Arabidopsis co-repressor complexes containing polyamine oxidase-like proteins and plant-specific histone methyltransferases

Plant Signaling and Behavior

Volumn 2, Issue 3, 2007, Pages 174-177

  Krichevsky, Alexander ^a   Kozlovsky, Stanislav V ^a   Gutgarts, Helen ^a   Citovsky, Vitaly ^a  

^a STONY BROOK UNIVERSITY   (United States)

Author keywords

Arabidopsis; Chromatin remodeling; FLC; Gene repression; Histone modification

Indexed keywords

ANIMALIA; ARABIDOPSIS; MAMMALIA;

EID: 39549111648     PISSN: 15592316     EISSN: 15592324     Source Type: Journal    
DOI: 10.4161/psb.2.3.3726     Document Type: Article

References (40)

1. Jenuwein T, Allis CD. Translating the histone code. Science 2001; 293:1074-80.
2. Kadonaga JT. Eukaryotic transcription: An interlaced network of transcription factors and chromatin-modifying machines. Cell 1998; 92:307-13.
3. Strahl BD, Allis CD. The language of covalent histone modifications. Nature 2000; 403:41-5.
4. Carrozza MJ, Utley RT, Workman JL, Cote J. The diverse functions of histone acetyltransferase complexes. Trends Genet 2003; 19:321-9.
5. Goodrich J, Tweedie S. Remembrance of things past: Chromatin remodeling in plant development. Annu Rev Cell Dev Biol 2002; 18:707-46.
6. Krichevsky A, Gutgarts H, Kozlovsky SV, Tzfira T, Sutton A, Sternglanz R, Mandel G, Citovsky V. AtCZS, an Arabidopsis C2H2 zinc finger-SET histone methyltransferase is a plant-specific chromatin modifier. Dev Biol 2007; 301, (in press).
7. Kraner SD, Chong JA, Tsay HJ, Mandel G. Silencing the type II sodium channel gene: A model for neural-specific gene regulation. Neuron 1992; 9:37-44.
8. Tapia-Ramirez J, Eggen BJ, Peral-Rubio MJ, Toledo-Aral JJ, Mandel G. A single zinc finger motif in the silencing factor REST represses the neural-specific type II sodium channel promoter. Proc Natl Acad Sci USA 1997; 94:1177-82.
9. Maue RA, Kraner D, Goodman RH, Mandel G. Neuron-specific expression of the rat brain type II sodium channel gene is directed by upstream regulatory elements. Neuron 1990; 4:233-1.
10. Ballas N, Battaglioli E, Atouf F, Andres ME, Chenoweth J, Anderson ME, Burger C, Moniwa M, Davie JR, Bowers WJ, Federoff HJ, Rose DW, Rosenfeld MG, Brehm P, Mandel G. Regulation of neuronal traits by a novel transcriptional complex. Neuron 2001; 31:353-65.
11. Chong JA, Tapia-Ramirez J, Kim S, Toledo-Aral JJ, Zheng Y, Boutros MC, Altshuller YM, Frohman MA, Kraner SD, Mandel G. REST: A mammalian silencer protein that restricts sodium channel gene expression to neurons. Cell 1995; 80:949-57.
12. You A, Tong JK, Grozinger CM, Schreiber SL. CoREST is an integral component of the CoREST-human histone deacetylase complex. Proc Natl Acad Sci USA 2001; 98:1454-8.
13. Andres ME, Burger C, Peral-Rubio MJ, Battaglioli E, Anderson ME, Grimes J, Dallman J, Ballas N, Mandel G. CoREST: A functional corepressor required for regulation of neural-specific gene expression. Proc Natl Acad Sci USA 1999; 96:9873-8.
14. Aravind L, Iyer LM. The SWIRM domain: A conserved module found in chromosomal proteins points to novel chromatin-modifying activities. Genome Biol 2002; 3:0039.1-7
15. Tochio N, Umehara T, Koshiba S, Inoue M, Yabuki T, Aoki M, Seki E, Watanabe S, Tomo Y, Hanada M, Ikari M, Sato M, Terada T, Nagase T, Ohara O, Shirouzu M, Tanaka A, Kigawa T, Yokoyama S. Solution structure of the SWIRM domain of human histone demethylase LSD1. Structure 2006; 14:457-68.
16. Shi Y, Lan F, Matson C, Mulligan P, Whetstine JR, Cole PA, Casero RA, Shi Y. Histone demethylation mediated by the nuclear amine oxidase homolog LSD1. Cell 2004; 119:941-53.
17. Tschiersch B, Hofmann A, Krauss V, Dorn R, Korge G, Reuter G. The protein encoded by the Drosophila position-effect variegation suppressor gene Su(var)3-9 combines domains of antagonistic regulators of homeotic gene complexes. EMBO J 1994; 13:3822-31.
