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Volumn 178, Issue 2, 2008, Pages 967-977

Phylogenetic fate mapping: Theoretical and experimental studies applied to the development of mouse fibroblasts

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CELL DIVISION; CELL GROWTH; CELL LINEAGE; CONTROLLED STUDY; DEVELOPMENTAL STAGE; DNA SEQUENCE; FIBROBLAST; GENE MAPPING; GENE MUTATION; GENOTYPE; MITOSIS; MOUSE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL;

EID: 40849102938     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.107.081018     Document Type: Article
Times cited : (23)

References (54)
  • 1
    • 33750953227 scopus 로고    scopus 로고
    • Whole-genome re-sequencing
    • BENTLEY, D. R., 2006 Whole-genome re-sequencing. Curr. Opin. Genet. Dev. 16: 545-552.
    • (2006) Curr. Opin. Genet. Dev , vol.16 , pp. 545-552
    • BENTLEY, D.R.1
  • 2
    • 0037087698 scopus 로고    scopus 로고
    • Sequence dependent instability of mononucleotide microsatellites in cultured mismatch repair proficient and deficient mammalian cells
    • BOYER, J. C., N. A. YAMADA, C. N. ROQUES, S. B. HATCH, K. RIESS et al., 2002 Sequence dependent instability of mononucleotide microsatellites in cultured mismatch repair proficient and deficient mammalian cells. Hum. Mol. Genet. 11: 707-713.
    • (2002) Hum. Mol. Genet , vol.11 , pp. 707-713
    • BOYER, J.C.1    YAMADA, N.A.2    ROQUES, C.N.3    HATCH, S.B.4    RIESS, K.5
  • 3
    • 0033629964 scopus 로고    scopus 로고
    • Evolution and development of distinct cell lineages derived from somites
    • BRAND-SABERI, B., and B. CHRIST, 2000 Evolution and development of distinct cell lineages derived from somites. Curr. Top. Dev. Biol. 48: 1-42.
    • (2000) Curr. Top. Dev. Biol , vol.48 , pp. 1-42
    • BRAND-SABERI, B.1    CHRIST, B.2
  • 4
    • 0001506104 scopus 로고    scopus 로고
    • Modulation of non-templated nucleotide addition by Taq DNA polymerase: Primer modifications that facilitate genotyping
    • 1004-1006
    • BROWNSTEIN, M. J., J. D. CARPTEN and J. R. SMITH, 1996 Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. Biotechniques 20: 1004-1006, 1008-1010.
    • (1996) Biotechniques , vol.20 , pp. 1008-1010
    • BROWNSTEIN, M.J.1    CARPTEN, J.D.2    SMITH, J.R.3
  • 5
    • 33746702019 scopus 로고    scopus 로고
    • Comparative genomic hybridization using DNA from laser capture microdissected tissue
    • CALLAGY, G., L. JACKSON and C. CALDAS, 2005 Comparative genomic hybridization using DNA from laser capture microdissected tissue. Methods Mol. Biol. 293: 39-55.
    • (2005) Methods Mol. Biol , vol.293 , pp. 39-55
    • CALLAGY, G.1    JACKSON, L.2    CALDAS, C.3
  • 6
    • 11144230352 scopus 로고    scopus 로고
    • Cadmium inhibits the functions of eukaryotic MutS complexes
    • CLARK, A. B., and T. A. KUNKEL, 2004 Cadmium inhibits the functions of eukaryotic MutS complexes. J. Biol. Chem. 279: 53903-53906.
    • (2004) J. Biol. Chem , vol.279 , pp. 53903-53906
    • CLARK, A.B.1    KUNKEL, T.A.2
  • 8
    • 0032948228 scopus 로고    scopus 로고
    • Multiple mutation analyses in single tumor cells with improved whole genome amplification
    • DIETMAIER, W., A. HARTMANN, S. WALLINGER, E. HEINMOLLER, T. KERNER et al., 1999 Multiple mutation analyses in single tumor cells with improved whole genome amplification. Am. J. Pathol. 154: 83-95.
