-
1
-
-
0030633568
-
RecA protein: Structure, function, and role in recombinational DNA repair
-
Roca AI, Cox MM: RecA protein: structure, function, and role in recombinational DNA repair. Prog Nucleic Acid Res Mol Biol 1997, 56:129-223
-
(1997)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.56
, pp. 129-223
-
-
Roca, A.I.1
Cox, M.M.2
-
2
-
-
0001865832
-
DNA strand exchange proteins: A biochemical and physical comparison
-
Bianco PR, Tracy RB, Kowalczykowski SC: DNA strand exchange proteins: a biochemical and physical comparison. Front Biosci 1998, 3:D570-603
-
(1998)
Front Biosci.
, vol.3
-
-
Bianco, P.R.1
Tracy, R.B.2
Kowalczykowski, S.C.3
-
3
-
-
0032715175
-
Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda
-
Kuzminov A: Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol Mol Biol Rev 1999, 63:751-813
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 751-813
-
-
Kuzminov, A.1
-
4
-
-
0032524617
-
DNA strand invasion promoted by Escherichia coli RecT protein
-
Noirot P, Kolodner RD: DNA strand invasion promoted by Escherichia coli RecT protein. J Biol Chem 1998, 273: 2274-12280
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 12274-12280
-
-
Noirot, P.1
Kolodner, R.D.2
-
5
-
-
0028102267
-
Biochemistry of homologous recombination in Escherichia coli
-
Kowalczykowski SC, Dixon DA, Eggleston AK, Lauder SD, Rehrauer WM: Biochemistry of homologous recombination in Escherichia coli. Microbiol Rev 1994, 58:401-465
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 401-465
-
-
Kowalczykowski, S.C.1
Dixon, D.A.2
Eggleston, A.K.3
Lauder, S.D.4
Rehrauer, W.M.5
-
6
-
-
0038799991
-
Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae
-
Paques F, Haber JE: Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol Mol Biol Rev 1999, 63:349-404
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 349-404
-
-
Paques, F.1
Haber, J.E.2
-
7
-
-
0035824602
-
Structure and function of the Escherichia coli RecE protein, a member of the RecB nuclease domain family
-
Chang HW, Julin DA: Structure and function of the Escherichia coli RecE protein, a member of the RecB nuclease domain family. J Biol Chem 2001, 276:46004-46010
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 46004-46010
-
-
Chang, H.W.1
Julin, D.A.2
-
8
-
-
0014852123
-
Biochemical and genetic studies of recombination proficiency in Escherichia coli. II. Rec+ revertants caused by indirect suppression of recmutations
-
Barbour SD, Nagaishi H, Templin A, dark AJ: Biochemical and genetic studies of recombination proficiency in Escherichia coli. II. Rec+ revertants caused by indirect suppression of recmutations. Proc Natl Acad Sci U SA 1970, 67:128-135
-
(1970)
Proc. Natl. Acad. Sci. USA
, vol.67
, pp. 128-135
-
-
Barbour, S.D.1
Nagaishi, H.2
Templin, A.3
Dark, A.J.4
-
9
-
-
0015040186
-
Genetic recombination in Escherichia coli: The role of exonuclease I
-
Kushner SR, Nagaishi H, Templin A, dark AJ: Genetic recombination in Escherichia coli: the role of exonuclease I. Proc Natl Acad Sci USA 1971, 68:824-827
-
(1971)
Proc. Natl. Acad. Sci. USA
, vol.68
, pp. 824-827
-
-
Kushner, S.R.1
Nagaishi, H.2
Templin, A.3
Dark, A.J.4
-
10
-
-
0028233078
-
Homologous pairing proteins encoded by the Escherichia coli recE and recT genes
-
Kolodner R, Hall SD, Luisi-DeLuca C: Homologous pairing proteins encoded by the Escherichia coli recE and recT genes. Mol Microbiol 1994, 11:23-30
-
(1994)
Mol. Microbiol.
, vol.11
, pp. 23-30
-
-
Kolodner, R.1
Hall, S.D.2
Luisi-DeLuca, C.3
-
11
-
-
0027391504
-
Identification and characterization of the Escherichia coli RecT protein, a protein encoded by the recE region that promotes renaturation of homologous single-stranded DNA
-
Hall SD, Kane MF, Kolodner RD: Identification and characterization of the Escherichia coli RecT protein, a protein encoded by the recE region that promotes renaturation of homologous single-stranded DNA. J Bacteriol 1993, 175:277-287
-
(1993)
