-
-
Chang, B.V.1
Shiung, L.C.2
Yuan, S.Y.3
-
5
-
-
4644257150
-
Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens
-
Chin KJ, Esteve-Nunez A, Leang C, Lovley DR (2004) Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens. Appl Environ Microbiol 70:5183-5189
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5183-5189
-
-
Chin, K.J.1
Esteve-Nunez, A.2
Leang, C.3
Lovley, D.R.4
-
6
-
-
0030044304
-
Oxidation of polycyclic aromatic hydrocarbons under sulfate-reducing conditions
-
Coates JD, Anderson RT, Lovley DR (1996) Oxidation of polycyclic aromatic hydrocarbons under sulfate-reducing conditions. Appl Environ Microbiol 62:1099-1101
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 1099-1101
-
-
Coates, J.D.1
Anderson, R.T.2
Lovley, D.R.3
-
7
-
-
0030832084
-
Anaerobic degradation of polycyclic aromatic hydrocarbons and alkanes in petroleum-contaminated marine harbor sediments
-
Coates JD, Woodward J, Allen J, Philp, P, Lovley DR (1997) Anaerobic degradation of polycyclic aromatic hydrocarbons and alkanes in petroleum-contaminated marine harbor sediments. Appl Environ Microbiol 63:3589-3593
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3589-3593
-
-
Coates, J.D.1
Woodward, J.2
Allen, J.3
Philp, P.4
Lovley, D.R.5
-
9
-
-
0013258174
-
Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin
-
Dhillon A, Teske A, Dillon J, Stahl DA, Sogin ML (2003) Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin. Appl Environ Microbiol 69:2765-2772
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2765-2772
-
-
Dhillon, A.1
Teske, A.2
Dillon, J.3
Stahl, D.A.4
Sogin, M.L.5
-
10
-
-
0024151127
-
Anaerobic degradation of aromatic compounds
-
Evans WC, Fuchs G (1988) Anaerobic degradation of aromatic compounds. Annu Rev Microbiol 42:289-317
-
(1988)
Annu Rev Microbiol
, vol.42
, pp. 289-317
-
-
Evans, W.C.1
Fuchs, G.2
-
11
-
-
0029805854
-
Direct ribosome isolation from soil to extract bacterial rRNA for community analysis
-
Felske A, Engelen B, Nubel U, Backhaus H (1996) Direct ribosome isolation from soil to extract bacterial rRNA for community analysis. Appl Environ Microbiol 62:4162-4167
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 4162-4167
-
-
Felske, A.1
Engelen, B.2
Nubel, U.3
Backhaus, H.4
-
12
-
-
0027231336
-
Quantitative relationship between naphthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites
-
Fleming JT, Sanseverino J, Sayler GS (1993) Quantitative relationship between naphthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites. Environ SciTechnol 27:1068-1074
-
(1993)
Environ SciTechnol
, vol.27
, pp. 1068-1074
-
-
Fleming, J.T.1
Sanseverino, J.2
Sayler, G.S.3
-
13
-
-
0033206805
-
Anaerobic degradation of naphthalene by a pure culture of a novel type of marine sulphate-reducing bacterium
-
Galushko A, Minz D, Schink B, Widdel F (1999) Anaerobic degradation of naphthalene by a pure culture of a novel type of marine sulphate-reducing bacterium. Environ Microbiol 1:415-420
-
(1999)
Environ Microbiol
, vol.1
, pp. 415-420
-
-
Galushko, A.1
Minz, D.2
Schink, B.3
Widdel, F.4
-
14
-
-
0032821317
-
Role of prior exposure on anaerobic degradation of naphthalene and phenanthrene in marine harbor sediments
-
