-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
9644272811
-
Energetic components VirD4, VirB11 and VirB4 mediate early DNA transfer reactions required for bacterial type IV secretion
-
Atmakuri K., Cascales E., and Christie P.J. Energetic components VirD4, VirB11 and VirB4 mediate early DNA transfer reactions required for bacterial type IV secretion. Mol. Microbiol. 54 (2004) 1199-1211
-
(2004)
Mol. Microbiol.
, vol.54
, pp. 1199-1211
-
-
Atmakuri, K.1
Cascales, E.2
Christie, P.J.3
-
3
-
-
0021104934
-
Partition of unit-copy miniplasmids to daughter cells: I. P1 and F miniplasmids contain discrete, interchangeable sequences sufficient to promote equipartition
-
Austin S., and Abeles A. Partition of unit-copy miniplasmids to daughter cells: I. P1 and F miniplasmids contain discrete, interchangeable sequences sufficient to promote equipartition. J. Mol. Biol. 169 (1983) 353-372
-
(1983)
J. Mol. Biol.
, vol.169
, pp. 353-372
-
-
Austin, S.1
Abeles, A.2
-
4
-
-
4944234921
-
ParB of Pseudomonas aeruginosa: interactions with its partner ParA and its target parS and specific effects on bacterial growth
-
Bartosik A.A., Lasocki K., Mierzejewska J., Thomas C.M., and Jagura-Burdzy G. ParB of Pseudomonas aeruginosa: interactions with its partner ParA and its target parS and specific effects on bacterial growth. J. Bacteriol. 186 (2004) 6983-6998
-
(2004)
J. Bacteriol.
, vol.186
, pp. 6983-6998
-
-
Bartosik, A.A.1
Lasocki, K.2
Mierzejewska, J.3
Thomas, C.M.4
Jagura-Burdzy, G.5
-
5
-
-
0038403691
-
The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases
-
Bateman A., and Rawlings N.D. The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases. Trends Biochem. Sci. 28 (2003) 234-237
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 234-237
-
-
Bateman, A.1
Rawlings, N.D.2
-
6
-
-
39549088785
-
-
Beasley, F.C., 2004. Characterization of diversity, chromate resistance, and aromatic hydrocarbon degradation among Arthrobacter isolates from mixed waste soil. MS Thesis, Purdue University, West Lafayette.
-
Beasley, F.C., 2004. Characterization of diversity, chromate resistance, and aromatic hydrocarbon degradation among Arthrobacter isolates from mixed waste soil. MS Thesis, Purdue University, West Lafayette.
-
-
-
-
7
-
-
0033899751
-
Natural selection, infectious transfer and the existence conditions for bacterial plasmids
-
Bergstrom C.T., Lipsitch M., and Levin B.R. Natural selection, infectious transfer and the existence conditions for bacterial plasmids. Genetics 155 (2000) 1505-1519
-
(2000)
Genetics
, vol.155
, pp. 1505-1519
-
-
Bergstrom, C.T.1
Lipsitch, M.2
Levin, B.R.3
-
8
-
-
23144452801
-
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
-
Besemer J., and Borodovsky M. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic. Acids Res. 33 (2005) W451-W454
-
(2005)
Nucleic. Acids Res.
, vol.33
-
-
Besemer, J.1
Borodovsky, M.2
-
9
-
-
0035856287
-
The bacterial IParA-ParB partitioning proteins
-
Bignell C., and Thomas C.M. The bacterial IParA-ParB partitioning proteins. J. Biotech. 91 (2001) 1-34
-
(2001)
J. Biotech.
, vol.91
, pp. 1-34
-
-
Bignell, C.1
Thomas, C.M.2
-
10
-
-
0034811821
-
Cloning and functional analysis of the pbr lead resistance determinant of Ralstonia metallidurans CH34
-
Borremans B., Hobman J.L., Provoost A., Brown N.L., and van der Lelie D. Cloning and functional analysis of the pbr lead resistance determinant of Ralstonia metallidurans CH34. J. Bacteriol. 183 (2001) 5651-5658
-
(2001)
J. Bacteriol.
, vol.183
, pp. 5651-5658
-
-
Borremans, B.1
Hobman, J.L.2
Provoost, A.3
Brown, N.L.4
van der Lelie, D.5
-
11
-
-
0033106245
-
P1 ParA interacts with the P1 partition complex at parS and an ATP-ADP switch controls ParA activities
-
Bouet J.Y., and Funnell B.E. P1 ParA interacts with the P1 partition complex at parS and an ATP-ADP switch controls ParA activities. EMBO J. 18 (1999) 1415-1424
-
(1999)
EMBO J.
, vol.18
, pp. 1415-1424
-
-
Bouet, J.Y.1
Funnell, B.E.2
-
12
-
-
0015550771
-
Survival of Arthrobacter crystallopoietes during prolonged periods of extreme desiccation
-
Boylen C.W. Survival of Arthrobacter crystallopoietes during prolonged periods of extreme desiccation. J. Bacteriol. 113 (1973) 33-37
-
(1973)
J. Bacteriol.
, vol.113
, pp. 33-37
-
-
Boylen, C.W.1
-
13
-
-
2442483942
-
Genetic evidence of a coupling role for the TraG protein family in bacterial conjugation
-
Cabezón E., Ignacio Sastre J., and de la Cruz F. Genetic evidence of a coupling role for the TraG protein family in bacterial conjugation. Mol. Gen. Genet. 254 (1997) 400-406
-
(1997)
Mol. Gen. Genet.