18. Tachibana M, Sugimoto K, Fukushima T, Shinkai Y. Set domain-containing protein, G9a, is a novel lysine-preferring mammalian histone methyltransferase with hyperactivity and specific selectivity to lysines 9 and 27 of histone H3. J Biol Chem 2001; 276:25309-17.
19. Roopra A, Qazi R, Schoenike B, Daley TJ, Morrison JF. Localized domains of G9a-mediated histone methylation are required for silencing of neuronal genes. Mol Cell 2004; 14:727-38.
20. Ballas N, Mandel G. The many faces of REST oversee epigenetic programming of neuronal genes. Curr Opin Neurobiol 2005; 15:500-6.
21. Grimes JA, Nielsen SJ, Battaglioli E, Miska EA, Speh JC, Berry DL, Atouf F, Holdener BC, Mandel G, Kouzarides T. The corepressor mSin3A is a functional component of the REST-COREST repressor complex. J Biol Chem 2000; 275:9461-7.
22. Cowger JJ, Zhao Q, Isovic M, Torchia J. Biochemical characterization of the zinc-finger protein 217 transcriptional repressor complex: Identification of a ZNF217 consensus recognition sequence. Oncogene 2006; In press.
23. Loidl P. A plant dialect of the histone language. Trends Plant Sci 2004; 9:84-90.
24. Wagner D. Chromatin regulation of plant development. Curr Opin Plant Biol 2003; 6:20-8.
25. He Y, Michaels SD, Amasino RM. Regulation of flowering time by histone acetylation in Arabidopsis. Science 2003; 302:1751-4.
26. Lindroth AM, Shultis D, Jasencakova Z, Fuchs J, Johnson L, Schubert D, Patnaik D, Pradhan S, Goodrich J, Schubert I, Jenuwein T, Khorasanizadeh S, Jacobsen SE. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J 2004; 23:4286-96.
27. Jasencakova Z, Soppe WJ, Meister A, Gernand D, Turner BM, Schubert I. Histone modifications in Arabidopsis - High methylation of H3 lysine 9 is dispensable for constitutive heterochromatin. Plant J 2003; 33:471-80.
28. Soppe WJ, Jasencakova Z, Houben A, Kakutani T, Meister A, Huang MS, Jacobsen SE, Schubert I, Fransz PF. DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis, EMBO J 2002; 21:6549-59.
29. Bastow R, Mylne JS, Lister C, Lippman Z, Martienssen RA, Dean C. Vernalization requires epigenetic silencing of FLC by histone methylation. Nature 2004; 427:164-7.
30. Ebert A, Lein S, Schotta G, Reuter G. Histone modification and the control of heterochromatic gene silencing in Drosophila. Chromosome Res 2006; 14:377-92.
31. Zhao Z, Yu Y, Meyer D, Wu C, Shen WH. Prevention of early flowering by expression of FLOWERING LOCUS C requires methylation of histone H3 K36. Nat Cell Biol 2005; 7:1156-60.
32. Verbsky ML, Richards EJ. Chromatin remodeling in plants. Curr Opin Plant Biol 2001; 4:494-500.
33. Li G, Hall TC, Holmes-Davis R. Plant chromatin: Development and gene control. Bioessays 2002; 24:234-43.
34. Pandey R, Müller A, Napoli CA, Selinger DA, Pikaard CS, Richards EJ, Bender J, Mount DW, Jorgensen RA. Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Nucl Acid Res 2002; 30:5036-55.
35. Springer NM, Napoli CA, Selinger DA, Pandey R, Cone KC, Chandler VL, Kaeppler HF, Kaeppler SM. Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. Plant Physiol 2003; 132:907-25.
36. Jepsen K, Rosenfeld MG. Biological roles and mechanistic actions of corepressor complexes. J Cell Sci 2002; 115:689-98.
37. Ballas N, Grunseich C, Lu DD, Speh JC, Mandel G. REST and its corepressors mediate plasticity of neuronal gene chromatin throughout neurogenesis. Cell 2005; 121:645-57.
38. Cheung WL, Ajiro K, Samejima K, Kloc M, Cheung P, Mizzen CA, Beeser A, Etkin LD, Chernoff J, Earnshaw WC, Allis CD. Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase. Cell 2003; 113:507-17.
39. Robzyk K, Recht J, Osley MA. Rad6-dependent ubiquitination of histone H2B in yeast. Science 2000; 287:501-4.
40. Schoenherr CJ, Anderson DJ. The neuron-restrictive silencer factor (NRSF): A coordinate repressor of multiple neuron-specific genes. Science 1995; 267:1360-3.