    • (1999) Am. J. Pathol , vol.154 , pp. 83-95
    • DIETMAIER, W.1    HARTMANN, A.2    WALLINGER, S.3    HEINMOLLER, E.4    KERNER, T.5
  • 10
    • 0033988722 scopus 로고    scopus 로고
    • Retrospective tracing of the developmental lineage of the mouse myotome
    • ELOY-TRINQUET, S., L. MATHIS and J. F. NICOLAS, 2000 Retrospective tracing of the developmental lineage of the mouse myotome. Curr. Top. Dev. Biol. 47: 33-80.
    • (2000) Curr. Top. Dev. Biol , vol.47 , pp. 33-80
    • ELOY-TRINQUET, S.1    MATHIS, L.2    NICOLAS, J.F.3
  • 11
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: Inference and reliability
    • FELSENSTEIN, J., 1988 Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22: 521-565.
    • (1988) Annu. Rev. Genet , vol.22 , pp. 521-565
    • FELSENSTEIN, J.1
  • 12
    • 0025036950 scopus 로고
    • Frameshift mutagenesis by acridines and other reversibly-binding DNA ligands
    • FERGUSON, L. R., and W. A. DENNY, 1990 Frameshift mutagenesis by acridines and other reversibly-binding DNA ligands. Mutagenesis 5: 529-540.
    • (1990) Mutagenesis , vol.5 , pp. 529-540
    • FERGUSON, L.R.1    DENNY, W.A.2
  • 13
    • 0343443050 scopus 로고    scopus 로고
    • Primary cell cultures of bovine colon epithelium: Isolation and cell culture of colonocytes
    • FOLLMANN, W., S. WEBER and S. BIRKNER, 2000 Primary cell cultures of bovine colon epithelium: isolation and cell culture of colonocytes. Toxicol. In Vitro 14: 435-445.
    • (2000) Toxicol. In Vitro , vol.14 , pp. 435-445
    • FOLLMANN, W.1    WEBER, S.2    BIRKNER, S.3
  • 14
    • 84989485234 scopus 로고
    • The development of fibroblast colonies inmonolayer cultures of guineapig bone marrow and spleen cells
    • FRIEDENSTEIN, A. J., R. K. CHAILAKHJAN and K. S. LALYKINA, 1970 The development of fibroblast colonies inmonolayer cultures of guineapig bone marrow and spleen cells. Cell Tissue Kinet. 3: 393-403.
    • (1970) Cell Tissue Kinet , vol.3 , pp. 393-403
    • FRIEDENSTEIN, A.J.1    CHAILAKHJAN, R.K.2    LALYKINA, K.S.3
  • 16
    • 14544277657 scopus 로고    scopus 로고
    • Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences
    • HALL, B. G., 2005 Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences. Mol. Biol. Evol. 22: 792-802.
    • (2005) Mol. Biol. Evol , vol.22 , pp. 792-802
    • HALL, B.G.1
  • 17
    • 0029553183 scopus 로고
    • An overview of epithelio-mesenchymal transformation
    • HAY, E. D., 1995 An overview of epithelio-mesenchymal transformation. Acta Anat. 154: 8-20.
    • (1995) Acta Anat , vol.154 , pp. 8-20
    • HAY, E.D.1
  • 18
    • 11944260381 scopus 로고
    • Approaches for assessing phylogenetic accuracy
    • HILLIS, D. M., 1995 Approaches for assessing phylogenetic accuracy. Syst. Biol. 44: 3-16.
    • (1995) Syst. Biol , vol.44 , pp. 3-16
    • HILLIS, D.M.1
  • 19
    • 0024312004 scopus 로고
    • Dil and diO: Versatile fluorescent dyes for neuronal labelling and pathway tracing
    • HONIG, M. G., and R. I. HUME, 1989 Dil and diO: versatile fluorescent dyes for neuronal labelling and pathway tracing. Trends Neurosci. 12: 333-335, 340-341.