, vol.254
, pp. 400-406
-
-
Cabezón, E.1
Ignacio Sastre, J.2
de la Cruz, F.3
-
14
-
-
1842456892
-
The versatile bacterial type IV secretion systems
-
Cascales E., and Christie P.J. The versatile bacterial type IV secretion systems. Nat. Rev. Microbiol. 1 (2003) 137-149
-
(2003)
Nat. Rev. Microbiol.
, vol.1
, pp. 137-149
-
-
Cascales, E.1
Christie, P.J.2
-
15
-
-
28544449319
-
The ins and outs of DNA transfer in bacteria
-
Chen I., Christie P.J., and Dubnau D. The ins and outs of DNA transfer in bacteria. Science 310 (2005) 1456-1460
-
(2005)
Science
, vol.310
, pp. 1456-1460
-
-
Chen, I.1
Christie, P.J.2
Dubnau, D.3
-
16
-
-
32044440515
-
Isolation, sequence analysis, and comparison of two plasmids (28 and 29 kilobases) from the biomining bacterium Leptospirillum ferrooxidans ATCC 49879
-
Coram N.J., van Zyl L.J., and Rawlings D.E. Isolation, sequence analysis, and comparison of two plasmids (28 and 29 kilobases) from the biomining bacterium Leptospirillum ferrooxidans ATCC 49879. Appl. Environ. Microbiol. 71 (2005) 7515-7522
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 7515-7522
-
-
Coram, N.J.1
van Zyl, L.J.2
Rawlings, D.E.3
-
17
-
-
0030732679
-
Conjugative plasmids isolated from bacteria in marine environments show various degrees of homology to each other and are not closely related to well-characterized plasmids
-
Dahlberg C., Linberg C., Torsvik V., and Hermansson M. Conjugative plasmids isolated from bacteria in marine environments show various degrees of homology to each other and are not closely related to well-characterized plasmids. Appl. Environ. Microbiol. 63 (1997) 4692-4697
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4692-4697
-
-
Dahlberg, C.1
Linberg, C.2
Torsvik, V.3
Hermansson, M.4
-
18
-
-
0029798284
-
The P1 ParA protein and its ATPase activity play a direct role in the segregation of plasmid copies to daughter cells
-
Davis M.A., Radnedge L., Martin K.A., Hayes F., Youngren B., and Austin S.J. The P1 ParA protein and its ATPase activity play a direct role in the segregation of plasmid copies to daughter cells. Mol. Microbiol. 21 (1996) 1029-1036
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 1029-1036
-
-
Davis, M.A.1
Radnedge, L.2
Martin, K.A.3
Hayes, F.4
Youngren, B.5
Austin, S.J.6
-
19
-
-
0031811125
-
Replication and control of circular bacterial plasmids
-
del Solar G., Giraldo R., Ruiz-Echevarria M.J., Espinosa M., and Diaz-Orejas R. Replication and control of circular bacterial plasmids. Microbiol. Mol. Biol. Rev. 62 (1998) 434-464
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 434-464
-
-
del Solar, G.1
Giraldo, R.2
Ruiz-Echevarria, M.J.3
Espinosa, M.4
Diaz-Orejas, R.5
-
20
-
-
0034991776
-
Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B
-
Eaton R.W. Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B. J. Bacteriol. 183 (2001) 3689-3703
-
(2001)
J. Bacteriol.
, vol.183
, pp. 3689-3703
-
-
Eaton, R.W.1
-
21
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. accuracy assessment
-
Ewing B., Hillier L., Wendl M.C., and Green P. Base-calling of automated sequencer traces using phred. I. accuracy assessment. Genome Res. 8 (1998) 175-185
-
(1998)
Genome Res.
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
22
-
-
0036065207
-
Transfer origins in the conjugative Enterococcus faecalis plasmids pAD1 and pAM373: identification of the pAD1 nic site, a specific relaxase and a possible TraG-like protein
-
Francia M.V., and Clewell D.B. Transfer origins in the conjugative Enterococcus faecalis plasmids pAD1 and pAM373: identification of the pAD1 nic site, a specific relaxase and a possible TraG-like protein. Mol. Microbiol. 45 (2002) 375-395
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 375-395
-
-
Francia, M.V.1
Clewell, D.B.2
-
23
-
-
1242328685
-
A classification scheme for mobilization regions of bacterial plasmids
-
Francia M.V., Varsaki A., Garcillan-Barcia M.P., Latorre A., Drainas C., and Cruz F. A classification scheme for mobilization regions of bacterial plasmids. FEMS Microbiol. Rev. 28 (2004) 79-100
-
(2004)
FEMS Microbiol. Rev.