J. Bacteriol.
, vol.175
, pp. 277-287
-
-
Hall, S.D.1
Kane, M.F.2
Kolodner, R.D.3
-
12
-
-
0028343501
-
Homologous pairing and strand exchange promoted by the Escherichia coli RecT protein
-
Hall SD, Kolodner RD: Homologous pairing and strand exchange promoted by the Escherichia coli RecT protein. Proc Natl Acad Sci USA 1994, 91:3205-3209
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 3205-3209
-
-
Hall, S.D.1
Kolodner, R.D.2
-
13
-
-
0029744334
-
DNA strand annealing is promoted by the yeast Rad52 protein
-
Mortensen UH, Bendixen C, Sunjevaric I, Rothstein R: DNA strand annealing is promoted by the yeast Rad52 protein. Proc Natl Acad Sci USA 1996, 93:10729-10734
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 10729-10734
-
-
Mortensen, U.H.1
Bendixen, C.2
Sunjevaric, I.3
Rothstein, R.4
-
14
-
-
0033551177
-
Rings and filaments of beta protein from bacteriophage lambda suggest a superfamily of recombination proteins
-
Passy SI, Yu X, Li Z, Radding CM, Egelman EH: Rings and filaments of beta protein from bacteriophage lambda suggest a superfamily of recombination proteins. Proc Natl Acad Sci U S A 1999, 96: 279-4284
-
(1999)
Proc. Natl. Acad. Sci. U S A
, vol.96
, pp. 4279-4284
-
-
Passy, S.I.1
Yu, X.2
Li, Z.3
Radding, C.M.4
Egelman, E.H.5
-
15
-
-
0029563182
-
Electron microscopic visualization of RecT protein and its complexes with DNA
-
Thresher RJ, Makhov AM, Hall SD, Kolodner R, Griffith JD: Electron microscopic visualization of RecT protein and its complexes with DNA. J Mol Biol 1995, 254:364-371
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 364-371
-
-
Thresher, R.J.1
Makhov, A.M.2
Hall, S.D.3
Kolodner, R.4
Griffith, J.D.5
-
16
-
-
0031902872
-
Rad52 forms ring structures and co-operates with RPA in single-strand DNA annealing
-
Shinohara A, Shinohara M, Ohta T, Matsuda S, Ogawa T: Rad52 forms ring structures and co-operates with RPA in single-strand DNA annealing. Genes Cells 1998, 3:145-156
-
(1998)
Genes Cells
, vol.3
, pp. 145-156
-
-
Shinohara, A.1
Shinohara, M.2
Ohta, T.3
Matsuda, S.4
Ogawa, T.5
-
17
-
-
0021112867
-
Domain structure and quaternary organization of the bacteriophage P22 Erf protein
-
Poteete AR, Sauer RT, Hendrix RW: Domain structure and quaternary organization of the bacteriophage P22 Erf protein. J Mol Biol 1983, 171:401-418
-
(1983)
J. Mol. Biol.
, vol.171
, pp. 401-418
-
-
Poteete, A.R.1
Sauer, R.T.2
Hendrix, R.W.3
-
18
-
-
0033919431
-
The relapsing fever spirochete Borrelia hermsii contains multiple, antigen-encoding circular plasmids that are homologous to the cp32 plasmids of Lyme disease spirochetes
-
Stevenson B, Porcella SF, Oie KL, Fitzpatrick CA, Raffel SJ, Lubke L, Schrumpf ME, Schwan TG: The relapsing fever spirochete Borrelia hermsii contains multiple, antigen-encoding circular plasmids that are homologous to the cp32 plasmids of Lyme disease spirochetes. Infect Immun 2000, 68:3900-3908
-
(2000)
Infect. Immun.
, vol.68
, pp. 3900-3908
-
-
Stevenson, B.1
Porcella, S.F.2
Oie, K.L.3
Fitzpatrick, C.A.4
Raffel, S.J.5
Lubke, L.6
Schrumpf, M.E.7
Schwan, T.G.8
-
19
-
-
0027508079
-
Characterization and sequence of a 33-kDa enterohemolysin (Ehly 1) - Associated protein in Escherichia coli
-
Stroeher UH, Bode L, Beutin L, Manning PA: Characterization and sequence of a 33-kDa enterohemolysin (Ehly 1) - associated protein in Escherichia coli. Gene 1993, 132: 9-94
-
(1993)
Gene
, vol.132
, pp. 89-94
-
-
Stroeher, U.H.1
Bode, L.2
Beutin, L.3
Manning, P.A.4
-
20
-
-
0019854161
-
Beta protein of bacteriophage lambda promotes renaturation of DNA
-
Kmiec E, Holloman WK: Beta protein of bacteriophage lambda promotes renaturation of DNA. J Biol Chem 1981, 256: 2636-12639
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 12636-12639
-
-
Kmiec, E.1
Holloman, W.K.2
-
21
-
-
0014966697
-
A recombination function essential to the growth of bacteriophage P22
-
Botstein D, Matz MJ: A recombination function essential to the growth of bacteriophage P22. J Mol Biol 1970, 54: 17-440
-
(1970)