    • (1989) Trends Neurosci , vol.12 , Issue.333-335 , pp. 340-341
    • HONIG, M.G.1    HUME, R.I.2
  • 20
    • 0035861456 scopus 로고    scopus 로고
    • Bayesian inference of phylogeny and its impact on evolutionary biology
    • HUELSENBECK, J. P., F. RONQUIST, R. NIELSEN and J. P. BOLLBACK, 2001 Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294: 2310-2314.
    • (2001) Science , vol.294 , pp. 2310-2314
    • HUELSENBECK, J.P.1    RONQUIST, F.2    NIELSEN, R.3    BOLLBACK, J.P.4
  • 21
    • 9244263625 scopus 로고    scopus 로고
    • The use of whole genome amplification in the study of human disease
    • HUGHES, S., N. ARNESON, S. DONE and J. SQUIRE, 2005 The use of whole genome amplification in the study of human disease. Prog. Biophys. Mol. Biol. 88: 173-189.
    • (2005) Prog. Biophys. Mol. Biol , vol.88 , pp. 173-189
    • HUGHES, S.1    ARNESON, N.2    DONE, S.3    SQUIRE, J.4
  • 22
    • 0031678692 scopus 로고    scopus 로고
    • SplitsTree: Analyzing and visualizing evolutionary data
    • HUSON, D. H., 1998 SplitsTree: analyzing and visualizing evolutionary data. Bioinformatics 14: 68-73.
    • (1998) Bioinformatics , vol.14 , pp. 68-73
    • HUSON, D.H.1
  • 23
    • 0026047651 scopus 로고
    • Direct derivation of conditionally immortal cell lines from an H-2Kb-tsA58 transgenic mouse
    • JAT, P. S., M. D. NOBLE, P. ATALIOTIS, Y. TANAKA, N. YANNOUTSOS et al., 1991 Direct derivation of conditionally immortal cell lines from an H-2Kb-tsA58 transgenic mouse. Proc. Natl. Acad. Sci. USA 88: 5096-5100.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 5096-5100
    • JAT, P.S.1    NOBLE, M.D.2    ATALIOTIS, P.3    TANAKA, Y.4    YANNOUTSOS, N.5
  • 24
    • 2442694111 scopus 로고    scopus 로고
    • Tracing ancestry with methylation patterns: Most crypts appear distantly related in normal adult human colon
    • KIM, K. M., and D. SHIBATA, 2004 Tracing ancestry with methylation patterns: most crypts appear distantly related in normal adult human colon. BMC Gastroenterol. 4: 8.
    • (2004) BMC Gastroenterol , vol.4 , pp. 8
    • KIM, K.M.1    SHIBATA, D.2
  • 25
    • 29144521716 scopus 로고    scopus 로고
    • Counting human somatic cell replications: Methylation mirrors endometrial stem cell divisions
    • KIM, J. Y., S. TAVARE and D. SHIBATA, 2005 Counting human somatic cell replications: methylation mirrors endometrial stem cell divisions. Proc. Natl. Acad. Sci. USA 102: 17739-17744.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 17739-17744
    • KIM, J.Y.1    TAVARE, S.2    SHIBATA, D.3
  • 26
    • 0033551238 scopus 로고    scopus 로고
    • Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells
    • KLEIN, C. A., O. SCHMIDT-KITTLER, J. A. SCHARDT, K. PANTEL, M. R. SPEICHER et al., 1999 Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells. Proc. Natl. Acad. Sci. USA 96: 4494-4499.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 4494-4499
    • KLEIN, C.A.1    SCHMIDT-KITTLER, O.2    SCHARDT, J.A.3    PANTEL, K.4    SPEICHER, M.R.5
  • 28
    • 33745980209 scopus 로고    scopus 로고
    • New insights into the cell biology of the marginal zone of the spleen
    • KRAAL, G., and R. MEBIUS, 2006 New insights into the cell biology of the marginal zone of the spleen. Int. Rev. Cytol. 250: 175-215.
