메뉴 건너뛰기




Volumn 71, Issue 11, 2005, Pages 6870-6877

Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes

Author keywords

[No Author keywords available]

Indexed keywords

BIOREMEDIATION; ENZYMES; GENES; METABOLISM; RNA; URANIUM;

EID: 32044456428     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.11.6870-6877.2005     Document Type: Article
Times cited : (107)

References (47)
  • 2
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R. I., B. J. Binder, R. J. Olson, S. W. Chisholm, R. Devereux, and D. A. Stahl. 1990. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 3
    • 0033302932 scopus 로고    scopus 로고
    • Degradation of naphthalene and benzene under Fe(III)-reducing conditions in petroleum-contaminated aquifers
    • Anderson, R. T., and D. R. Lovley. 1998. Degradation of naphthalene and benzene under Fe(III)-reducing conditions in petroleum-contaminated aquifers. Bioremed. J. 3:121-135.
    • (1998) Bioremed. J. , vol.3 , pp. 121-135
    • Anderson, R.T.1    Lovley, D.R.2
  • 4
    • 0032080492 scopus 로고    scopus 로고
    • Anaerobic benzene oxidation in the Fe(III)-reduction zone of petroleum-contaminated aquifers
    • Anderson, R. T., J. Rooney-Varga, C. V. Gaw, and D. R. Lovley. 1998. Anaerobic benzene oxidation in the Fe(III)-reduction zone of petroleum-contaminated aquifers. Environ. Sci. Technol. 32:1222-1229.
    • (1998) Environ. Sci. Technol. , vol.32 , pp. 1222-1229
    • Anderson, R.T.1    Rooney-Varga, J.2    Gaw, C.V.3    Lovley, D.R.4
  • 7
    • 0008306383 scopus 로고
    • The fate and effects of crude oil in a shallow aquifer. I. The distribution of chemical species and geochemical facies
    • G. E. Mallard and S. E. Ragone (ed.), U.S. Geological Survey, Reston, Va.
    • Baedecker, M. J., D. I. Siegel, P. Bennett, and I. M. Cozzarelli. 1989. The fate and effects of crude oil in a shallow aquifer. I. The distribution of chemical species and geochemical facies, p. 13-20. In G. E. Mallard and S. E. Ragone (ed.), U.S. Geological Survey Water Resources Division report 88-4220. U.S. Geological Survey, Reston, Va.
    • (1989) U.S. Geological Survey Water Resources Division Report 88-4220 , pp. 13-20
    • Baedecker, M.J.1    Siegel, D.I.2    Bennett, P.3    Cozzarelli, I.M.4
  • 9
    • 0037127004 scopus 로고    scopus 로고
    • Electrode-reducing microorganisms that harvest energy from marine sediments
    • Bond, D. R., D. E. Holmes, L. M. Tender, and D. R. Lovley. 2002. Electrode-reducing microorganisms that harvest energy from marine sediments. Science 295:483-485.
    • (2002) Science , vol.295 , pp. 483-485
    • Bond, D.R.1    Holmes, D.E.2    Tender, L.M.3    Lovley, D.R.4
  • 10
    • 0037337606 scopus 로고    scopus 로고
    • Electricity production by Geobacter sulfurreducens attached to electrodes
    • Bond, D. R., and D. R. Lovley. 2003. Electricity production by Geobacter sulfurreducens attached to electrodes. Appl. Environ. Microbiol. 69: 1548-1555.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1548-1555
    • Bond, D.R.1    Lovley, D.R.2
  • 11
    • 22144484190 scopus 로고    scopus 로고
    • A eukaryotic-like citrate synthase with novel biochemical properties in the Geobacteraceae
    • Bond, D. R., C. Nesbø, A. Lopez, T. Mester, F. L. Collart, and D. R. Lovley. 2005. A eukaryotic-like citrate synthase with novel biochemical properties in the Geobacteraceae. Appl. Environ Microbiol. 71:3858-3865.
    • (2005) Appl. Environ Microbiol. , vol.71 , pp. 3858-3865
    • Bond, D.R.1    Nesbø, C.2    Lopez, A.3    Mester, T.4    Collart, F.L.5    Lovley, D.R.6
  • 12
    • 0031856336 scopus 로고    scopus 로고
    • A web compatible database search or multiple alignment viewer
    • Brown, N. P., C. Leroy, and C. Sandaer. 1998. A web compatible database search or multiple alignment viewer. Bioinformatics 14:380-381.
    • (1998) Bioinformatics , vol.14 , pp. 380-381
    • Brown, N.P.1    Leroy, C.2    Sandaer, C.3
  • 13
    • 4644257150 scopus 로고    scopus 로고
    • Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens
    • Chin, K.-J., A. Esteve-Núñez, C. Leang, and D. R. Lovley. 2004. Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens. Appl. Environ. Microbiol. 70:5183-5189.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 5183-5189