, vol.28
, pp. 79-100
-
-
Francia, M.V.1
Varsaki, A.2
Garcillan-Barcia, M.P.3
Latorre, A.4
Drainas, C.5
Cruz, F.6
-
24
-
-
3242773894
-
Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the Hanford site, Washington state
-
Fredrickson J.K., Zachara J.M., Balkwill D.L., Kennedy D., Li S.-M.W., Kostandarithes H.M., Daly M.J., Romine M.F., and Brockman F.J. Geomicrobiology of high-level nuclear waste-contaminated vadose sediments at the Hanford site, Washington state. Appl. Environ. Microbiol. 70 (2004) 4230-4241
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 4230-4241
-
-
Fredrickson, J.K.1
Zachara, J.M.2
Balkwill, D.L.3
Kennedy, D.4
Li, S.-M.W.5
Kostandarithes, H.M.6
Daly, M.J.7
Romine, M.F.8
Brockman, F.J.9
-
25
-
-
0027512780
-
The P1 plasmid partition complex at parS. II. Analysis of ParB protein binding activity and specificity
-
Funnell B., and Gagnier L. The P1 plasmid partition complex at parS. II. Analysis of ParB protein binding activity and specificity. J. Biol. Chem. 268 (1993) 3616-3624
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 3616-3624
-
-
Funnell, B.1
Gagnier, L.2
-
26
-
-
14544272935
-
Partition systems of bacterial plasmids
-
Funnell B.E., and Phillips G.J. (Eds), ASM Press, Washington, DC
-
Funnell B.E., and Slavcev R.A. Partition systems of bacterial plasmids. In: Funnell B.E., and Phillips G.J. (Eds). Plasmid Biology (2004), ASM Press, Washington, DC 81-103
-
(2004)
Plasmid Biology
, pp. 81-103
-
-
Funnell, B.E.1
Slavcev, R.A.2
-
27
-
-
0033861269
-
Plasmid and chromosome partitioning: surprises from phylogeny
-
Gerdes K., Moller-Jensen J., and Jensen R.B. Plasmid and chromosome partitioning: surprises from phylogeny. Mol. Microbiol. 37 (2000) 455-466
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 455-466
-
-
Gerdes, K.1
Moller-Jensen, J.2
Jensen, R.B.3
-
28
-
-
0038385173
-
Interaction between the IncHI1 plasmid R27 coupling protein and type IV secretion system: TraG associates with the coiled-coil mating pair formation protein TrhB
-
Gilmour M.W., Gunton J.E., Lawley T.D., and Taylor D.E. Interaction between the IncHI1 plasmid R27 coupling protein and type IV secretion system: TraG associates with the coiled-coil mating pair formation protein TrhB. Mol. Microbiol. 49 (2003) 105-116
-
(2003)
Mol. Microbiol.
, vol.49
, pp. 105-116
-
-
Gilmour, M.W.1
Gunton, J.E.2
Lawley, T.D.3
Taylor, D.E.4
-
29
-
-
23944499633
-
Horizontal gene transfer, genome innovation and evolution
-
Gogarten J.P., and Townsend J.P. Horizontal gene transfer, genome innovation and evolution. Nat. Rev. Microbiol. 3 (2005) 679-687
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 679-687
-
-
Gogarten, J.P.1
Townsend, J.P.2
-
31
-
-
0344628800
-
Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC
-
Guasch A., Lucas M., Moncalian G., Cabezas M., Perez-Luque R., Gomis-Ruth F.X., de la Cruz F., and Coll M. Recognition and processing of the origin of transfer DNA by conjugative relaxase TrwC. Nat. Struct. Mol. Biol. 10 (2003) 1002-1010
-
(2003)
Nat. Struct. Mol. Biol.
, vol.10
, pp. 1002-1010
-
-
Guasch, A.1
Lucas, M.2
Moncalian, G.3
Cabezas, M.4
Perez-Luque, R.5
Gomis-Ruth, F.X.6
de la Cruz, F.7
Coll, M.8
-
32
-
-
39549119433
-
-
Hallet, B., V. Vanhooff, Cornet, F., 2004. DNA site-specific resolution systems. In: B.E. Funnell, Phillips, G.J. (Eds.), Plasmid Biology, pp. 145-180.
-
Hallet, B., V. Vanhooff, Cornet, F., 2004. DNA site-specific resolution systems. In: B.E. Funnell, Phillips, G.J. (Eds.), Plasmid Biology, pp. 145-180.
-
-
-
-
33
-
-
9144220305
-
The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1{beta} group without any accessory genes
-
Heuer H., Szczepanowski R., Schneiker S., Puhler A., Top E.M., and Schluter A. The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1{beta} group without any accessory genes. Microbiology 150 (2004) 3591-3599
-
(2004)
Microbiology
, vol.150
, pp. 3591-3599
-
-
Heuer, H.1
Szczepanowski, R.2
Schneiker, S.3
Puhler, A.4
Top, E.M.5
Schluter, A.6
-
34
-
-
11244260558
-
The bacterial oxidation of Nicotine. I. Nicotine oxidation by cell-free preparations
-
Hochstein L.I., and Rittenberg S.C. The bacterial oxidation of Nicotine. I. Nicotine oxidation by cell-free preparations. J. Biol. Chem. 234 (1959) 151-155
-
(1959)
