The AT-hook-containing proteins SOB3/AHL29 and ESC/AHL27 are negative modulators of hypocotyl growth in Arabidopsis

Plant Journal

Volumn 54, Issue 1, 2008, Pages 1-14

  Street, Ian H ^a   Shah, Purvi K ^a,b   Smith, Alison M ^a,c   Avery, Nathan ^a,d   Neff, Michael M ^a,e  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b NORTHWESTERN UNIVERSITY   (United States)

^c EMORY UNIVERSITY   (United States)

^d THOMAS JEFFERSON UNIVERSITY   (United States)

^e WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

AT hook; Cell expansion; Development; Hypocotyl; Light; Transcription

Indexed keywords

CELL EXPANSION; HYPOCOTYL GROWTH; PHOTORECEPTORS; SEEDLINGS;

GROWTH KINETICS; NUCLEOTIDES; PLANT CELL CULTURE; PROTEINS;

PLANTS (BOTANY);

ARABIDOPSIS PROTEIN; DNA BINDING PROTEIN; ESC PROTEIN, ARABIDOPSIS; SOB3 PROTEIN, ARABIDOPSIS; UNCLASSIFIED DRUG;

ALLELE; ARABIDOPSIS; ARTICLE; CELL ENLARGEMENT; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MULTIGENE FAMILY; MUTATION; PHOTOSYNTHESIS; PLANT GROWTH; TRANSGENIC PLANT;

ALLELES; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CELL ENLARGEMENT; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, PLANT; HYPOCOTYL; MULTIGENE FAMILY; MUTAGENESIS, INSERTIONAL; MUTATION; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PLANTS, GENETICALLY MODIFIED;

ARABIDOPSIS;

EID: 40949153065     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2007.03393.x     Document Type: Article

References (62)

