The dosage of chromatin proteins affects transcriptional silencing and DNA repair in Saccharomyces cerevisiae

FEBS Letters

Volumn 582, Issue 4, 2008, Pages 497-502

  Benbow, Sarah Z ^a   DuBois, Michelle L ^a  

^a SEATTLE UNIVERSITY   (United States)

Author keywords

Chromatin remodeling; DNA repair; Saccharomyces cerevisiae; Silencing; Telomere

Indexed keywords

FUNGAL PROTEIN;

ARTICLE; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMATIN STRUCTURE; DIPLOIDY; DNA REPAIR; FUNGAL GENETICS; GENE LOCUS; GENE MUTATION; GENE SILENCING; GENETIC TRANSCRIPTION; HAPLOIDY; HETEROZYGOSITY; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; TELOMERE;

CHROMATIN; DNA REPAIR; GENE DOSAGE; GENE SILENCING; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION, GENETIC;

SACCHAROMYCES CEREVISIAE;

EID: 39149126661     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2008.01.011     Document Type: Article

References (32)

1. Osley M.A., Tsukuda T., and Nickoloff J.A. ATP-dependent chromatin remodeling factors and DNA damage repair. Mutat. Res. 618 (2007) 65-80
2. Saha A., Wittmeyer J., and Cairns B.R. Chromatin remodelling: the industrial revolution of DNA around histones. Nat. Rev. Mol. Cell Biol. 7 (2006) 437-447
3. Costelloe T., FitzGerald J., Murphy N.J., Flaus A., and Lowndes N.F. Chromatin modulation and the DNA damage response. Exp. Cell Res. 312 (2006) 2677-2686
4. Su T.T. Cellular responses to DNA damage: one signal, multiple choices. Ann. Rev. Genet. 40 (2006) 187-208
5. Ebert A., Lein S., Schotta G., and Reuter G. Histone modification and the control of heterochromatic gene silencing in Drosophila. Chromosome Res. 14 (2006) 377-392
6. Schotta G., Ebert A., Dorn R., and Reuter G. Position-effect variegation and the genetic dissection of chromatin regulation in Drosophila. Semin. Cell Develop. Biol. 14 (2003) 67-75
7. Blackburn E.H., and Greider C.W. Telomeres (1995), Cold Spring Harbor Laboratory Press, Plainview, NY
8. Gilson E., and Geli V. How telomeres are replicated. Nat. Rev. Mol. Cell Biol. 8 (2007) 825-838
9. Teixeira M.T., and Gilson E. Telomere maintenance, function and evolution: the yeast paradigm. Chromosome Res. 13 (2005) 535-548
10. van Leeuwen F., and Gottschling D.E. Assays for gene silencing in yeast. Methods Enzymol. 350 (2002) 165-186
11. Gasser S.M., and Cockell M. The molecular biology of SIR proteins. Gene 279 (2001) 1-16
12. Singer M.S., and Gottschling D.E. TLC1: template RNA component of Saccharomyces cerevisiae telomerase. Science 266 (1994) 404-409
13. Wotton D., and Shore D. A novel Rap1p-interacting factor, Rif2p, cooperates with Rif1p to regulate telomere length in Saccharomyces cerevisiae. Genes Dev. 11 (1997) 748-760
14. Brachmann C.B., Davies A., Cost G.J., Caputo E., Li J., Hieter P., and Boeke J.D. Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14 (1998) 115-132
15. Goldstein A.L., and McCusker J.H. Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15 (1999) 1541-1553
16. Burns N., Grimwade B., Ross-Macdonald P.B., Choi E.Y., Finberg K., Roeder G.S., and Snyder M. Large-scale analysis of gene expression, protein localization, and gene disruption in Saccharomyces cerevisiae. Genes Dev. 8 (1994) 1087-1105
17. Siefert H., Chen E., So M., and Heffron F. Shuttle mutagenesis: a method of transposon mutagenesis for Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 83 (1986) 735-739
18. Ochman H., Gerber A., and Hartl D.L. Genetic applications of an inverse polymerase chain reaction. Genetics 120 (1988) 621-623
19. Mizuguchi G., Shen X., Landry J., Wu W.H., Sen S., and Wu C. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303 (2004) 343-348
20. Yu E.Y., Steinberg-Neifach O., Dandjinou A.T., Kang F., Morrison A.J., Shen X., and Lue N.F. Regulation of telomere structure and functions by subunits of the INO80 chromatin remodeling complex. Mol. Cell Biol. 27 (2007) 5639-5649
21. Cuperus G., and Shore D. Restoration of silencing in Saccharomyces cerevisiae by tethering of a novel Sir2-interacting protein, Esc8. Genetics 162 (2002) 633-645
22. Mueller J.E., Li C., and Bryk M. Isw2 regulates gene silencing at the ribosomal DNA locus in Saccharomyces cerevisiae. Biochem. Biophys. Res. Commun. 361 (2007) 1017-1021
23. Iida T., and Araki H. Noncompetitive counteractions of DNA polymerase epsilon and ISW2/yCHRAC for epigenetic inheritance of telomere position effect in Saccharomyces cerevisiae. Mol. Cell Biol. 24 (2004) 217-227
24. Jambunathan N., Martinez A.W., Robert E.C., Agochukwu N.B., Ibos M.E., Dugas S.L., and Donze D. Multiple bromodomain genes are involved in restricting the spread of heterochromatic silencing at the Saccharomyces cerevisiae HMR-tRNA boundary. Genetics 171 (2005) 913-922
25. Askree S.H., et al. A genome-wide screen for Saccharomyces cerevisiae deletion mutants that affect telomere length. Proc. Natl. Acad. Sci. USA 101 (2004) 8658-8663
26. Baetz K.K., Krogan N.J., Emili A., Greenblatt J., and Hieter P. The ctf13-30/CTF13 genomic haploinsufficiency modifier screen identifies the yeast chromatin remodeling complex RSC, which is required for the establishment of sister chromatid cohesion. Mol. Cell Biol. 24 (2004) 1232-1244
27. Bungard D., Reed M., and Winter E. RSC1 and RSC2 are required for expression of mid-late sporulation-specific genes in Saccharomyces cerevisiae. Eukaryot. Cell 3 (2004) 910-918
28. Begley T.J., Rosenbach A.S., Ideker T., and Samson L.D. Damage recovery pathways in Saccharomyces cerevisiae revealed by genomic phenotyping and interactome mapping. Mol. Cancer Res. 1 (2002) 103-112
29. Bennett C.B., Lewis L.K., Karthikeyan G., Lobachev K.S., Jin Y.H., Sterling J.F., Snipe J.R., and Resnick M.A. Genes required for ionizing radiation resistance in yeast. Nat. Genet. 29 (2001) 426-434
30. Rieger K.J., El-Alama M., Stein G., Bradshaw C., Slonimski P.P., and Maundrell K. Chemotyping of yeast mutants using robotics. Yeast 15 (1999) 973-986
31. Boulton S.J., and Jackson S.P. Identification of a Saccharomyces cerevisiae Ku80 homologue: roles in DNA double strand break rejoining and in telomeric maintenance. Nucleic Acids Res. 24 (1996) 4639-4648
32. Birchler J.A., Yao H., and Chudalayandi S. Biological consequences of dosage dependent gene regulatory systems. Biochim. Biophys. Acta 1769 (2007) 422-428