Hayes LA, Nevin KP, Lovley DR (1999) Role of prior exposure on anaerobic degradation of naphthalene and phenanthrene in marine harbor sediments. Org Geochem 30:937-945
-
(1999)
Org Geochem
, vol.30
, pp. 937-945
-
-
Hayes, L.A.1
Nevin, K.P.2
Lovley, D.R.3
-
15
-
-
0036051361
-
Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments
-
Hayes LA, Lovley DR (2002) Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments. Microb Ecol 43:134-145
-
(2002)
Microb Ecol
, vol.43
, pp. 134-145
-
-
Hayes, L.A.1
Lovley, D.R.2
-
16
-
-
32044456428
-
Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes
-
Holmes DE, Nevin KP, O'Neil RA, Ward JE, Adams LA, Woodward TL, Vrionis HA, Lovley DR (2005) Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes. Appl Environ Microbiol 71:6870-6877
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 6870-6877
-
-
Holmes, D.E.1
Nevin, K.P.2
O'Neil, R.A.3
Ward, J.E.4
Adams, L.A.5
Woodward, T.L.6
Vrionis, H.A.7
Lovley, D.R.8
-
17
-
-
0008048504
-
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses
-
Lane DJ, Pace B, Olsen GJ, Stahl DA, Sogin ML, Pace NR (1985) Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci USA 82:6955-6959
-
(1985)
Proc Natl Acad Sci USA
, vol.82
, pp. 6955-6959
-
-
Lane, D.J.1
Pace, B.2
Olsen, G.J.3
Stahl, D.A.4
Sogin, M.L.5
Pace, N.R.6
-
18
-
-
11844297290
-
Biodegradation of sediment-bound PAHs in field-contaminated sediment
-
Lei L, Khodadoust AP, Suidan MT, Tabak HH (2005) Biodegradation of sediment-bound PAHs in field-contaminated sediment. Water Res 39:349-361
-
(2005)
Water Res
, vol.39
, pp. 349-361
-
-
Lei, L.1
Khodadoust, A.P.2
Suidan, M.T.3
Tabak, H.H.4
-
19
-
-
0842265917
-
Molecular quantification of sulfate-reducing microorganisms (carrying dsrAB genes) by competitive PCR in estuarine sediments
-
Leloup J, Quillet L, Oger C, Boust D, Petit F (2004) Molecular quantification of sulfate-reducing microorganisms (carrying dsrAB genes) by competitive PCR in estuarine sediments. FEMS Microbiol Ecol 47:207-214
-
(2004)
FEMS Microbiol Ecol
, vol.47
, pp. 207-214
-
-
Leloup, J.1
Quillet, L.2
Oger, C.3
Boust, D.4
Petit, F.5
-
20
-
-
0034437920
-
Anaerobic benzene degradation
-
Lovley DR (2000) Anaerobic benzene degradation. Biodegradation 11:107-116
-
(2000)
Biodegradation
, vol.11
, pp. 107-116
-
-
Lovley, D.R.1
-
21
-
-
2142763872
-
Cleaning up with genomics: Applying molecular biology to bioremediation
-
Lovley DR (2003) Cleaning up with genomics: Applying molecular biology to bioremediation. Nat Rev Microbiol 1:35-44
-
(2003)
Nat Rev Microbiol
, vol.1
, pp. 35-44
-
-
Lovley, D.R.1
-
22
-
-
0024530378
-
Oxidation of aromatic contaminants coupled to microbial iron reduction
-
Lovley DR, Baedecker MJ, Lonergan DJ, Cozzarelli IM, Phillips EJP, Siegel DI (1989) Oxidation of aromatic contaminants coupled to microbial iron reduction. Nature 339:297-299
-
(1989)
Nature
, vol.339
, pp. 297-299
-
-
Lovley, D.R.1
Baedecker, M.J.2
Lonergan, D.J.3
Cozzarelli, I.M.4
Phillips, E.J.P.5
Siegel, D.I.6
-
23
-
-
0025363083
-
Anaerobic oxidation of toluene, phenol, and p-cresol by the dissimilatory iron-reducing organism GS-15
-
Lovley DR, Lonergan DJ (1990) Anaerobic oxidation of toluene, phenol, and p-cresol by the dissimilatory iron-reducing organism GS-15. Appl Environ Microbiol 56:1858-1864