J. Mol. Biol.
, vol.54
, pp. 417-440
-
-
Botstein, D.1
Matz, M.J.2
-
22
-
-
0017347629
-
Recombinational circularization of Salmonella phage P22 DNA
-
Weaver S, Levine M: Recombinational circularization of Salmonella phage P22 DNA. Virology 1977, 76:29-38
-
(1977)
Virology
, vol.76
, pp. 29-38
-
-
Weaver, S.1
Levine, M.2
-
23
-
-
0020083771
-
Location and sequence of the erf gene of phage P22
-
Poteete AR: Location and sequence of the erf gene of phage P22. Virology 1982, 119:422-429
-
(1982)
Virology
, vol.119
, pp. 422-429
-
-
Poteete, A.R.1
-
24
-
-
0021355708
-
Lambda red-dependent growth and recombination of phage P22
-
Poteete AR, Fenton AC: Lambda red-dependent growth and recombination of phage P22. Virology 1984, 134:161-167
-
(1984)
Virology
, vol.134
, pp. 161-167
-
-
Poteete, A.R.1
Fenton, A.C.2
-
25
-
-
0027282018
-
Efficient double-strand break-stimulated recombination promoted by the general recombination systems of phages lambda and P22
-
Poteete AR, Fenton AC: Efficient double-strand break-stimulated recombination promoted by the general recombination systems of phages lambda and P22. Genetics 1993, 134: 013-1021
-
(1993)
Genetics
, vol.134
, pp. 1013-1021
-
-
Poteete, A.R.1
Fenton, A.C.2
-
26
-
-
0034704903
-
The human Rad52 protein exists as a heptameric ring
-
Stasiak AZ, Larquet E, Stasiak A, Muller S, Engel A, Van Dyck E, West SC, Egelman EH: The human Rad52 protein exists as a heptameric ring. Curr Biol 2000, 10:337-340
-
(2000)
Curr. Biol.
, vol.10
, pp. 337-340
-
-
Stasiak, A.Z.1
Larquet, E.2
Stasiak, A.3
Muller, S.4
Engel, A.5
Van Dyck, E.6
West, S.C.7
Egelman, E.H.8
-
27
-
-
0034661711
-
Common fold in helix-hairpin-helix proteins
-
Shao X, Grishin NV: Common fold in helix-hairpin-helix proteins. Nucleic Acids Res 2000, 28:2643-2650
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 2643-2650
-
-
Shao, X.1
Grishin, N.V.2
-
28
-
-
0029929070
-
The helix-hairpin-helix DNA-binding motif: A structural basis for non-sequence-specific recognition of DNA
-
Doherty AJ, Serpell LC, Ponting CP: The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA. Nucleic Acids Res 1996, 24:2488-2497
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2488-2497
-
-
Doherty, A.J.1
Serpell, L.C.2
Ponting, C.P.3
-
29
-
-
0033105094
-
Conserved domains in DNA repair proteins and evolution of repair systems
-
Aravind L, Walker DR, Koonin EV: Conserved domains in DNA repair proteins and evolution of repair systems. Nucleic Acids Res 1999, 27:1223-1242
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1223-1242
-
-
Aravind, L.1
Walker, D.R.2
Koonin, E.V.3
-
30
-
-
0035085816
-
Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context
-
Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV: Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. Genome Res 2001, 11: 56-372
-
(2001)
Genome Res.
, vol.11
, pp. 356-372
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Kondrashov, A.S.3
Koonin, E.V.4
-
31
-
-
0033832615
-
Predicting protein function by genomic context: Quantitative evaluation and qualitative inferences
-
Huynen M, Snel B, Lathe W 3rd, Bork P: Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. Genome Res 2000, 10:1204-1210
-
(2000)
Genome Res.
, vol.10
, pp. 1204-1210
-
-
Huynen, M.1
Snel, B.2
Lathe III, W.3
Bork, P.4
-
32
-
-
0032169271
-
Conservation of gene order: A fingerprint of proteins that physically interact
-
Dandekar T, Snel B, Huynen M, Bork P: Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem Sci 1998, 23:324-328
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 324-328
-
-
Dandekar, T.1
Snel, B.2
Huynen, M.3
Bork, P.4
-
33
-
-
0034889360
-
Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system
-
Aravind L, Koonin EV: Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system. Genome Res 2001, 11:1365-1374
-
(2001)
Genome Res.