J. Biol. Chem.
, vol.234
, pp. 151-155
-
-
Hochstein, L.I.1
Rittenberg, S.C.2
-
35
-
-
0037334848
-
Sequence of the 165-Kilobase catabolic plasmid pAO1 from Arthrobacter nicotinovorans and identification of a pAO1-dependent nicotine uptake system
-
Igloi G.L., and Brandsch R. Sequence of the 165-Kilobase catabolic plasmid pAO1 from Arthrobacter nicotinovorans and identification of a pAO1-dependent nicotine uptake system. J. Bacteriol. 185 (2003) 1976-1986
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1976-1986
-
-
Igloi, G.L.1
Brandsch, R.2
-
36
-
-
3843139431
-
Agrobacterium tumefaciens VirB6 domains direct the ordered export of a DNA substrate through a type IV secretion system
-
Jakubowski S.J., Krishnamoorthy V., Cascales E., and Christie P.J. Agrobacterium tumefaciens VirB6 domains direct the ordered export of a DNA substrate through a type IV secretion system. J. Mol. Biol. 341 (2004) 961-977
-
(2004)
J. Mol. Biol.
, vol.341
, pp. 961-977
-
-
Jakubowski, S.J.1
Krishnamoorthy, V.2
Cascales, E.3
Christie, P.J.4
-
37
-
-
39549118992
-
-
Jerke, K.H., 2006. Physiological and genetic analysis of plasmid-mediated metal resistance in Arthrobacter sp. AK-1. Ph.D. Thesis, Purdue University, West Lafayette.
-
Jerke, K.H., 2006. Physiological and genetic analysis of plasmid-mediated metal resistance in Arthrobacter sp. AK-1. Ph.D. Thesis, Purdue University, West Lafayette.
-
-
-
-
38
-
-
0001450075
-
The genus Arthrobacter
-
Ballows A., Truper H.G., Dworkin M., Harder W., and Schleifer K.H. (Eds), Springer, NY, New York
-
Jones D., and Keddie R.M. The genus Arthrobacter. In: Ballows A., Truper H.G., Dworkin M., Harder W., and Schleifer K.H. (Eds). The Prokaryotes (1992), Springer, NY, New York
-
(1992)
The Prokaryotes
-
-
Jones, D.1
Keddie, R.M.2
-
39
-
-
33646382598
-
Microbial community analysis of soils contaminated with lead, chromium and petroleum hydrocarbons
-
Joynt J., Bischoff M., Turco R., Konopka A., and Nakatsu C. Microbial community analysis of soils contaminated with lead, chromium and petroleum hydrocarbons. Microbiol. Ecol. 51 (2006) 209-219
-
(2006)
Microbiol. Ecol.
, vol.51
, pp. 209-219
-
-
Joynt, J.1
Bischoff, M.2
Turco, R.3
Konopka, A.4
Nakatsu, C.5
-
40
-
-
0031440479
-
Rolling-circle replication of bacterial plasmids
-
Khan S. Rolling-circle replication of bacterial plasmids. Microbiol. Mol. Biol. Rev. 61 (1997) 442-455
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 442-455
-
-
Khan, S.1
-
41
-
-
33746423459
-
Comparative analysis of three indigenous plasmids from Xanthomonas axonopodis pv. glycines
-
Kim J.-G., Choi S., Oh J., Moon J.S., and Hwang I. Comparative analysis of three indigenous plasmids from Xanthomonas axonopodis pv. glycines. Plasmid 56 (2006) 79-87
-
(2006)
Plasmid
, vol.56
, pp. 79-87
-
-
Kim, J.-G.1
Choi, S.2
Oh, J.3
Moon, J.S.4
Hwang, I.5
-
42
-
-
0024600177
-
Characterization of a Pseudomonas sp. capable of aniline degradation in the presence of secondary carbon sources
-
Konopka A., Knight D., and Turco R.F. Characterization of a Pseudomonas sp. capable of aniline degradation in the presence of secondary carbon sources. Appl. Environ. Microbiol. 55 (1989) 385-389
-
(1989)
Appl. Environ. Microbiol.
, vol.55
, pp. 385-389
-
-
Konopka, A.1
Knight, D.2
Turco, R.F.3
-
43
-
-
3242810318
-
MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
-
(2004)
Brief. Bioinform.
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
44
-
-
0017225965
-
Colonization of soil by Arthrobacter and Pseudomonas under varying conditions of water and nutrient availability as studied by plate counts and transmission electron microscopy
-
Labeda D.P., Liu K.C., and Casida Jr. L.E. Colonization of soil by Arthrobacter and Pseudomonas under varying conditions of water and nutrient availability as studied by plate counts and transmission electron microscopy. Appl. Environ. Microbiol. 31 (1976) 551-561
-
(1976)
Appl. Environ. Microbiol.
, vol.31
, pp. 551-561
-
-
Labeda, D.P.1
Liu, K.C.2
Casida Jr., L.E.3
-
45
-
-
0028352598
-
Plasmid-borne cadmium resistance genes in Listeria monocytogenes are similar to cadA and cadC of Staphylococcus aureus and are induced by cadmium
-
Lebrun M., Audurier A., and Cossart P. Plasmid-borne cadmium resistance genes in Listeria monocytogenes are similar to cadA and cadC of Staphylococcus aureus and are induced by cadmium. J. Bacteriol. 176 (1994) 3040-3048
-
(1994)
J. Bacteriol.
, vol.176
, pp. 3040-3048
-
-
Lebrun, M.1
Audurier, A.2
Cossart, P.3
-
46
-
-
33644877451
-
SMART 5: domains in the context of genomes and networks
-
Letunic I., Copley R.R., Pils B., Pinkert S., Schultz J., and Bork P. SMART 5: domains in the context of genomes and networks. Nucleic. Acids Res. 34 (2006) D257-D260
-
(2006)
Nucleic. Acids Res.
