DNA barcoding is not enough: Mismatch of taxonomy and genealogy in New Zealand grasshoppers (Orthoptera: Acrididae)

Cladistics

Volumn 24, Issue 2, 2008, Pages 240-254

  Trewick, Steven A ^a  

^a MASSEY UNIVERSITY   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GRASSHOPPER; MORPHOLOGY; SPECIATION (BIOLOGY); SPECIES DIVERSITY; TAXONOMY;

AUSTRALASIA; NEW ZEALAND;

ACRIDIDAE; ORTHOPTERA;

EID: 40549133267     PISSN: 07483007     EISSN: 10960031     Source Type: Journal    
DOI: 10.1111/j.1096-0031.2007.00174.x     Document Type: Article

References (93)

1. Arensburger, P., Simon, C., Hosinger, K., 2004. Evolution and phylogeny of the New Zealand cicada genus Kikihia Dugdale (Homoptera: Auchenorryncha: Cidadidae) with special references to the origin of the Kermadec and Norfolk Islands species. JBiogeog. 31, 1 15.
2. Avise, J.C., 2000. Phylogeography: the History and Formation of Species. Harvard University Press, Cambridge, MA.
3. Avise, J.C., 2004. Molecular Markers, Natural History and Evolution, 2nd edn. Sinauer Associates, Sunderland, MA.
4. Batt, G.E., Braun, J., Kohn, B.P., McDougal, I., 2000. Thermochronological analysis of the dynamics of the Southern Alps, New Zealand. Geol. Soc. Am. Bull. 1, 250 266.
5. Bigelow, R.S., 1967. The Grasshoppers of New Zealand. University of Canterbury, Christchurch, New Zealand.
6. Brower, A.V.Z., 1994. Rapid morphological radiation and convergence among races of the butterfly Helioconius erato inferred from patterns of mitochondrial DNA evolution. Proc. Natl Acad. Sci. USA 91, 6491 6495.
7. Buckley, T.R., Simon, C., Chambers, G.K., 2001. Phylogeography of the New Zealand cicada Maoricada campbelli based on mitochondrial DNA sequences: ancient clades associated with Cenozoic environmental change. Evolution 55, 1395 1407.
8. Burrows, C.J., 1965. Some discontinuous distributions of plants within New Zealand and their ecological significance. Part II: Disjunctions between Otago-Southland and Nelson-Marlborough and related distribution patterns. Tuatara 13, 9 29.
9. Chinn, W.G., Gemmell, N.J., 2004. Phylogeographic pattern and history of the endemic New Zealand cockroach genus Celatoblatta (Blattidae). Mol. Ecol. 13, 1507 1518.
10. Clark, G.R., Petchey, P., McGlone, M.S., Bristow, P., 1996. Faunal and floral remains from Earnscleugh Cave, Central Otago, New Zealand. JR. Soc. N. Z. 26, 363 380.
11. Darwin, C., 1859. The Origin of Species by Means of Natural Selection, 1st edn. John Murray, London.
12. Dasmahapatra, K.K., Mallet, J., 2006. DNA barcodes: recent successes and future prospects. Heredity 97, 254 255.
13. Daugherty, C.H., Gibbs, G.W., Hitchmough, R.A., 1993. Mega-island or micro-continent? New Zealand and its fauna. Trends Ecol. Evol. 8, 437 442.
14. DeSalle, R., Egan, M.G., Siddall, M., 2005. The unholy trinity: taxonomy, species delimination and DNA barcoding. Phil. Trans. R. Soc. Lond., Ser. B. Biol. Sci. 360, 1905 1916.
15. Dopman, E.B., Sword, G.A., Hillis, D.M., 2002. The importance of the ontogenetic niche in resource-associated divergence: evidence from a generalist grasshopper. Evolution 56, 731 740.
16. Doyle, J.J., 1997. Trees within trees. Genes and species, molecules and morphology. Syst. Biol. 46, 537 553.
17. Dumbleton, L.J., 1969. Pleistocene climates and insect distributions. N. Z. Entomol. 4, 3 23.
18. Ebach, M.C., Holdrege, C., 2005. DNA barcoding is no substitute for taxonomy. Nature 434, 697.
19. Emerson, B.C., Wallis, G.P., 1994. Species status and population genetic structure of the flightless chafer beetles Prodontria modesta and P. bicolorata (Coleoptera; Scarabaeidae) from South Island, New Zealand. Mol. Ecol. 3, 339 345.
20. Fleischer, R.C., McIntosh, C.E., Tarr, C.I., 1998. Evolution on a volcanic conveyor belt: using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates. Mol. Ecol. 7, 533 545.
