Complex effects of foamy virus central purine-rich regions on viral replication

Virology

Volumn 373, Issue 1, 2008, Pages 51-60

  Peters, Katrin ^a   Barg, Nicole ^a   Gärtner, Kathleen ^a   Rethwilm, Axel ^a  

^a UNIVERSITY OF WÜRZBURG   (Germany)

Author keywords

Foamy virus; Poly purine tract; Polymerase encapsidation; Replication strategy; Reverse transcription

Indexed keywords

3' POLYPURINE; POL PROTEIN; PURINE; UNCLASSIFIED DRUG;

ARTICLE; CONTROLLED STUDY; DNA STRAND; EMBRYO; GENE EXPRESSION; GENE REPLICATION; GENE SEQUENCE; HUMAN; HUMAN CELL; MUTANT; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; REVERSE TRANSCRIPTION; SPUMA VIRUS; VIRUS GENE; VIRUS PARTICLE; VIRUS REPLICATION;

HUMAN SPUMARETROVIRUS;

EID: 40649122330     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2007.10.037     Document Type: Article

References (46)

1. N. Arhel S. Munier P. Souque K. Mollier P. Charneau Nuclear import defect of human immunodeficiency virus type 1 DNA flap mutants is not dependent on the viral strain or target cell type J. Virol. 80 2006 10262 10269
2. N.J. Arhel S. Souquere-Besse S. Munier P. Souque S. Guadagnini S. Rutherford M.C. Prevost T.D. Allen P. Charneau HIV-1 DNA Flap formation promotes uncoating of the pre-integration complex at the nuclear pore EMBO J. 26 2007 3025 3037
3. P.D. Bieniasz R.A. Weiss M.O. McClure Cell cycle dependence of foamy retrovirus infection J. Virol. 69 1995 7295 7299
4. E.H. Bowman V.K. Pathak W.S. Hu Efficient initiation and strand transfer of polypurine tract-primed plus-strand DNA prevent strand transfer of internally initiated plus-strand DNA J. Virol. 70 1996 1687 1694
5. P.L. Boyer C. Stenbak D. Hoberman M. Linial H.S. Hughes Fidelity of the prototype primate foamy virus (PFV) RT compared to HIV-1 RT Virology 367 2007 253 264
6. P. Charneau M. Alizon F. Clavel A second origin of DNA plus-strand synthesis is required for optimal human immunodeficiency virus replication J. Virol. 66 1992 2814 2820
7. P. Charneau G. Mirambeau P. Roux S. Paulous H. Buc F. Clavel HIV-1 reverse transcription. A termination step at the center of the genome J. Mol. Biol. 241 1994 651 662
8. C. Charpentier T. Nora O. Tenaillon F. Clavel A.J. Hance Extensive recombination among human immunodeficiency virus type 1 quasispecies makes an important contribution to viral diversity in individual patients J. Virol. 80 2006 2472 2482
9. O. Delelis A. Saïb P. Sonigo Biphasic DNA synthesis in spumaviruses J. Virol. 77 2003 8141 8146
10. J.D. Dvorin P. Bell P. Maul G.G. Yamashita M. Emermen M.H. Malim Reassasment of the roles of integrase and the central DNA flap in human immunodeficiency virus type 1 nuclear import J. Virol. 76 2002 12087 12096
11. J. Enssle A. Moebes M. Heinkelein M. Panhuysen B. Mauer M. Schweizer D. Neumann-Haefelin A. Rethwilm An active foamy virus integrase is required for virus replication J. Gen. Virol. 80 1999 1445 1452
12. G.M. Fuentes C. Palaniappan P.J. Fay R.A. Bambara Strand displacement synthesis in the central polypurine tract region of HIV-1 promotes DNA to DNA strand transfer recombination J. Biol. Chem. 271 1996 29605 29611
13. S. Goff Retroviridae: the retroviruses and their replication D.M. Kniepe P.M. Howley 5th Ed. Fields Virology vol. 2 2007 Lippincot Williams & Wilkins Philadelphia 1999 2069 2 vols
14. M. Heinkelein M. Schmidt N. Fischer A. Moebes D. Lindemann J. Enssle A. Rethwilm Characterization of a cis -acting sequence in the Pol region required to transfer human foamy virus vectors J. Virol. 72 1998 6307 6314
15. M. Heinkelein M. Dressler G. Jarmy M. Rammling H. Imrich J. Thurow D. Lindemann A. Rethwilm Improved primate foamy virus vectors and packaging constructs J. Virol. 76 2002 3774 3783
16. T. Heyman M. Wilhelm F.X. Wilhelm The central PPT of the yeast retrotransposon Ty1 is not essential for transposition J. Mol. Biol. 331 2003 315 320
17. O. Hungnes E. Tjotta B. Grinde Mutations in the central polypurine tract of HIV-1 result in delayed replication Virology 190 1992 440 442
18. J.J. Kupiec J. Tobaly-Tapiero M. Canivet M. Santillana-Hayat R.M. Flugel J. Peries R. Emanoil-Ravier Evidence for a gapped linear duplex DNA intermediate in the replicative cycle of human and simian spumaviruses Nucleic Acids Res. 16 1988 9557 9565
19. A. Limón N. Nakajima R. Lu H.Z. Ghory A. Engelman Wild-type levels of nuclear localization and human immunodeficiency virus type 1 replication in the absence of the central DNA flap J. Virol. 76 2002 12078 12086
20. M. Linial Foamy viruses D.M. Kniepe P.M. Howley 5th Ed. Fields Virology vol. 2 2007 Lippincot Williams & Wilkins Philadelphia 2245 2262 2 vols
