Development and Characterization of Microsatellite Markers in Brassica rapa ssp. chinensis and Transferability Among Related Species

Agricultural Sciences in China

Volumn 7, Issue 1, 2008, Pages 19-31

  CUI, Xiu min ^a,b   DONG, Yu xiu ^b   HOU, Xi lin ^a   CHENG, Yan ^a   ZHANG, Jing yi ^a   JIN, Min feng ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b SHANDONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Brassica rapa; inter simple sequence repeats (ISSR); microsatellite marker; polymorphism; transferability

Indexed keywords

BRASSICA; BRASSICA RAPA; BRASSICA RAPA SUBSP. PEKINENSIS; BRASSICA RAPA SUBSP. RAPA;

EID: 39649099749     PISSN: 16712927     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1671-2927(08)60018-8     Document Type: Article

References (28)

1. Ajibade S., Weeden N., and Chite S. Inter simple sequence repeat analysis of genetic relationships in the genus Vigna. Euphytica 111 (2000) 47-55
2. Allender C., Allainguillaume J., Lynn J., and King G. Simple sequence repeats reveal uneven distribution of genetic diversity in chloroplast genomes of Brassica oleracea L. and (n=9) wild relatives. Theoretical and Applied Genetics 114 (2007) 609-618
3. Bornet B., Muller C., Paulus F., and Branchard M. Highly informative nature of inter simple sequence repeat (ISSR) sequences amplified using tri- and tetra-nucleotide primers from DNA of cauliflower (Brassica oleracea var. botrytis L.). Genome 45 (2002) 890-896
4. Dirlewanger E., Cosson P., Tavaud M., Aranzana M., Poizat C., Zanetto A., Arús P., and Laigret F. Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.). Theoretical and Applied Genetics 105 (2002) 127-138
5. Erickson L., Straus N., and Beversdorf W. Restriction patterns reveal origins of chloroplast genomes in Brassica amphiploids. Theoretical and Applied Genetics 65 (1983) 201-206
6. Gupta P., and Varshney R. The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113 (2000) 163-185
7. Kresovich S., Szewc-McFadden A., Bliek S., and McFerson J. Abundance and characterization of simple-sequence repeats (SSRs) isolated from a size-fractionated genomic library of Brassica napus L. (rapeseed). Theoretical and Applied Genetics 91 (1995) 206-211
8. Kuleung C., Baenziger P., and Dweikat I. Transferability of SSR markers among wheat, rye, and triticale. Theoretical and Applied Genetics 108 (2004) 1147-1150
9. Lagerecrantz U. Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements. Genetics 150 (1998) 1217-1228
10. Li Z., Li M., Huang R., Wu X., and Song Y. Genomic in situ hybridization (GISH) disscriminates the A, B and C genomes in Brassica allotetraploid species. Chinese Journal of Oil Crop Sciences 24 (2002) 10-14 (in Chinese).
11. Lian C., and Hogetsu T. Development of microsatellite markers in black locust (Robinia pseudoacacia) using a dualsuppression-PCR technique. Molecular Ecology Notes 2 (2002) 211-213
12. Lian C., Zhou Z., and Hogetsu T. A simple method for developing microsatellite markers using amplified fragments of inter-simple sequence repeat (ISSR). Journal of Plant Research 114 (2001) 381-385
13. Liu B., and Wendel J. Intersimple sequence repeat (ISSR) polymorphisms as a genetic marker system in cotton. Molecular Ecology Notes 1 (2001) 205-208
14. Lowe A., Moule C., Trick M., and Edwards K. Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theoretical and Applied Genetics 108 (2004) 1103-1112
15. Ozkan H., Levy A., and Feldman M. Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group. The Plant Cell 13 (2001) 1735-1747
16. Plieske J., and Struss D. Microsatellite markers for genome analysis in Brassica. I. Development in Brassica napus and abundance in Brassicaceae species. Theoretical and Applied Genetics 102 (2001) 689-694
17. Qin J., Chen W., Guan R., Jiang C., Li Y., Fu Y., Liu Z., Zhang M., Chang R., and Qiu L. Genetic contribution of foreign germplasm to elite Chinese soybean (Glycine max) cultivars revealed by SSR markers. Chinese Science Bulletin 51 (2006) 1078-1084
18. van der Schoot J., Pospišková M., Vosman B., and Smulders M. Development and characterization of microsatellite markers in black poplar (Populus nigra L.). Theoretical and Applied Genetics 101 (2000) 317-322
19. Sharopova N., McMullen M., Schultz L., Schroeder S., Sanchez-Villeda H., Gardiner J., Bergstrom D., Houchins K., Melia-Hancock S., Musket T., Duru N., Polacco M., Edwards K., Ruff T., Register J., Brouwer C., Thompson R., Velasco R., Chin E., Lee M., Woodman-Clikeman W., Long M., Liscum E., Cone K., Davis G., and Coe Jr. E. Development and mapping of SSR markers for maize. Plant Molecular Biology 48 (2002) 463-481
20. Soltis D., and Soltis P. Polyploidy: Recurrent formation and genome evolution. Trends in Ecology and Evolution 14 (1999) 348-352
21. Sourdille P., Tavaud M., Charmet G., and Bernard M. Transferability of wheat microsatellites to diploid Triticeae species carrying the A, B and D genomes. Theoretical and Applied Genetics 103 (2001) 346-352
22. Suwabe K., Iketani H., Nunome T., Kage T., and Hirai M. Isolation and characterization of microsatellies in Brassica rapa L. Theoretical and Applied Genetics 104 (2002) 1092-1098
23. Szewc-Mcfadden A., Kresovich S., Bliek S., Mitchell S., and McFerson J. Identification of polymorphic, conserved simple sequence repeats (SSRs) in cultivated Brassica species. Theoretical and Applied Genetics 93 (1996) 534-538
24. Tonguç M., and Griffiths P. Genetic relationships of Brassica vegetables determined using database derived simple sequence repeats. Euphytica 137 (2004) 193-201
25. Uzunova M., and Ecke W. Abundance, polymorphism and genetic mapping of microsatellites in oilseed rape (Brassica napus L.). Plant Breeding 118 (1999) 323-326
26. Vosman B., and Arens P. Molecular characterization of GATA/GACA microsatellite repeats in tomato. Genome 40 (1997) 25-33
27. Warwick S., Black L., and Aguinagalde I. Molecular systematics of Brassica and allied genera (Subtribe Brassicinae, Brassiceae) - chloroplast DNA variation in the genus Diplotaxis. Theoretical and Applied Genetics 83 (1992) 839-850
28. Westman A., and Kresovich S. The potential for cross-taxa simple-sequence repeat (SSR) amplification between Arabidopsis thaliana L. and crop brassicas. Theoretical and Applied Genetics 96 (1998) 272-281