    • Chin, K.-J.1    Esteve-Núñez, A.2    Leang, C.3    Lovley, D.R.4
  • 16
    • 0025591692 scopus 로고
    • Transformation of monoaromatic hydrocarbons to organic acids in anoxic groundwater environment
    • Cozzarelli, I. M., R. P. Eaganhouse, and M. J. Baedecker. 1990. Transformation of monoaromatic hydrocarbons to organic acids in anoxic groundwater environment. Environ. Geol. Water Sci. 16:135-141.
    • (1990) Environ. Geol. Water Sci. , vol.16 , pp. 135-141
    • Cozzarelli, I.M.1    Eaganhouse, R.P.2    Baedecker, M.J.3
  • 17
    • 0025869974 scopus 로고
    • Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA
    • Eden, P. E., T. M. Schmidt, R. P. Blakemore, and N. R. Pace. 1991. Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA. Int. J. Syst. Bacteriol. 41:324-325.
    • (1991) Int. J. Syst. Bacteriol. , vol.41 , pp. 324-325
    • Eden, P.E.1    Schmidt, T.M.2    Blakemore, R.P.3    Pace, N.R.4
  • 18
    • 17844363250 scopus 로고    scopus 로고
    • Growth of Geobacter sulfurreducens under nutrient-limiting conditions in continuous culture
    • Esteve-Núñez, A., M. M. Rothermich, M. Sharma, and D. R. Lovley. 2005. Growth of Geobacter sulfurreducens under nutrient-limiting conditions in continuous culture. Environ. Microbiol. 7:641-648.
    • (2005) Environ. Microbiol. , vol.7 , pp. 641-648
    • Esteve-Núñez, A.1    Rothermich, M.M.2    Sharma, M.3    Lovley, D.R.4
  • 19
    • 0033681074 scopus 로고    scopus 로고
    • Oxidation of acetate through reactions of the citric acid cycle by Geobacter sulfurreducens in pure culture and in syntrophic coculture
    • Galushko, A. S., and B. Schink. 2000. Oxidation of acetate through reactions of the citric acid cycle by Geobacter sulfurreducens in pure culture and in syntrophic coculture. Arch. Microbiol. 174:314-321.
    • (2000) Arch. Microbiol. , vol.174 , pp. 314-321
    • Galushko, A.S.1    Schink, B.2
  • 20
    • 2642518174 scopus 로고    scopus 로고
    • Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments
    • Holmes, D. E., D. R. Bond, R. A. O'Neil, C. E. Reimers, L. R. Tender, and D. R. Lovley. 2004. Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments. Microb. Ecol. 48:178-190.
    • (2004) Microb. Ecol. , vol.48 , pp. 178-190
    • Holmes, D.E.1    Bond, D.R.2    O'Neil, R.A.3    Reimers, C.E.4    Tender, L.R.5    Lovley, D.R.6
  • 21
    • 0036249528 scopus 로고    scopus 로고
    • Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments
    • Holmes, D. E., K. T. Finneran, R. A. O'Neil, and D. R. Lovley. 2002. Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments. Appl. Environ. Microbiol. 68:2300-2306.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2300-2306
    • Holmes, D.E.1    Finneran, K.T.2    O'Neil, R.A.3    Lovley, D.R.4
  • 22
    • 5444244948 scopus 로고    scopus 로고
    • Comparison of 16S rRNA, nifD, recA, rpoB, and fusA genes within the family Geobacteraceae
    • Holmes, D. E., K. P. Nevin, and D. R. Lovley. 2004. Comparison of 16S rRNA, nifD, recA, rpoB, and fusA genes within the family Geobacteraceae. Int. J. Syst. Evol. Microbiol. 54:1591-1599.
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 1591-1599
    • Holmes, D.E.1    Nevin, K.P.2    Lovley, D.R.3
  • 23
    • 10444268971 scopus 로고    scopus 로고
    • In situ expression of Geobacteraceae nifD in subsurface sediments
    • Holmes, D. E., K. P. Nevin, and D. R. Lovley. 2004. In situ expression of Geobacteraceae nifD in subsurface sediments. Appl. Environ. Microbiol. 70:7251-7259.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 7251-7259
    • Holmes, D.E.1    Nevin, K.P.2    Lovley, D.R.3
  • 24
    • 0347274426 scopus 로고
    • Ground-water contamination by crude oil at Bemidji, Minnesota, research site. U.S. Geological Survey toxic waste-ground-water contamination study
    • U.S. Geological Survey, Reston, Va.
    • Hult, M. F. 1984. Ground-water contamination by crude oil at Bemidji, Minnesota, research site. U.S. Geological Survey toxic waste-ground-water contamination study. U.S. Geological Survey Water Resources Investigations report 84-4188. U.S. Geological Survey, Reston, Va.
    • (1984) U.S. Geological Survey Water Resources Investigations Report 84-4188