    • (2006) Int. Rev. Cytol , vol.250 , pp. 175-215
    • KRAAL, G.1    MEBIUS, R.2
  • 29
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • KUMAR, S., K. TAMURA and M. NEI, 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinformatics 5: 150-163.
    • (2004) Brief. Bioinformatics , vol.5 , pp. 150-163
    • KUMAR, S.1    TAMURA, K.2    NEI, M.3
  • 30
    • 34250728609 scopus 로고    scopus 로고
    • Immortal strands? Give me a break
    • LANSDORP, P. M., 2007 Immortal strands? Give me a break. Cell 129: 1244-1247.
    • (2007) Cell , vol.129 , pp. 1244-1247
    • LANSDORP, P.M.1
  • 31
    • 0028510206 scopus 로고
    • Jackknifing of weighted trees: Validation of phylogenies reconstructed from distance matrices
    • LAPOINTE, F. J., J. A. KIRSCH and R. BLEIWEISS, 1994 Jackknifing of weighted trees: validation of phylogenies reconstructed from distance matrices. Mol. Phylogenet. Evol. 3: 256-267.
    • (1994) Mol. Phylogenet. Evol , vol.3 , pp. 256-267
    • LAPOINTE, F.J.1    KIRSCH, J.A.2    BLEIWEISS, R.3
  • 32
    • 0025942116 scopus 로고
    • Clonal analysis of epiblast fate during germ layer formation in the mouse embryo
    • LAWSON, K. A., J. J. MENESES and R. A. PEDERSEN, 1991 Clonal analysis of epiblast fate during germ layer formation in the mouse embryo. Development 113: 891-911.
    • (1991) Development , vol.113 , pp. 891-911
    • LAWSON, K.A.1    MENESES, J.J.2    PEDERSEN, R.A.3
  • 33
    • 0032443527 scopus 로고    scopus 로고
    • Direct cloning of astrocytes from primary culture without previous immortalization
    • MBAREK, O., V. VERGE and T. HEVOR, 1998 Direct cloning of astrocytes from primary culture without previous immortalization. In Vitro Cell. Dev. Biol. Anim. 34: 401-411.
    • (1998) In Vitro Cell. Dev. Biol. Anim , vol.34 , pp. 401-411
    • MBAREK, O.1    VERGE, V.2    HEVOR, T.3
  • 34
    • 0021358147 scopus 로고
    • Direct mitogenic effects of insulin, epidermal growth factor, glucocorticoid, cholera toxin, unknown pituitary factors and possibly prolactin, but not androgen, on normal rat prostate epithelial cells in serum-free, primary cell culture
    • MCKEEHAN, W. L., P. S. ADAMS and M. P. ROSSER, 1984 Direct mitogenic effects of insulin, epidermal growth factor, glucocorticoid, cholera toxin, unknown pituitary factors and possibly prolactin, but not androgen, on normal rat prostate epithelial cells in serum-free, primary cell culture. Cancer Res. 44: 1998-2010.
    • (1984) Cancer Res , vol.44 , pp. 1998-2010
    • MCKEEHAN, W.L.1    ADAMS, P.S.2    ROSSER, M.P.3
  • 35
    • 0020644681 scopus 로고
    • X-chromosome inactivation mosaicism in the three germ layers and the germ line of the mouse embryo
    • MCMAHON, A., M. FOSTEN and M. MONK, 1983 X-chromosome inactivation mosaicism in the three germ layers and the germ line of the mouse embryo. J. Embryol. Exp. Morphol. 74: 207-220.