21. Fleming, C.A., 1963. The age of the alpine biota. Proc. N. Z. Ecol. Soc. 10, 15 18.
22. Fleming, C.A., 1979. The Geological History of New Zealand and its Life. University Press, Auckland.
23. Funk, D.J., Omland, K.E., 2003. Species-level paraphyly and polyphyly: frequency, causes, consequences, with insights from animal mitochondrial DNA. Annu. Rev. Ecol. Syst. 34, 397 423.
24. Funk, D.J., Futuyma, D.J., Ort, Ä.G., Meyer, A., 1995. A history of host associations and evolutionary diversification for Ophraella (Coleoptera: Chrysomelidae): new evidence from mitochondrial DNA. Evolution 49, 1008 1017.
25. Heald, W.F., 1951. Sky islands in Arizona. Nat. Hist. 60, 56 63.
26. Hebert, P.D.N., Gregory, T.R., 2005. The promise of DNA barcoding for taxonomy. Syst. Biol. 54, 852 859.
27. Hebert, P.D.N., Cywinska, A., Ball, S.L., deWaard, J.R., 2003. Biological identifications through DNA barcodes. Proc. R. Soc. Lond., Ser. B. Biol. Sci. 70, 313 321.
28. Hebert, P.D.N., Penton, E.H., Burns, J., Janzen, D.J., Hallwachs, W., 2004a. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly, Astraptes fulgerator. Proc. Natl Acad. Sci. USA 101, 14812 14817.
29. Hebert, P.D.N., Stoeckle, M.Y., Zemlak, T.S., Francis, C.M., 2004b. Identification of birds through DNA barcodes. PLoS Biol. 2, 1657 1663.
30. Heenan, P.B., Mitchell, A.D., 2003. Phylogeny, biogeography and adaptive radiation of Pachycladon (Brassicaceae) in the mountains of South Island, New Zealand. JBiogeog. 30, 1737 1749.
31. Hillis, D.M., 1987. Molecular versus morphological approaches to systematics. Ann. Rev. Ecol. Syst. 18, 23 42.
32. Hutton, F.W., 1897. The grasshoppers and locusts of New Zealand and the Kermadec Islands. Proc. N. Z. Inst. 30, 135 150.
33. Hutton, F.W., 1898. Notes on the New Zealand Acrididae. Proc. N. Z. Inst. 31, 44 50.
34. Jamieson, C.D., 1999a. A new species of Sigaus from Alexandra, New Zealand (Orthoptera: Acrididae). N. Z. J. Zool. 26, 43 48.
35. Juan, C., Oromi, P., Hewitt, G.M., 1995. Mitochondrial DNA phylogeny and sequential colonization of Canary Islands by darkling beetles of the genus Pimelia (Tenebrionidae). Proc. R. Soc. Lond., Ser. B. Biol. Sci. 162, 173 180.
36. Knowles, L.L., 2000. Tests of Pleistocene speciation in montane grasshoppers (genus Melanoplus) from the sky islands of western North America. Evolution 54, 1337 1348.
37. Lockhart, P.J., McLenachan, P.A., Havell, D., Glenny, D., Huson, D., Jensen, U., 2001. Phylogeny, radiation, and transoceanic dispersal of New Zealand alpine buttercups: molecular evidence under split decomposition. Ann. Miss. Bot. Gard. 88, 458 477.
38. Lunt, D.H., Zhang, D.-X., Szymura, J.M., Hewitt, G.M., 1996. The insect cytochrome oxidase I gene: evolutionary patterns and conserved primers for phylogenetic studies. Insect Mol. Biol. 5, 153 165.
39. Maddison, W.P., Maddison, D.R., 1997. MacClade: Analysis of Phylogeny and Character Evolution, V3.07. Sinauer Associates, Sunderland, MA.
40. Mallet, J., 2001. Subspecies, semispecies. In: Levin, S. (Ed Encyclopedia of Biodiversity, Vol. 5, pp. 523 526. Academic Press, FL.
41. Mallet, J., Willmott, K., 2003. Taxonomy: renaissance or tower of Babel? Trends Ecol. Evol. 18, 57 59.
42. Mark, A.F., Adams, N.M., 1995. New Zealand Alpine Plants (Revised and Updated Edn). Godwit Publishing Ltd, Auckland.
43. McGlone, M.S., 1985. Plant biogeography and the late Cenozoic history of New Zealand. N. Z. J. Bot. 23, 723 749.
44. McGlone, M.S., 2001. The origin of the indigenous grasslands of southeastern South Island in relation to pre-human woody ecosystems. N. Z. J. Ecol. 25, 1 15.
45. McGlone, M.S., Mark, A.F., Bell, D., 1995. Late Pleistocene and Holocene vegetation history, Central Otago, South Island, New Zealand. JR. Soc. N. Z. 25, 1 22.