    • Hult, M.F.1
  • 27
    • 0037379469 scopus 로고    scopus 로고
    • OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens
    • Leang, C., M. V. Coppi, and D. R. Lovley. 2003. OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens. J. Bacteriol. 185:2096-2103.
    • (2003) J. Bacteriol. , vol.185 , pp. 2096-2103
    • Leang, C.1    Coppi, M.V.2    Lovley, D.R.3
  • 28
    • 2142763872 scopus 로고    scopus 로고
    • Cleaning up with genomics: Applying molecular biology to bioremediation
    • Lovley, D. R. 2003. Cleaning up with genomics: applying molecular biology to bioremediation. Nat. Microbiol. 1:35-44.
    • (2003) Nat. Microbiol. , vol.1 , pp. 35-44
    • Lovley, D.R.1
  • 30
    • 0029540914 scopus 로고
    • Deep subsurface microbial processes
    • Lovley, D. R., and F. H. Chapelle. 1995. Deep subsurface microbial processes. Rev. Geophys. 33:365-381.
    • (1995) Rev. Geophys. , vol.33 , pp. 365-381
    • Lovley, D.R.1    Chapelle, F.H.2
  • 33
    • 22544468862 scopus 로고    scopus 로고
    • Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates
    • Nevin, K. P., D. E. Holmes, T. L. Woodard, E. S. Hinlein, D. W. Ostendorf, and D. R. Lovley. 2005. Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates. Int. J. Syst. Evol. Microbiol. 55:1667-1674.
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 1667-1674
    • Nevin, K.P.1    Holmes, D.E.2    Woodard, T.L.3    Hinlein, E.S.4    Ostendorf, D.W.5    Lovley, D.R.6
  • 34
    • 0014528360 scopus 로고
    • Methanogenic fermentation of benzoate
    • Nottingham, P. M., and R. E. Hungate. 1969. Methanogenic fermentation of benzoate. J. Bacteriol. 98:1170-1172.
    • (1969) J. Bacteriol. , vol.98 , pp. 1170-1172
    • Nottingham, P.M.1    Hungate, R.E.2
  • 35
    • 2442638056 scopus 로고    scopus 로고
    • Vanadium respiration by Geobacter metallireducens: Novel strategy for in situ removal of vanadium from groundwater
    • Ortiz-Bernad, I., R. Anderson, H. Vrionis, and D. Lovley. 2004. Vanadium respiration by Geobacter metallireducens: novel strategy for in situ removal of vanadium from groundwater. Appl. Environ. Microbiol. 70:3091-3095.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3091-3095
    • Ortiz-Bernad, I.1    Anderson, R.2    Vrionis, H.3    Lovley, D.4
  • 37
    • 2142853093 scopus 로고    scopus 로고
    • Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI)
    • Petrie, L., N. N. North, S. L. Dollhopf, D. Balkwill, and J. E. Kostka. 2003. Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI). Appl. Environ. Microbiol. 69:7467-7479.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7467-7479
    • Petrie, L.1    North, N.N.2    Dollhopf, S.L.3    Balkwill, D.4    Kostka, J.E.5
  • 39
    • 0035491310 scopus 로고    scopus 로고
    • Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer
    • Roling, W. F. M., B. M. van Breukelen, B. L. Braster, and H. W. van Verseveld. 2001. Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer. Appl. Environ. Microbiol. 67:4619-4629.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4619-4629
    • Roling, W.F.M.1    Van Breukelen, B.M.2    Braster, B.L.3    Van Verseveld, H.W.4
  • 40
    • 0032976385 scopus 로고    scopus 로고
    • Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer
    • Rooney-Varga, J. N., R. T. Anderson, J. L. Fraga, D. Ringelberg, and D. R. Lovley. 1999. Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer. Appl. Environ. Microbiol. 65:3056-3064.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3056-3064
    • Rooney-Varga, J.N.1    Anderson, R.T.2    Fraga, J.L.3    Ringelberg, D.4    Lovley, D.R.5
  • 41
    • 0034042288 scopus 로고    scopus 로고
    • Enrichment of Geobacter species in response to stimulation of Fe(III) reduction in sandy aquifer sediments
    • Snoeyenhos-West, O. L., K. P. Nevin, R. T. Anderson, and D. R. Lovley. 2000. Enrichment of Geobacter species in response to stimulation of Fe(III) reduction in sandy aquifer sediments. Microb. Ecol. 39:153-167.
    • (2000) Microb. Ecol. , vol.39 , pp. 153-167
    • Snoeyenhos-West, O.L.1    Nevin, K.P.2    Anderson, R.T.3    Lovley, D.R.4
  • 44
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 45
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.