21. I. Mannigel A. Stange H. Zentgraf D. Lindemann Correct capsid assembly mediated by a conserved YXXLGL motif in prototypie foamy virus gag is essential for infectivity and reverse transcription of the viral genome J. Virol. 81 2007 3317 3326
22. C.D. Meiering K.E. Comstock M.L. Linial Multiple integrations of human foamy virus in persistently infected human erythroleukemia cells J. Virol. 74 2000 1718 1726
23. L.R. Miles B.E. Agresta M.B. Khan S. Tang J.G. Levin M.D. Powell Effect of polypurine tract (PPT) mutations on human immunodeficiency virus type 1 replication: a virus with a completely randomized PPT retains low infectivity J. Virol. 79 2005 6859 6867
24. A. Moebes J. Enssle P.D. Bieniasz M. Heinkelein D. Lindemann M. Bock M.O. McClure A. Rethwilm Human foamy virus reverse transcription that occurs late in the viral replication cycle J. Virol. 71 1997 7305 7311
25. R.J. Noad N.S. Al-Kaff D.S. Turner S.N. Covey Analysis of polypurine tract-associated DNA plus-strand priming in vivo utilizing a plant pararetroviral vector carrying redundant ectopic priming elements J. Biol. Chem. 273 1998 32568 32575
26. T. Nora C. Charpentier O. Tenaillon C. Hoede F. Clavel A.J. Hance Contribution of recombination to the evolution of human immunodeficiency viruses expressing resistance to antiretroviral treatment J. Virol. 81 2007 7620 7628
27. G. Patton O. Erlwein M.O. McClure Cell-cycle dependence of foamy virus vectors J. Gen. Virol. 85 2004 2925 2930
28. K. Peters T. Wiktorowicz M. Heinkelein A. Rethwilm RNA and protein requirements for incorporation of the pol protein into foamy virus particles J. Virol. 79 2005 7005 7013
29. J.W. Rausch S.F. Le Grice 'Binding, bending and bonding': polypurine tract-primed initiation of plus-strand DNA synthesis in human immunodeficiency virus Int. J. Biochem. Cell. Biol. 36 2004 1752 1766
30. A. Rethwilm The replication strategy of foamy viruses Curr. Top. Microbiol. Immunol. 277 2003 1 26
31. A. Rethwilm Foamy viruses B.W.J. Mahy V. ter Meulen 10th Ed. Topley & Wilson's Microbiology and Microbial Infections—Virology vol. 2 2005 Hodder Arnold London 1304 1321
32. A. Rethwilm Foamy virus vectors: an awaited alternative to gamma retroviral and lentiviral vectors Curr. Gene Ther. 7 2007 261 271
33. J. Roy W. Rudolph T. Juretzek K. Gärtner M. Bock O. Herchenröder D. Lindemann M. Heinkelein A. Rethwilm Feline foamy virus genome and replication strategy J. Virol. 77 2003 11324 11331
34. M. Schmidt A. Rethwilm Replicating foamy virus-based vectors directing high level expression of foreign genes Virology 210 1995 167 178
35. M. Schweizer R. Renne D. Neumann-Haefelin Structural analysis of proviral DNA in simian foamy virus (LK-3)-infected cells Arch. Virol. 109 1989 103 114
36. D. Shriner A.G. Rodrigo D.C. Nickle J.I. Mullins Pervasive genomic recombination of HIV-1 in vivo Genetics 167 2004 1573 1583
37. W.M. Switzer M. Salemi V. Shanmugam F. Gao M.E. Cong C. Kuiken V. Bhullar B.E. Beer D. Vallet A. Gautier-Hion Z. Tooze F. Villinger E.C. Holmes W. Heneine Ancient co-speciation of simian foamy viruses and primates Nature 434 2005 376 380
38. J.M. Taylor A. Cywinski J.K. Smith Discontinuities in the DNA synthesized by an avian retrovirus J. Virol. 48 1983 654 659
39. L. Thümer A. Rethwilm E.C. Holmes J. Bodem Complete nucleotide sequence of a New World simian foamy virus Virology 369 2007 191 197
40. J. Tobaly-Tapiero J.J. Kupiec M. Santillana-Hayat M. Canivet J. Peries R. Emanoil-Ravier Further characterization of the gapped DNA intermediates of human spumavirus: evidence for a dual initiation of plus-strand DNA synthesis J. Gen. Virol. 72 1991 605 608
41. G. Trobridge D.W. Russell Cell cycle requirements for transduction by foamy virus vectors compared to those of oncovirus and lentivirus vectors J. Virol. 78 2004 2327 2335
42. T. Wei Hsu J.M. Taylor Single-stranded regions on unintegrated avian retrovirus DNA J. Virol. 44 1982 47 53
43. T. Whitwam M. Peretz E. Poeschla Identification of a central DNA flap in feline immunodeficiency virus J. Virol. 75 2001 9407 9414
44. H. Wodrich J. Bohne E. Gumz R. Welker H.G. Krausslich A new RNA element located in the coding region of a murine endogenous retrovirus can functionally replace the Rev/Rev-responsive element system in human immunodeficiency virus type 1 Gag expression J. Virol. 75 2001 10670 10682
45. S.F. Yu M.D. Sullivan M.L. Linial Evidence that the human foamy virus genome is DNA J. Virol. 73 1999 1565 1572
46. V. Zennou C. Petit D. Guetard U. Nerhbass L. Montagnier P. Charneau HIV-1 genome nuclear import is mediated by a central DNA flap Cell 101 2000 173 185