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 1858-1864
-
-
Lovley, D.R.1
Lonergan, D.J.2
-
24
-
-
0028338462
-
Novel processes for anaerobic sulfate production from elemental sulfur by sulfate-reducing bacteria
-
Lovley DR, Phillips EJP (1994) Novel processes for anaerobic sulfate production from elemental sulfur by sulfate-reducing bacteria. Appl Environ Microbiol 60:2394-2399
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 2394-2399
-
-
Lovley, D.R.1
Phillips, E.J.P.2
-
25
-
-
0343503030
-
Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores
-
Ludemann H, Arth I, Liesack W (2000) Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores. Appl Environ Microbiol 66:754-762
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 754-762
-
-
Ludemann, H.1
Arth, I.2
Liesack, W.3
-
27
-
-
0032701629
-
Anaerobic degradation of m-cresol by Desulfobacterium cetonicum is initiated by formation of 3-hydroxybenzylsuccinate
-
Muller JA, Galushko AS, Kappler A, Schink B (1999) Anaerobic degradation of m-cresol by Desulfobacterium cetonicum is initiated by formation of 3-hydroxybenzylsuccinate. Arch Microbiol 172:287-294
-
(1999)
Arch Microbiol
, vol.172
, pp. 287-294
-
-
Muller, J.A.1
Galushko, A.S.2
Kappler, A.3
Schink, B.4
-
28
-
-
0028116029
-
MerA gene expression in aquatic environments measured by mRNA production and Hg(II) volatilization
-
Nazaret S, Jeffrey WH, Saouter ER, Von Haven R, Barkay T (1994) merA gene expression in aquatic environments measured by mRNA production and Hg(II) volatilization. Appl Environ Microbiol 60:4059-4065
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 4059-4065
-
-
Nazaret, S.1
Jeffrey, W.H.2
Saouter, E.R.3
Von Haven, R.4
Barkay, T.5
-
29
-
-
12544256650
-
Diversity of functional genes of methanogens, methanotrophs and sulfate reducers in deep-sea hydrothermal environments
-
Nercessian O, Bienvenu N, Moreira D, Prieur D, Jeanthon C (2005) Diversity of functional genes of methanogens, methanotrophs and sulfate reducers in deep-sea hydrothermal environments. Environ Microbiol 7:118-132
-
(2005)
Environ Microbiol
, vol.7
, pp. 118-132
-
-
Nercessian, O.1
Bienvenu, N.2
Moreira, D.3
Prieur, D.4
Jeanthon, C.5
-
30
-
-
0041696956
-
Quantification of dissimilatory (bi)sulphite reductase gene expression in Desulfobacterium autotrophicum using real-time RT-PCR
-
Neretin LN, Schippers A, Pernthaler A, Hamann K, Amann R, Jorgensen BB (2003) Quantification of dissimilatory (bi)sulphite reductase gene expression in Desulfobacterium autotrophicum using real-time RT-PCR. Environ Microbiol 5:660-671
-
(2003)
Environ Microbiol
, vol.5
, pp. 660-671
-
-
Neretin, L.N.1
Schippers, A.2
Pernthaler, A.3
Hamann, K.4
Amann, R.5
Jorgensen, B.B.6
-
31
-
-
0021197001
-
Hydrogenase, electron transfer proteins, and energy coupling in the sulfate-reducing bacteria Desulfovibrio
-
Odom JM, Peck HD, Jr (1984) Hydrogenase, electron transfer proteins, and energy coupling in the sulfate-reducing bacteria Desulfovibrio. Annu Rev Microbiol 38:551-592
-
(1984)
Annu Rev Microbiol
, vol.38
, pp. 551-592
-
-
Odom, J.M.1
Peck Jr., H.D.2
-
32
-
-
0000159756
-
Use of "specific inhibitors" in biogeochemistry and microbial ecology
-