, vol.11
, pp. 1365-1374
-
-
Aravind, L.1
Koonin, E.V.2
-
34
-
-
0034664813
-
Holliday junction resolvases and related nucleases: Identification of new families, phyletic distribution and evolutionary trajectories
-
Aravind L, Makarova KS, Koonin EV: Holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories. Nucleic Acids Res 2000, 28:3417-3432
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 3417-3432
-
-
Aravind, L.1
Makarova, K.S.2
Koonin, E.V.3
-
35
-
-
0032493294
-
The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA
-
Connelly JC, Kirkham LA, Leach DR: The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA. Proc Natl Acad Sci U S A 1998, 95:7969-7974
-
(1998)
Proc. Natl. Acad. Sci. U S A
, vol.95
, pp. 7969-7974
-
-
Connelly, J.C.1
Kirkham, L.A.2
Leach, D.R.3
-
36
-
-
0033557344
-
DNA cleavage and degradation by the SbcCD protein complex from Escherichia coli
-
Connelly JC, de Leau ES, Leach DR: DNA cleavage and degradation by the SbcCD protein complex from Escherichia coli. Nucleic Acids Res 1999, 27:1039-1046
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1039-1046
-
-
Connelly, J.C.1
de Leau, E.S.2
Leach, D.R.3
-
37
-
-
0029003406
-
Primosome assembly site in Bacillus subtilis
-
Bruand C, Ehrlich SD, Janniere L: Primosome assembly site in Bacillus subtilis. Embo J 1995, 14:2642-2650
-
(1995)
Embo. J.
, vol.14
, pp. 2642-2650
-
-
Bruand, C.1
Ehrlich, S.D.2
Janniere, L.3
-
38
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25: 389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
39
-
-
0034623005
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment
-
Notredame C, Higgins DG, Heringa J: T-Coffee: A novel method for fast and accurate multiple sequence alignment. J Mol Biol 2000, 302:205-217
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
40
-
-
0031577260
-
Protein fold recognition by prediction-based threading
-
Rost B, Schneider R, Sander C: Protein fold recognition by prediction-based threading. J Mol Biol 1997, 270:471-480
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 471-480
-
-
Rost, B.1
Schneider, R.2
Sander, C.3
-
41
-
-
0028158628
-
PHD - An automatic mail server for protein secondary structure prediction
-
Rost B, Sander C, Schneider R: PHD - an automatic mail server for protein secondary structure prediction. Comput Appl Biosci 1994, 10:53-60
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 53-60
-
-
Rost, B.1
Sander, C.2
Schneider, R.3
-
42
-
-
0032420333
-
JPred: A consensus secondary structure prediction server
-
Cuff JA, Clamp ME, Siddiqui AS, Finlay M, Barton GJ: JPred: a consensus secondary structure prediction server. Bioinformatics 1998, 14:892-3
-
(1998)
Bioinformatics
, vol.14
, pp. 892-893
-
-
Cuff, J.A.1
Clamp, M.E.2
Siddiqui, A.S.3
Finlay, M.4
Barton, G.J.5
-
43
-
-
0034595501
-
Enhanced genome annotation using structural profiles in the program 3D-PSSM
-
Kelley LA, MacCallum RM, Sternberg MJ: Enhanced genome annotation using structural profiles in the program 3D-PSSM. J Mol Biol 2000, 299:499-520
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 499-520
-
-
Kelley, L.A.1
MacCallum, R.M.2
Sternberg, M.J.3
-
44
-
-
0033654768
-
Hybrid fold recognition: Combining sequence derived properties with evolutionary information
-
Hawaii
-
Fischer D: Hybrid fold recognition: combining sequence derived properties with evolutionary information. In: Pacific Symposium on Biocomputing, Hawaii 2000, 119-130
-
(2000)
Pacific Symposium on Biocomputing
, pp. 119-130
-
-
Fischer, D.1
-
45
-
-
0348044549
-
Genome trees constructed using five different approaches suggest new major bacterial clades
-
Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV: Genome trees constructed using five different approaches suggest new major bacterial clades. BMC Evol Biol 2001, 1:8
-
(2001)
BMC Evol. Biol.
, vol.1
, pp. 8
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Grishin, N.V.3
Tatusov, R.L.4
Koonin, E.V.5
-
47
-
-
0029901637
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
-
Felsenstein J: Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Methods Enzymol 1996, 266:418-427
-
(1996)
Methods Enzymol.
, vol.266
, pp. 418-427
-
-
Felsenstein, J.1
|