1. Alonso, J.M., Stepanova, A.N., Leisse, T.J. et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science, 301, 653 657.
2. Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796 815.
3. Aravind, L. Landsman, D. (1998) AT-hook motifs identified in a wide variety of DNA-binding proteins. Nucleic Acids Res. 26, 4413 4421.
4. Casal, J.J. Yanovsky, M.J. (2005) Regulation of gene expression by light. Int. J. Dev. Biol. 49, 501 511.
5. Clough, S.J. Bent, A.F. (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of of Arabidopsis thaliana. Plant J. 16, 735 743.
6. Cluis, C.P., Mouchel, C.F. Hardtke, C.S. (2004) The Arabidopsis transcription factor HY5 integrates light and hormone signaling pathways. Plant J. 38, 332 347.
7. Coen, E., Rolland-Lagan, A.G., Matthews, M., Bangham, J.A. Prusinkiewicz, P. (2004) The genetics of geometry. Proc. Natl Acad. Sci. USA, 101, 4728 4735.
8. Curtis, M.D. Grossniklaus, U. (2003) A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol. 133, 462 469.
9. De Veylder, L., Beeckman, T., Beemster, G.T. et al. (2002) Control of proliferation, endoreduplication and differentiation by the Arabidopsis E2Fa-DPa transcription factor. EMBO J. 21, 1360 1368.
10. Earley, K., Haag, J.R., Pontes, O., Opper, K., Juehne, T., Song, K. Pikaard, C.S. (2006) Gateway-compatible vectors for plant functional genomics and proteomics. Plant J. 45, 616 629.
11. Folta, K.M., Pontin, M.A., Karlin-Neumann, G., Bottini, R. Spalding, E.P. (2003) Genomic and physiological studies of early cryptochrome 1 action demonstrate roles for auxin and gibberellin in the control of hypocotyl growth by blue light. Plant J. 36, 203 214.
12. Franklin, K.A., Davis, S.J., Stoddart, W.M., Vierstra, R.D. Whitelam, G.C. (2003) Mutant analyses define multiple roles for phytochrome C in Arabidopsis photomorphogenesis. Plant Cell, 15, 1981 1989.
13. Franklin, K.A., Larner, V.S. Whitelam, G.C. (2005) The signal transducing photoreceptors of plants. Int. J. Dev. Biol. 49, 653 664.
14. Fujimoto, S., Matsunaga, S., Yonemura, M., Uchiyama, S., Azuma, T. Fukui, K. (2004) Identification of a novel plant MAR DNA binding protein localized on chromosomal surfaces. Plant Mol. Biol. 56, 225 239.
15. Gendreau, E., Traas, J., Desnos, T., Grandjean, O., Caboche, M. Hofte, H. (1997) Cellular basis of hypocotyl growth in Arabidopsis thaliana. Plant Physiol. 114, 295 305.
16. Gendreau, E., Hofte, H., Grandjean, O., Brown, S. Traas, J. (1998) Phytochrome controls the number of endoreduplication cycles in the Arabidopsis thaliana hypocotyl. Plant J. 13, 221 230.
17. Grandjean, O., Vernoux, T., Laufs, P., Belcram, K., Mizukami, Y. Traas, J. (2004) In vivo analysis of cell division, cell growth, and differentiation at the shoot apical meristem in Arabidopsis. Plant Cell, 16, 74 87.
18. Grasser, K.D. (2003) Chromatin-associated HMGA and HMGB proteins: versatile co-regulators of DNA-dependent processes. Plant Mol. Biol. 53, 281 295.
19. Holm, M., Ma, L.G., Qu, L.J. Deng, X.W. (2002) Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis. Genes Dev. 16, 1247 1259.
20. Hsieh, H.L., Okamoto, H., Wang, M., Ang, L.H., Matsui, M., Goodman, H. Deng, X.W. (2000) FIN219, an auxin-regulated gene, defines a link between phytochrome A and the downstream regulator COP1 in light control of Arabidopsis development. Genes Dev. 14, 1958 1970.
21. Hu, Y., Xie, Q. Chua, N.H. (2003) The Arabidopsis auxin-inducible gene ARGOS controls lateral organ size. Plant Cell, 15, 1951 1961.
22. Jensen, P.J., Hangarter, R.P. Estelle, M. (1998) Auxin transport is required for hypocotyl elongation in light-grown but not dark-grown Arabidopsis. Plant Physiol. 116, 455 462.
23. Jiang, C.-Z. (2004) Inventor; Mendel Genetics, Inc. assignee. Method for modifiying plant biomass (US Patent 6,717,034). April 6, 43.
24. Kircher, S., Gil, P., Kozma-Bognar, L., Fejes, E., Speth, V., Husselstein-Muller, T., Bauer, D., Adam, E., Schafer, E. Nagy, F. (2002) Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm. Plant Cell, 14, 1541 1555.
25. Klosterman, S.J. Hadwiger, L.A. (2002) Plant HMG proteins bearing an AT-hook motif. Plant Sci. 162, 855 866.
26. Koornneef, M., Rolff, E. Spruit, C.J.P. (1980) Genetic control of light-inhibited hypocotyl elongation in Arabidopsis thaliana (L.). Heynh. Z. Pflanzenphysiol. 100S, 147 160.
27. Li, C., Potuschak, T., Colon-Carmona, A., Gutierrez, R.A. Doerner, P. (2005) Arabidopsis TCP20 links regulation of growth and cell division control pathways. Proc. Natl Acad. Sci. USA, 102, 12978 12983.
28. Lin, R. Wang, H. (2005) Two homologous ATP-binding cassette transporter proteins, AtMDR1 and AtPGP1, regulate Arabidopsis photomorphogenesis and root development by mediating polar auxin transport. Plant Physiol. 138, 949 964.
29. Lin, C., Yang, H., Guo, H., Mockler, T., Chen, J. Cashmore, A.R. (1998) Enhancement of blue-light sensitivity of Arabidopsis seedlings by a blue light receptor cryptochrome 2. Proc. Natl Acad. Sci. USA, 95, 2686 2690.
30. Liscum, E., Hodgson, D.W. Campbell, T.J. (2003) Blue light signaling through the cryptochromes and phototropins. So that's what the blues is all about. Plant Physiol. 133, 1429 1436.
31. Martinez-Garcia, J.F. Quail, P.H. (1999) The HMG-I/Y protein PF1 stimulates binding of the transcriptional activator GT-2 to the PHYA gene promoter. Plant J., 18, 173 183.