46. McGlone, M.S., Duncan, R.P., Heenan, P.B., 2001. Endemism, species selection and the origin and distribution of the vascular plant flora of New Zealand. JBiogeog. 28, 199 216.
47. McGlone, M.S., Wardle, P., Worthy, T., 2003. Environmental change since the last glaciation. In: Darby, J., Fordyce, R.E., Mark, A., Probert, K., Townsend, C. (Eds), The Natural History of Southern New Zealand. Otago University Press, Dunedin, New Zealand, pp. 105 130.
48. Meier, R., Shiyang, K., Vaidya, G., Ng, P.K.L., 2006. DNA barcoding and taxonomy in Diptera: a tale of high intrapecific variability and low identification success. Syst. Biol. 55, 715 728.
49. Meyer, C., Paulay, G., 2005. DNA barcoding error rates based on comprehensive sampling. PLos Biol. 3, 2229 2238.
50. Morgan-Richards, M., Gibbs, G.W., 1996. Colour, allozyme and karyotype variation show little concordance in the New Zealand giant scree weta Deinacrida connectens (Orthoptera: Stenopelmatidae). Hereditas 125, 265 276.
51. Moritz, C., 1994. Defining 'Evolutionarily Significant Units' for conservation. Trends Ecol. Evol. 9, 373 375.
52. Moritz, C., Cicero, C., 2004. DNA barcoding: promise and pitfalls. PLos Biol. 2, 1529 1531.
53. Morris, S.J., 2002. Identification Guide to Grasshoppers (Orthoptera: Acrididae) in Central Otago and Mackenzie Country. DOC Science Internal Series 26. Department of Conservation, Wellington, New Zealand.
54. Morris, S.J., 2003a. Two new species of Sigaus from Fiordland, New Zealand (Orthoptera: Acrididae). N. Z. Entomol. 26, 65 74.
55. Morris, S.J., 2003b. Distribution and Taxonomic Status of New Zealand Endangered Grasshoppers (Orthoptera: Acrididae). Unpublished Internal Department of Conservation Report, Wellington, New Zealand.
56. Posada, D., Crandall, D.K.A., 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817 818.
57. Rambaut, A., 1996. Se-Al: sequence alignment editor. Available from http://evolve.200.ox.ac.uk/.
58. Raven, P.H., 1973. Evolution of subalpine and alpine plant groups in New Zealand. N. Z. J. Bot. 11, 177 200.
59. Ribera, I., Vogler, A.P., 2004. Speciation of Iberian diving beetles in Pleistocene refugia (Coleoptera, Dytiscidae). Mol. Ecol. 13, 179 193.
60. Rubinoff, D., Cameron, S., Will, K., 2006. A genomic perspective on the shortcomings of mitochondrial DNA for ''''Barcoding" identification. Heredity 97, 581 594.
61. Saiki, R.K., Gelfand, D.H., Stoffel, S., Scharf, S.J., Higuchi, R., Horn, G.T., Mullis, K.B., Erlich, H.A., 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239, 487 491.
62. Schindel, D.E., Miller, S.E., 2005. DNA barcoding a useful tool for taxonomists. Nature 435, 17.
63. Shaw, K.L., 1996. Sequential radiations and patterns of speciation in the Hawaiian cricket genus Laupala inferred from DNA sequences. Evolution 50, 237 255.
64. Simon, C., Frati, F., Beckenbach, A., Crespi, B., Liu, H., Flook, P., 1994. Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87, 651 701.
65. Sinclair, B.J., Worland, M.R., Wharton, D.A., 1999. Ice nucleation and freezing tolerance in New Zealand alpine and lowland weta, Hemideina spp. (Orthoptera: Stenopelmatidae). Physiol. Entomol. 24, 56 63.
66. Stevens, G.R., 1981. New Zealand Adrift. The Theory of Continental Drift in a New Zealand Setting, 2nd edn. Reed, Wellington, New Zealand.
67. Sunnucks, P., Hales, D.F., 1996. Numerous transposed sequences of mitochondrial cytochrome oxidase I-II in aphids of the genus Sitobion (Hemiptera: Aphididae). Mol. Bio. Evol. 13, 510 524.
68. Sunnucks, P., Wilson, A.C.C., Beheregaray, L.B., Zenger, K., French, J., Taylor, A.C., 2000. SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology. Mol. Ecol. 9, 1699 1770.
69. Swofford, D.L., 2002. PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods), Version 4. Sinauer Associates, Sunderland, MA.