, vol.34
-
-
Letunic, I.1
Copley, R.R.2
Pils, B.3
Pinkert, S.4
Schultz, J.5
Bork, P.6
-
47
-
-
0034691077
-
Bacteria are different: observations, interpretations, speculations, and opinions about the mechanisms of adaptive evolution in prokaryotes
-
Levin B.R., and Bergstrom C.T. Bacteria are different: observations, interpretations, speculations, and opinions about the mechanisms of adaptive evolution in prokaryotes. Proc. Natl. Acad. Sci. USA 97 (2000) 6981-6985
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6981-6985
-
-
Levin, B.R.1
Bergstrom, C.T.2
-
48
-
-
3142521718
-
The role of Par proteins in the active segregation of the P1 plasmid
-
Li Y., Dabrazhynetskaya A., Youngren B., and Austin S. The role of Par proteins in the active segregation of the P1 plasmid. Mol. Microbiol. 53 (2004) 93-102
-
(2004)
Mol. Microbiol.
, vol.53
, pp. 93-102
-
-
Li, Y.1
Dabrazhynetskaya, A.2
Youngren, B.3
Austin, S.4
-
50
-
-
0042838290
-
Conjugative coupling proteins interact with cognate and heterologous VirB10-like proteins while exhibiting specificity for cognate relaxosomes
-
Llosa M., Zunzunegui S., and de la Cruz F. Conjugative coupling proteins interact with cognate and heterologous VirB10-like proteins while exhibiting specificity for cognate relaxosomes. Proc. Natl. Acad. Sci. USA 100 (2003) 10465-10470
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 10465-10470
-
-
Llosa, M.1
Zunzunegui, S.2
de la Cruz, F.3
-
51
-
-
3242887157
-
CD-Search: protein domain annotations on the fly
-
Marchler-Bauer A., and Bryant S.H. CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 32 (2004) W327-W331
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
52
-
-
0029742806
-
Bacterial heavy metal tolerance-extreme resistance to nickle in Arthrobacter spp. strains
-
Margesin R., and Schinner F. Bacterial heavy metal tolerance-extreme resistance to nickle in Arthrobacter spp. strains. J. Basic Microbiol 36 (1996) 269-282
-
(1996)
J. Basic Microbiol
, vol.36
, pp. 269-282
-
-
Margesin, R.1
Schinner, F.2
-
53
-
-
33846016960
-
Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1
-
Mongodin E.F., Shapir N., Daugherty S.C., DeBoy R.T., Emmerson J.B., Shvartzbeyn A., Radune D., Vamathevan J., Riggs F., Grinberg V., Khouri H., Wackett L.P., Nelson K.E., and Sadowsky M.J. Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1. PLoS Genet. 2 (2006) 2094-2102
-
(2006)
PLoS Genet.
, vol.2
, pp. 2094-2102
-
-
Mongodin, E.F.1
Shapir, N.2
Daugherty, S.C.3
DeBoy, R.T.4
Emmerson, J.B.5
Shvartzbeyn, A.6
Radune, D.7
Vamathevan, J.8
Riggs, F.9
Grinberg, V.10
Khouri, H.11
Wackett, L.P.12
Nelson, K.E.13
Sadowsky, M.J.14
-
54
-
-
39549093876
-
-
Nakatsu, C., Vargha, M., Steger, J., Konopka, A. (2001) Chromium resistance by Arthrobacter sp. Cr15 isolated from metal contaminated soil. American Society for Microbiology General Meeting, Orlando, Fl.
-
Nakatsu, C., Vargha, M., Steger, J., Konopka, A. (2001) Chromium resistance by Arthrobacter sp. Cr15 isolated from metal contaminated soil. American Society for Microbiology General Meeting, Orlando, Fl.
-
-
-
-
55
-
-
29144478871
-
Soil microbial community responses to additions of organic carbon substrates and heavy metals (Pb and Cr)
-
Nakatsu C.H., Carmosini N., Baldwin B., Beasley F., Kourtev P., and Konopka A. Soil microbial community responses to additions of organic carbon substrates and heavy metals (Pb and Cr). Appl. Environ. Microbiol. 71 (2005) 7679-7689
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 7679-7689
-
-
Nakatsu, C.H.1
Carmosini, N.2
Baldwin, B.3
Beasley, F.4
Kourtev, P.5
Konopka, A.6
-
56
-
-
0042929573
-
Clustering versus random segregation of plasmids lacking a partitioning function: a plasmid paradox?