32. Matsushita, A., Furumoto, T., Ishida, S. Takahashi, Y. (2007) AGF1, an AT-Hook protein, is necessary for the negative feedback of AtGA3ox1 encoding GA 3-Oxidase. Plant Physiol. 143, 1152 1162.
33. Mizukami, Y. Fischer, R.L. (2000) Plant organ size control: AINTEGUMENTA regulates growth and cell numbers during organogenesis. Proc. Natl Acad. Sci. USA, 97, 942 947.
34. Moller, S.G., Ingles, P.J. Whitelam, G.C. (2002) The cell biology of phytochrome signalling. New Phytol., 154, 553 590.
35. Monte, E., Alonso, J.M., Ecker, J.R., Zhang, Y., Li, X., Young, J., Austin-Phillips, S. Quail, P.H. (2003) Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways. Plant Cell, 15, 1962 1980.
36. Morisawa, G., Han-Yama, A., Moda, I., Tamai, A., Iwabuchi, M. Meshi, T. (2000) AHM1, a novel type of nuclear matrix-localized, MAR binding protein with a single AT hook and a J domain-homologous region. Plant Cell, 12, 1903 1916.
37. Nath, U., Crawford, B.C., Carpenter, R. Coen, E. (2003) Genetic control of surface curvature. Science, 299, 1404 1407.
38. Neff, M.M. Chory, J. (1998) Genetic interactions between phytochrome A, phytochrome B, and cryptochrome 1 during Arabidopsis development. Plant Physiol. 118, 27 35.
39. Neff, M.M., Nguyen, S.M., Malancharuvil, E.J. et al. (1999) BAS1: A gene regulating brassinosteroid levels and light responsiveness in Arabidopsis. Proc. Natl Acad. Sci. USA, 96, 15316 15323.
40. Neff, M.M., Fankhauser, C. Chory, J. (2000) Light: an indicator of time and place. Genes Dev. 14, 257 271.
41. Neff, M.M., Turk, E. Kalishman, M. (2002) Web-based primer design for single nucleotide polymorphism analysis. Trends Genet. 18, 613 615.
42. Ohgishi, M., Saji, K., Okada, K. Sakai, T. (2004) Functional analysis of each blue light receptor, cry1, cry2, phot1, and phot2, by using combinatorial multiple mutants in Arabidopsis. Proc. Natl Acad. Sci. USA, 101, 2223 2228.
43. Oyama, T., Shimura, Y. Okada, K. (1997) The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl. Genes Dev. 11, 2983 2995.
44. Palatnik, J.F., Allen, E., Wu, X., Schommer, C., Schwab, R., Carrington, J.C. Weigel, D. (2003) Control of leaf morphogenesis by microRNAs. Nature, 425, 257 263.
45. Paul, A.L. Ferl, R.J. (1998) Higher order chromatin structures in maize and Arabidopsis. Plant Cell, 10, 1349 1359.
46. Ramirez-Parra, E., Desvoyes, B. Gutierrez, C. (2005) Balance between cell division and differentiation during plant development. Int. J. Dev. Biol. 49, 467 477.
47. Reddy, G.V. Meyerowitz, E.M. (2005) Stem-cell homeostasis and growth dynamics can be uncoupled in the Arabidopsis shoot apex. Science, 310, 663 667.
48. Reeves, R. (2001) Molecular biology of HMGA proteins: hubs of nuclear function. Gene, 277, 63 81.
49. Rudd, S., Frisch, M., Grote, K., Meyers, B.C., Mayer, K. Werner, T. (2004) Genome-wide in silico mapping of scaffold/matrix attachment regions in Arabidopsis suggests correlation of intragenic scaffold/matrix attachment regions with gene expression. Plant Physiol. 135, 715 722.
50. Serino, G. Deng, X.W. (2003) The COP9 signalosome: regulating plant development through the control of proteolysis. Annu. Rev. Plant Biol. 54, 165 182.
51. Shpak, E.D., Berthiaume, C.T., Hill, E.J. Torii, K.U. (2004) Synergistic interaction of three ERECTA-family receptor-like kinases controls Arabidopsis organ growth and flower development by promoting cell proliferation. Development, 131, 1491 1501.
52. Sugimoto-Shirasu, K., Roberts, G.R., Stacey, N.J., McCann, M.C., Maxwell, A. Roberts, K. (2005) RHL1 is an essential component of the plant DNA topoisomerase VI complex and is required for ploidy-dependent cell growth. Proc. Natl Acad. Sci. USA, 102, 18736 18741.
53. Tepperman, J.M., Hudson, M.E., Khanna, R., Zhu, T., Chang, S.H., Wang, X. Quail, P.H. (2004) Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation. Plant J. 38, 725 739.
54. Till, B.J., Reynolds, S.H., Greene, E.A. et al. (2003) Large-scale discovery of induced point mutations with high-throughput TILLING. Genome Res. 13, 524 530.
55. Tsukaya, H. (2005) Leaf shape: genetic controls and environmental factors. Int. J. Dev. Biol. 49, 547 555.
56. Turk, E.M., Fujioka, S., Seto, H. et al. (2005) BAS1 and SOB7 act redundantly to modulate Arabidopsis photomorphogenesis via unique brassinosteroid inactivation mechanisms. Plant J. 42, 23 34.
57. Vom Endt, D., Soares e Silva, M., Kijne, J.W., Pasquali, G. Memelink, J. (2007) Identification of a bipartite jasmonate-responsive promoter element in the Catharanthus roseus ORCA3 transcription factor gene that interacts specifically with AT-hook DNA-binding proteins. Plant Physiol. 144, 1680 1689.
58. Ward, J.M., Cufr, C.A., Denzel, M.A. Neff, M.M. (2005) The Dof transcription factor OBP3 modulates phytochrome and cryptochrome signaling in Arabidopsis. Plant Cell, 17, 475 485.
59. Weigel, D. Glazebrook, J. (2002) Arabidopsis : A Laboratory Manual. Cold Spring Harbor, NY : Cold Spring Harbor Laboratory Press.
60. Weigel, D., Ahn, J.H., Blazquez, M.A. et al. (2000) Activation tagging in Arabidopsis. Plant Physiol. 122, 1003 1013.
61. Zhang, J., Wrage, E.L., Vankova, R., Malbeck, J. Neff, M.M. (2006) Over-expression of SOB5 suggests the involvement of a novel plant protein in cytokinin-mediated development. Plant J., 46, 834 848.
62. Zimmerman, P., Hirsch-Hoffman, M., Hennig, L. Gruissem, W. (2004) GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol. 136, 2621 2632.