Oremland RS, Capone DG (1988) Use of "specific inhibitors" in biogeochemistry and microbial ecology. Adv Microb Ecol 10:285-383
-
(1988)
Adv Microb Ecol
, vol.10
, pp. 285-383
-
-
Oremland, R.S.1
Capone, D.G.2
-
33
-
-
0035072290
-
Molecular characterization of sulfate-reducing bacteria in anaerobic hydrocarbon-degrading consortia and pure cultures using the dissimilatory sulfite reductase (dsrAB) genes
-
Perez-Jimenez JR, Young LY, Kerkhof LJ (2001) Molecular characterization of sulfate-reducing bacteria in anaerobic hydrocarbon-degrading consortia and pure cultures using the dissimilatory sulfite reductase (dsrAB) genes. FEMS Microbiol Ecol 35:145-150
-
(2001)
FEMS Microbiol Ecol
, vol.35
, pp. 145-150
-
-
Perez-Jimenez, J.R.1
Young, L.Y.2
Kerkhof, L.J.3
-
34
-
-
13544259591
-
Phylogeography of sulfate-reducing bacteria among disturbed sediments, disclosed by analysis of the dissimilatory sulfite reductase genes (dsrAB)
-
Perez-Jimenez JR, Kerkhof LJ (2005) Phylogeography of sulfate-reducing bacteria among disturbed sediments, disclosed by analysis of the dissimilatory sulfite reductase genes (dsrAB). Appl Environ Microbiol 71:1004-1011
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1004-1011
-
-
Perez-Jimenez, J.R.1
Kerkhof, L.J.2
-
35
-
-
0003341851
-
Development and application of nucleic acid probes
-
John Wiley and Sons Chichester, England
-
Stahl DA, Amann R (1991) Development and application of nucleic acid probes. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics, John Wiley and Sons, Chichester, England, pp 205-248
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 205-248
-
-
Stahl, D.A.1
Amann, R.2
Stackebrandt, E.3
Goodfellow, M.4
-
36
-
-
0037110508
-
Anaerobic, sulfate-dependent degradation of polycyclic aromatic hydrocarbons in petroleum-contaminated harbor sediment
-
Rothermich MM, Hayes LA, Lovley DR (2002) Anaerobic, sulfate-dependent degradation of polycyclic aromatic hydrocarbons in petroleum-contaminated harbor sediment. Environ Sci Technol 36:4811-4817
-
(2002)
Environ Sci Technol
, vol.36
, pp. 4811-4817
-
-
Rothermich, M.M.1
Hayes, L.A.2
Lovley, D.R.3
-
37
-
-
0029662670
-
Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria
-
Voordouw G, Armstrong SM, Reimer MF, Fouts B, Telang AJ, Shen Y, Gevertz D (1996) Characterization of 16S rRNA genes from oil field microbial communities indicates the presence of a variety of sulfate-reducing, fermentative, and sulfide-oxidizing bacteria. Appl Environ Microbiol 62:1623-1629
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 1623-1629
-
-
Voordouw, G.1
Armstrong, S.M.2
Reimer, M.F.3
Fouts, B.4
Telang, A.J.5
Shen, Y.6
Gevertz, D.7
-
38
-
-
0032463021
-
Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration
-
Wagner M, Roger AJ, Flax JL, Brusseau GA, Stahl DA (1998) Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. J Bacteriol 180:2975-2982
-
(1998)
J Bacteriol
, vol.180
, pp. 2975-2982
-
-
Wagner, M.1
Roger, A.J.2
Flax, J.L.3
Brusseau, G.A.4
Stahl, D.A.5
-
40
-
-
0035370088
-
Anaerobic biodegradation of saturated and aromatic hydrocarbons
-
Widdel F, Rabus R (2001) Anaerobic biodegradation of saturated and aromatic hydrocarbons. Curr Opin Biotechnol 12:259-276
-
(2001)
Curr Opin Biotechnol
, vol.12
, pp. 259-276
-
-
Widdel, F.1
Rabus, R.2
|