-
Nordstrom K., and Gerdes K. Clustering versus random segregation of plasmids lacking a partitioning function: a plasmid paradox?. Plasmid 50 (2003) 95-101
-
(2003)
Plasmid
, vol.50
, pp. 95-101
-
-
Nordstrom, K.1
Gerdes, K.2
-
57
-
-
0018965756
-
Partitioning of plasmid R1 in Escherichia coli, I. Kinetics of loss of plasmid derivatives deleted of the par region
-
Nordstrom K., Molin S., and Aagaard-Hansen H. Partitioning of plasmid R1 in Escherichia coli, I. Kinetics of loss of plasmid derivatives deleted of the par region. Plasmid 4 (1980) 215-227
-
(1980)
Plasmid
, vol.4
, pp. 215-227
-
-
Nordstrom, K.1
Molin, S.2
Aagaard-Hansen, H.3
-
59
-
-
0001476958
-
Cadmium resistance from Staphylococcus aureus plasmid pI258 cadA gene results from a cadmium-efflux ATPase
-
Nucifora G., Chu L., Misra T.K., and Silver S. Cadmium resistance from Staphylococcus aureus plasmid pI258 cadA gene results from a cadmium-efflux ATPase. Proc. Natl. Acad. Sci. USA 86 (1989) 3544-3548
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 3544-3548
-
-
Nucifora, G.1
Chu, L.2
Misra, T.K.3
Silver, S.4
-
60
-
-
14044270156
-
Identification of large linear plasmids in Arthrobacter spp. encoding the degradation of quinaldine to anthranilate
-
Overhage J., Sielker S., Homburg S., Parschat K., and Fetzner S. Identification of large linear plasmids in Arthrobacter spp. encoding the degradation of quinaldine to anthranilate. Microbiology 151 (2005) 491-500
-
(2005)
Microbiology
, vol.151
, pp. 491-500
-
-
Overhage, J.1
Sielker, S.2
Homburg, S.3
Parschat, K.4
Fetzner, S.5
-
61
-
-
0028049489
-
Concerted action of three distinct domains in the DNA cleaving-joining reaction catalyzed by relaxase (TraI) of conjugative plasmid RP4
-
Pansegrau W., Schroder W., and Lanka E. Concerted action of three distinct domains in the DNA cleaving-joining reaction catalyzed by relaxase (TraI) of conjugative plasmid RP4. J. Biol. Chem. 269 (1994) 2782-2789
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 2782-2789
-
-
Pansegrau, W.1
Schroder, W.2
Lanka, E.3
-
62
-
-
0032910863
-
Stabilization of the relaxosome and stimulation of conjugal transfer are genetically distinct functions of the R1162 protein MobB
-
Perwez T., and Meyer R.J. Stabilization of the relaxosome and stimulation of conjugal transfer are genetically distinct functions of the R1162 protein MobB. J. Bacteriol. 181 (1999) 2124-2131
-
(1999)
J. Bacteriol.
, vol.181
, pp. 2124-2131
-
-
Perwez, T.1
Meyer, R.J.2
-
63
-
-
0033790620
-
Analyzing DNA strand compositional asymmetry to identify candidate replication origins of Borrelia burgdorferi linear and circular plasmids
-
Picardeau M., Lobry J.R., and Hinnebusch B.J. Analyzing DNA strand compositional asymmetry to identify candidate replication origins of Borrelia burgdorferi linear and circular plasmids. Genome Res. 10 (2000) 1594-1604
-
(2000)
Genome Res.
, vol.10
, pp. 1594-1604
-
-
Picardeau, M.1
Lobry, J.R.2
Hinnebusch, B.J.3
-
64
-
-
14544271895
-
The evolution of pTF-FC2 and pTC-F14, two related plasmids of the IncQ-family
-
Rawlings D.E. The evolution of pTF-FC2 and pTC-F14, two related plasmids of the IncQ-family. Plasmid 53 (2005) 137-147
-
(2005)
Plasmid
, vol.53
, pp. 137-147
-
-
Rawlings, D.E.1
-
65
-
-
0037727706
-
Amidase domains from bacterial and phage autolysins define a family of [gamma]-, -glutamate-specific amidohydrolases.
-
Rigden D.J., Jedrzejas M.J., and Galperin M.Y. Amidase domains from bacterial and phage autolysins define a family of [gamma]-, -glutamate-specific amidohydrolases. Trends Biochem. Sci. 28 (2003) 230-234
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 230-234
-
-
Rigden, D.J.1
Jedrzejas, M.J.2
Galperin, M.Y.3
-
66
-
-
0033593587
-
Silencing of genes flanking the P1 plasmid centromere
-
Rodionov O., Lobocka M., and Yarmolinsky M. Silencing of genes flanking the P1 plasmid centromere. Science 283 (1999) 546-549
-
(1999)
Science
, vol.283
, pp. 546-549
-
-
Rodionov, O.1
Lobocka, M.2
Yarmolinsky, M.3
-
67
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
68
-
-
3242743105
-
Arthrobacter aurescens TC1 atrazine catabolism genes trzN, atzB, and atzC are linked on a 160-kilobase region and are functional in Escherichia coli
-
Sajjaphan K., Shapir N., Wackett L.P., Palmer M., Blackmon B., Tomkins J., and Sadowsky M.J. Arthrobacter aurescens TC1 atrazine catabolism genes trzN, atzB, and atzC are linked on a 160-kilobase region and are functional in Escherichia coli. Appl. Environ. Microbiol. 70 (2004) 4402-4407
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 4402-4407
-
-
Sajjaphan, K.1
Shapir, N.2
Wackett, L.P.3
Palmer, M.4
Blackmon, B.5
Tomkins, J.6
Sadowsky, M.J.7
-
69
-
-
39549106972
-
-
Sambrook, J., Fritsch, E.F. Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual, second ed.