    • (1983) J. Embryol. Exp. Morphol , vol.74 , pp. 207-220
    • MCMAHON, A.1    FOSTEN, M.2    MONK, M.3
  • 36
    • 16844372863 scopus 로고    scopus 로고
    • Mesenchymal progenitor cells localize within hematopoietic sites throughout ontogeny
    • MENDES, S. C., C. ROBIN and E. DZIERZAK, 2005 Mesenchymal progenitor cells localize within hematopoietic sites throughout ontogeny. Development 132: 1127-1136.
    • (2005) Development , vol.132 , pp. 1127-1136
    • MENDES, S.C.1    ROBIN, C.2    DZIERZAK, E.3
  • 37
    • 30344473638 scopus 로고    scopus 로고
    • A novel algorithm and web-based tool for comparing two alternative phylogenetic trees
    • NYE, T. M., P. LIO and W. R. GILKS, 2006 A novel algorithm and web-based tool for comparing two alternative phylogenetic trees. Bioinformatics 22: 117-119.
    • (2006) Bioinformatics , vol.22 , pp. 117-119
    • NYE, T.M.1    LIO, P.2    GILKS, W.R.3
  • 38
    • 33751191415 scopus 로고    scopus 로고
    • Hematopoietic origin of fibroblasts/myofibroblasts: Its pathophysiologic implications
    • OGAWA, M., A. C. LARUE and C. J. DRAKE, 2006 Hematopoietic origin of fibroblasts/myofibroblasts: its pathophysiologic implications. Blood 108: 2893-2896.
    • (2006) Blood , vol.108 , pp. 2893-2896
    • OGAWA, M.1    LARUE, A.C.2    DRAKE, C.J.3
  • 39
    • 34250740943 scopus 로고    scopus 로고
    • The immortal strand hypothesis: Segregation and reconstruction
    • RANDO, T. A., 2007 The immortal strand hypothesis: segregation and reconstruction. Cell 129: 1239-1243.
    • (2007) Cell , vol.129 , pp. 1239-1243
    • RANDO, T.A.1
  • 40
    • 17744398025 scopus 로고    scopus 로고
    • More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy
    • ROKAS, A., and S. B. CARROLL, 2005 More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy. Mol. Biol. Evol. 22: 1337-1344.
    • (2005) Mol. Biol. Evol , vol.22 , pp. 1337-1344
    • ROKAS, A.1    CARROLL, S.B.2
  • 41
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • RONQUIST, F., and J. P. HUELSENBECK, 2003 MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • RONQUIST, F.1    HUELSENBECK, J.P.2
  • 43
    • 34247893943 scopus 로고    scopus 로고
    • A phylogenetic approach to mapping cell fate
    • edited by G. P. SCHATTEN. Academic Press, New York
    • SALIPANTE, S. J., and M. HORWITZ, 2007 A phylogenetic approach to mapping cell fate, pp. 157-184 in Current Topics in Developmental Biology, edited by G. P. SCHATTEN. Academic Press, New York.
    • (2007) Current Topics in Developmental Biology , pp. 157-184
    • SALIPANTE, S.J.1    HORWITZ, M.2
  • 44
    • 0022549490 scopus 로고    scopus 로고
    • allocation of cells to the somatic and germ cell lineages
    • 1986 Retroviruses as probes for mammalian development
    • SORIANO, P., and R. JAENISCH, 1986 Retroviruses as probes for mammalian development: allocation of cells to the somatic and germ cell lineages. Cell 46: 19-29.
    • Cell , vol.46 , pp. 19-29
    • SORIANO, P.1    JAENISCH, R.2
  • 45
    • 0022652256 scopus 로고
    • A simplified method for passage and long-term growth of human mammary epithelial cells
    • SOULE, H. D., and C. M. MCGRATH, 1986 A simplified method for passage and long-term growth of human mammary epithelial cells. In Vitro Cell. Dev. Biol. 22: 6-12.