70. Szymura, J.M., Lunt, D.H., Hewitt, G.M., 1996. The sequence and structure of the meadow grasshopper (Chorthippus parallelus) mitochondrial srRNA, ND2, COI, COII, ATPase8 and 9 tRNA genes. Insect Mol. Biol. 5, 127 139.
71. Talbot, S.L., Shields, G.F., 1996. Phylogeography of brown bears (Ursus arctos) of Alaska and paraphyly within the Ursidae. Mol. Phylogenet. Evol. 5, 477 494.
72. Tautz, D., Acrtander, P., Minelli, A., Thomas, R.H., Vogler, A.P., 2003. A plea for DNA taxonomy. Trends Ecol. Evol. 18, 70 74.
73. Trewick, S.A., 2001a. Scree weta phylogeography: surviving glaciation and implications for Pleistocene biogeography in New Zealand. N. Z. J. Zool. 28, 291 298.
74. Trewick, S.A., 2001b. Identity of an endangered grasshopper (Acrididae: Brachaspis): taxonomy, molecules and conservation. Conserv. Genet. 2, 233 243.
75. Trewick, S.A., Morgan-Richards, M., 2005. After the deluge: mitochondrial DNA indicates Miocene radiation and Pliocene adaptation of tree and giant weta (Orthoptera: Anostostomatidae). JBiogeog. 32, 295 309.
76. Trewick, S.A., Wallis, G.P., 2001. Bridging the "beech-gap": New Zealand invertebrate phylogeography impicates Pleistocene glaciation and Pliocene isolation. Evolution 55, 2170 2180.
77. Trewick, S.A., Wallis, G.P., Morgan-Richards, M., 2000. Phylogeographic pattern correlates with Pliocene mountain building in the alpine scree weta (Orthoptera, Anostostomatidae). Mol. Ecol. 9, 657 666.
78. Trewick, S.A., Paterson, A.M., Campbell, H.J., 2007. Hello New Zealand. JBiogeog. 34, 1 6.
79. Wagstaff, S.J., Garnock-Jones, P.J., 1999. Whipcord Hebes - systematics, distribution, ecology and evolution. N. Z. J. Bot. 37, 17 39.
80. Wakeley, J., 2004. Coalescent Theory: an Introduction. Roberts & Company, Greenwood Village, CO, USA.
81. Wallis, G., 2001. Taxonomic Status of the Chafer Beetles Prodontria modesta and P. bicolorata. DOC Science Internal Series 10. Department of Conservation, Wellington, New Zealand.
82. Wallis, G.P., Trewick, S.A., 2001. Finding fault with vicariance: a critique of Heads (1998). Syst. Biol. 50, 602 609.
83. Wardle, P., 1963. Evolution and distribution of the New Zealand flora, as affected by Quaternary climates. N. Z. J. Bot. 1, 3 17.
84. Wardle, P., 2001. Distribution of native forest fires in the upper Clutha district, Otago, New Zealand. N. Z. J. Bot. 39, 523 542.
85. Westman, M., Ritchie, J.M., 1984. The taxonomy, distribution and origins of two species of Phaulacridium (Orthoptera: Acrididae) in the South Island of New Zealand. Biol. J. Linn. Soc. 21, 283 298.
86. Wheeler, Q.D., 2004. Taxonomic triage and the poverty of phylogeny. Philos. Trans. R. Soc. Lond., Series B. Biol. Sci. 359, 571 583.
87. Whitehouse, I.E., Pearce, A.J., 1992. Shaping the mountains of New Zealand. In: Soons, J.M., Selby, M.J. (Eds), Landforms of New Zealand, 2nd edn. Longman Paul, Auckland, pp. 144 160.
88. Will, K.W., Rubinoff, D., 2004. Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification. Cladistics 20, 47 55.
89. Will, K.W., Mishler, B.D., Wheeler, Q.D., 2005. The perils of DNA barcoding and the need for integrative taxonomy. Syst. Biol. 54, 844 851.
90. Wilson, E.O., Brown, W.L., 1953. The subspecies concept and its taxonomic application. Syst. Zool. 2, 97 111.
91. Wilson, A.C., Cann, R.L., Carr, S.M., George, M., Jr., Gyllensten, U.B., Helm-Bychowski, K., Higuchi, R.G., Palumbi, S.R., Prager, E.M., Sage, R.D., Stoneking, M., 1985. Mitochondrial DNA and two perspectives on evolutionary genetics. Biol. J. Linn. Soc. 26, 375 400.
92. Winkworth, R.C., Grau, J., Roberton, A.W., Lockhart, P.J., 2002. The origins and evolution of the genus Myosotis L. (Boraginaceae). Mol. Phylogenet. Evol, 24, 180 193.
93. Zhang, D.-Z., Hewitt, G.M., 1996. Assessment of the universality and utility of a set of conserved mitochondrial COI primers in insects. Insect Mol. Biol. 6, 143 150.