-
Sambrook, J., Fritsch, E.F. Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual, second ed.
-
-
-
-
71
-
-
0030785293
-
The RepA protein of plasmid RSF1010 is a replicative DNA helicase
-
Scherzinger E., Ziegelin G., Barcena M., Carazo J.M., Lurz R., and Lanka E. The RepA protein of plasmid RSF1010 is a replicative DNA helicase. J. Biol. Chem. 272 (1997) 30228-30236
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 30228-30236
-
-
Scherzinger, E.1
Ziegelin, G.2
Barcena, M.3
Carazo, J.M.4
Lurz, R.5
Lanka, E.6
-
72
-
-
0036239133
-
TraG-like proteins of DNA transfer systems and of the Helicobacter pylori type IV secretion system: inner membrane gate for exported substrates?
-
Schroder G., Krause S., Zechner E.L., Traxler B., Yeo H.-J., Lurz R., Waksman G., and Lanka E. TraG-like proteins of DNA transfer systems and of the Helicobacter pylori type IV secretion system: inner membrane gate for exported substrates?. J. Bacteriol. 184 (2002) 2767-2779
-
(2002)
J. Bacteriol.
, vol.184
, pp. 2767-2779
-
-
Schroder, G.1
Krause, S.2
Zechner, E.L.3
Traxler, B.4
Yeo, H.-J.5
Lurz, R.6
Waksman, G.7
Lanka, E.8
-
73
-
-
19344374255
-
The mating pair formation system of conjugative plasmids-A versatile secretion machinery for transfer of proteins and DNA
-
Schroder G., and Lanka E. The mating pair formation system of conjugative plasmids-A versatile secretion machinery for transfer of proteins and DNA. Plasmid 54 (2005) 1-25
-
(2005)
Plasmid
, vol.54
, pp. 1-25
-
-
Schroder, G.1
Lanka, E.2
-
74
-
-
0036848536
-
The prevalence and diversity of mobile genetic elements in bacterial communities of different environmental habitats: insights gained from different methodological approaches
-
Smalla K., and Sobecky P.A. The prevalence and diversity of mobile genetic elements in bacterial communities of different environmental habitats: insights gained from different methodological approaches. FEMS Microbiol. Ecol. 42 (2002) 165-175
-
(2002)
FEMS Microbiol. Ecol.
, vol.42
, pp. 165-175
-
-
Smalla, K.1
Sobecky, P.A.2
-
75
-
-
0031030474
-
Plasmids isolated from marine sediment microbial communities contain replication and incompatibility regions unrelated to those of known plasmid groups
-
Sobecky P., Mincer T., Chang M., and Helinski D. Plasmids isolated from marine sediment microbial communities contain replication and incompatibility regions unrelated to those of known plasmid groups. Appl. Environ. Microbiol. 63 (1997) 888-895
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 888-895
-
-
Sobecky, P.1
Mincer, T.2
Chang, M.3
Helinski, D.4
-
76
-
-
0030854615
-
From footprint to toeprint: a close-up of the DnaA box, the binding site for the bacterial initiator protein DnaA
-
Speck C., Weigel C., and Messer W. From footprint to toeprint: a close-up of the DnaA box, the binding site for the bacterial initiator protein DnaA. Nucleic Acids Res. 25 (1997) 3242-3247
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3242-3247
-
-
Speck, C.1
Weigel, C.2
Messer, W.3
-
77
-
-
3242798911
-
Nucleotide sequence and evolution of the five-plasmid complement of the phytopathogen Pseudomonas syringae pv. maculicola ES4326
-
Stavrinides J., and Guttman D.S. Nucleotide sequence and evolution of the five-plasmid complement of the phytopathogen Pseudomonas syringae pv. maculicola ES4326. J. Bacteriol. 186 (2004) 5101-5115
-
(2004)