    • (1986) In Vitro Cell. Dev. Biol , vol.22 , pp. 6-12
    • SOULE, H.D.1    MCGRATH, C.M.2
  • 46
    • 34248651810 scopus 로고    scopus 로고
    • Ifosfamide toxicity in cultured proximal renal tubule cells
    • SPRINGATE, J., and M. TAUB, 2007 Ifosfamide toxicity in cultured proximal renal tubule cells. Pediatr. Nephrol. 22: 358-365.
    • (2007) Pediatr. Nephrol , vol.22 , pp. 358-365
    • SPRINGATE, J.1    TAUB, M.2
  • 47
    • 0034842278 scopus 로고    scopus 로고
    • Tracing the lineage of tracing cell lineages
    • STERN, C. D., and S. E. FRASER, 2001 Tracing the lineage of tracing cell lineages. Nat. Cell. Biol. 3: E216-E218.
    • (2001) Nat. Cell. Biol , vol.3
    • STERN, C.D.1    FRASER, S.E.2
  • 48
    • 0023411038 scopus 로고
    • Proliferation of unilocular fat cells in the primary culture
    • SUGIHARA, H., N. YONEMITSU, S. MIYABARA and S. TODA, 1987 Proliferation of unilocular fat cells in the primary culture. J. Lipid Res. 28: 1038-1045.
    • (1987) J. Lipid Res , vol.28 , pp. 1038-1045
    • SUGIHARA, H.1    YONEMITSU, N.2    MIYABARA, S.3    TODA, S.4
  • 49
    • 0042970529 scopus 로고    scopus 로고
    • Caenorhabditis elegans: The cell lineage and beyond (Nobel lecture)
    • SULSTON, J. E., 2003 Caenorhabditis elegans: the cell lineage and beyond (Nobel lecture). Chem. Bio. Chem. 4: 688-696.
    • (2003) Chem. Bio. Chem , vol.4 , pp. 688-696
    • SULSTON, J.E.1
  • 50
    • 0020858899 scopus 로고
    • The embryonic cell lineage of the nematode Caenorhabditis elegans
    • SULSTON, J. E., E. SCHIERENBERG, J. G. WHITE and J. N. THOMSON, 1983 The embryonic cell lineage of the nematode Caenorhabditis elegans. Dev. Biol. 100: 64-119.
    • (1983) Dev. Biol , vol.100 , pp. 64-119
    • SULSTON, J.E.1    SCHIERENBERG, E.2    WHITE, J.G.3    THOMSON, J.N.4
  • 51
    • 0032922725 scopus 로고    scopus 로고
    • Growth potential and differentiation capacity of adult rat hepatocytes in vitro
    • TATENO, C., and K. YOSHIZATO, 1999 Growth potential and differentiation capacity of adult rat hepatocytes in vitro. Wound Repair Regen. 7: 36-44.
    • (1999) Wound Repair Regen , vol.7 , pp. 36-44
    • TATENO, C.1    YOSHIZATO, K.2
  • 52
    • 0028022784 scopus 로고
    • Immortalization of multiple cell types from transgenic mice using a transgene containing the vimentin promoter and a conditional oncogene
    • VICART, P., B. SCHWARTZ, A. VANDEWALLE, M. BENS, C. DELOUIS et al., 1994 Immortalization of multiple cell types from transgenic mice using a transgene containing the vimentin promoter and a conditional oncogene. Exp. Cell Res. 214: 35-45.
    • (1994) Exp. Cell Res , vol.214 , pp. 35-45
    • VICART, P.1    SCHWARTZ, B.2    VANDEWALLE, A.3    BENS, M.4    DELOUIS, C.5
  • 53
    • 38949201309 scopus 로고    scopus 로고
    • Reconstructing cellular lineages in endometrial cells
    • in press
    • WU, Y., and S. W. GUO, 2008 Reconstructing cellular lineages in endometrial cells. Fertil. Steril. (in press).
    • (2008) Fertil. Steril
    • WU, Y.1    GUO, S.W.2


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