J. Bacteriol.
, vol.186
, pp. 5101-5115
-
-
Stavrinides, J.1
Guttman, D.S.2
-
78
-
-
0036956704
-
Arthrobacter aurescens TC1 metabolizes diverse s-Triazine ring compounds
-
Strong L.C., Rosendahl C., Johnson G., Sadowsky M.J., and Wackett L.P. Arthrobacter aurescens TC1 metabolizes diverse s-Triazine ring compounds. Appl. Environ. Microbiol. 68 (2002) 5973-5980
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5973-5980
-
-
Strong, L.C.1
Rosendahl, C.2
Johnson, G.3
Sadowsky, M.J.4
Wackett, L.P.5
-
79
-
-
34547832308
-
Antibiotic resistance plasmids
-
Funnell B.E., and Phillips G.J. (Eds), ASM Press, Washington, DC
-
Taylor D.E., Gibreel A., Lawley T.D., and Tracz D.M. Antibiotic resistance plasmids. In: Funnell B.E., and Phillips G.J. (Eds). Plasmid Biology (2004), ASM Press, Washington, DC 473-491
-
(2004)
Plasmid Biology
, pp. 473-491
-
-
Taylor, D.E.1
Gibreel, A.2
Lawley, T.D.3
Tracz, D.M.4
-
80
-
-
0033854944
-
Paradigms of plasmid organization
-
Thomas C.M. Paradigms of plasmid organization. Mol. Microbiol. 37 (2000) 485-491
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 485-491
-
-
Thomas, C.M.1
-
81
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
82
-
-
0003031098
-
Phenotypic traits conferred by plasmids
-
Thomas C.M. (Ed), Harwood Academic Publishing, Amsterdam, The Netherlands
-
Top E.M., Moenne-Loccoz Y., Pembrook T., and Thomas C.M. Phenotypic traits conferred by plasmids. In: Thomas C.M. (Ed). The Horizontal Gene Pool Bacterial Plasmids and Gene Spread (2000), Harwood Academic Publishing, Amsterdam, The Netherlands
-
(2000)
The Horizontal Gene Pool Bacterial Plasmids and Gene Spread
-
-
Top, E.M.1
Moenne-Loccoz, Y.2
Pembrook, T.3
Thomas, C.M.4
-
83
-
-
0038687623
-
Genetic and biochemical characterization of MbeA, the relaxase involved in plasmid ColE1 conjugative mobilization
-
Varsaki A., Lucas M., Afendra A.S., Drainas C., and de la Cruz F. Genetic and biochemical characterization of MbeA, the relaxase involved in plasmid ColE1 conjugative mobilization. Mol. Microbiol. 48 (2003) 481-493
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 481-493
-
-
Varsaki, A.1
Lucas, M.2
Afendra, A.S.3
Drainas, C.4
de la Cruz, F.5
-
84
-
-
33846024759
-
TraA is required for megaplasmid conjugation in Rhodococcus erythropolis AN12
-
Yang J.C., Lassard P.A., Sengupta N., Windsor S.D., O'Brien X.M., Bramucci M., Tomb J.-F., Nagarajan V., and Sinskey A.J. TraA is required for megaplasmid conjugation in Rhodococcus erythropolis AN12. Plasmid 57 (2007) 55-70
-
(2007)
Plasmid
, vol.57
, pp. 55-70
-
-
Yang, J.C.1
Lassard, P.A.2
Sengupta, N.3
Windsor, S.D.4
O'Brien, X.M.5
Bramucci, M.6
Tomb, J.-F.7
Nagarajan, V.8
Sinskey, A.J.9
-
85
-
-
0030955388
-
Altered ParA partition proteins of plasmid P1 act via the partition site to block plasmid propagation
-
Youngren B., and Austin S. Altered ParA partition proteins of plasmid P1 act via the partition site to block plasmid propagation. Mol. Microbiol. 25 (1997) 1023-1030
-
(1997)
Mol. Microbiol.
, vol.25
, pp. 1023-1030
-
-
Youngren, B.1
Austin, S.2
-
86
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
Zdobnov E.M., and Apweiler R. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17 (2001) 847-848
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
87
-
-
39549106346
-
-
Zechner, E.L., de la Cruz, F., Eisenbrandt, R., Grahn, A.M., Koraimann, G., Lanka, E., Muth, G., Pasengrau, W., Thomas, C.M., Wilkins, B.M. Zatyka, M., 2000. Conjugative-DNA transfer processes. In: Thomas, C.M. (Ed.), The Horizontal Gene Pool Bacterial Plasmids and Gene Spread, pp. 87-174.
-
Zechner, E.L., de la Cruz, F., Eisenbrandt, R., Grahn, A.M., Koraimann, G., Lanka, E., Muth, G., Pasengrau, W., Thomas, C.M., Wilkins, B.M. Zatyka, M., 2000. Conjugative-DNA transfer processes. In: Thomas, C.M. (Ed.), The Horizontal Gene Pool Bacterial Plasmids and Gene Spread, pp. 87-174.
-
-
-
-
88
-
-
0030770619
-
The relaxosome protein MobC promotes conjugal plasmid mobilization by extending DNA strand separation to the nick site at the origin of transfer
-
Zhang S., and Meyer R. The relaxosome protein MobC promotes conjugal plasmid mobilization by extending DNA strand separation to the nick site at the origin of transfer. Mol. Microbiol. 25 (1997) 509-516
-
(1997)
Mol. Microbiol.
, vol.25
, pp. 509-516
-
-
Zhang, S.1
Meyer, R.2
-
89
-
-
0036136025
-
Spatial and resource factors influencing high microbial diversity in soil
-
Zhou J., Xia B., Treves D.S., Wu L.-Y., Marsh T.L., O'Neill R.V., Palumbo A.V., and Tiedje J.M. Spatial and resource factors influencing high microbial diversity in soil. Appl. Environ. Microbiol. 68 (2002) 326-334
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 326-334
-
-
Zhou, J.1
Xia, B.2
Treves, D.S.3
Wu, L.-Y.4
Marsh, T.L.5
O'Neill, R.V.6
Palumbo, A.V.7
Tiedje, J.M.8
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