-
1
-
-
18344385508
-
Protein-protein interactions in the eubacterial replisome
-
Schaeffer, P. M., Headlam, M. J. and Dixon, N. E. (2005) Protein-protein interactions in the eubacterial replisome. IUBMB Life 57, 5-12.
-
(2005)
IUBMB Life
, vol.57
, pp. 5-12
-
-
Schaeffer, P.M.1
Headlam, M.J.2
Dixon, N.E.3
-
2
-
-
0037523309
-
The diverse spectrum of sliding clamp interacting proteins
-
Vivona, J. B., and Kelman, Z. (2003) The diverse spectrum of sliding clamp interacting proteins. FEBS Lett. 546, 167-172.
-
(2003)
FEBS Lett.
, vol.546
, pp. 167-172
-
-
Vivona, J.B.1
Kelman, Z.2
-
3
-
-
2542440567
-
Error-prone replication for better or worse
-
Tippin, B., Pham, P., and Goodman, M. F. (2004) Error-prone replication for better or worse. Trends Microbiol. 12, 288-295.
-
(2004)
Trends Microbiol.
, vol.12
, pp. 288-295
-
-
Tippin, B.1
Pham, P.2
Goodman, M.F.3
-
4
-
-
0034666303
-
The DNA replication machine of a Gram-positive organism
-
Bruck, I., and O'Donnell, M. (2000) The DNA replication machine of a Gram-positive organism. J. Biol. Chem. 275, 28971-28983.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 28971-28983
-
-
Bruck, I.1
O'Donnell, M.2
-
5
-
-
0037053286
-
Analysis of a multicomponent thermostable DNA polymerase III replicase from an extreme thermophile
-
Bruck, I., Yuzhakov, A., Yurieva, O., Jeruzalmi, D., Skangalis, M., Kuriyan, J., and O'Donnell, M. (2002) Analysis of a multicomponent thermostable DNA polymerase III replicase from an extreme thermophile. J. Biol. Chem. 277, 17334-17348.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 17334-17348
-
-
Bruck, I.1
Yuzhakov, A.2
Yurieva, O.3
Jeruzalmi, D.4
Skangalis, M.5
Kuriyan, J.6
O'Donnell, M.7
-
6
-
-
0037134533
-
DNA polymerase III holoenzyme from Thermus thermophilus. Identification, expression, purification of components, and use to reconstitute a processive replicase
-
Bullard, J. M., Williams, J. C., Acker, W. K., Jacobi, C., Janjic, N., and McHenry, C. S. (2002) DNA polymerase III holoenzyme from Thermus thermophilus. Identification, expression, purification of components, and use to reconstitute a processive replicase. J. Biol. Chem. 277, 13401-13408.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 13401-13408
-
-
Bullard, J.M.1
Williams, J.C.2
Acker, W.K.3
Jacobi, C.4
Janjic, N.5
McHenry, C.S.6
-
7
-
-
0037066746
-
A three-domain structure for the δ subunit of the DNA polymerase III holoenzyme. δ domain III binds δ′ and assembles into the DnaX complex
-
Bullard, J. M., Pritchard, A. E., Song, M-S., Glover, B. P., Wieczorek, A., Chen, J., Janjic, N., and McHenry, C. S. (2002) A three-domain structure for the δ subunit of the DNA polymerase III holoenzyme. δ domain III binds δ′ and assembles into the DnaX complex. J. Biol. Chem. 277, 13246-13256.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 13246-13256
-
-
Bullard, J.M.1
Pritchard, A.E.2
Song, M.-S.3
Glover, B.P.4
Wieczorek, A.5
Chen, J.6
Janjic, N.7
McHenry, C.S.8
-
8
-
-
14844320052
-
Reconstitution of a minimal DNA replicase from Pseudomonas aeruginosa and stimulation by non-cognate auxiliary factors
-
Jarvis, T. C., Beaudry, A. A., Bullard, J. M., Janjic, N., and McHenry, C. S. (2005) Reconstitution of a minimal DNA replicase from Pseudomonas aeruginosa and stimulation by non-cognate auxiliary factors. J. Biol. Chem. 280, 7890-7900.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 7890-7900
-
-
Jarvis, T.C.1
Beaudry, A.A.2
Bullard, J.M.3
Janjic, N.4
McHenry, C.S.5
-
9
-
-
23044493331
-
Conserved interactions in the Staphylococcus aureus DNA PolC chromosome replication machine
-
Bruck, I., Georgescu, R. E., and O'Donnell, M. (2005) Conserved interactions in the Staphylococcus aureus DNA PolC chromosome replication machine. J. Biol. Chem. 280, 18152-18162.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 18152-18162
-
-
Bruck, I.1
Georgescu, R.E.2
O'Donnell, M.3
-
10
-
-
0036930209
-
Bacillus subtilis τ subunit of DNA polymerase III interacts with bacteriophage SPP1 replicative DNA helicase G40P
-
Martinez-Jimenez, M. I., Mesa, P., and Alonso, J. C. (2002) Bacillus subtilis τ subunit of DNA polymerase III interacts with bacteriophage SPP1 replicative DNA helicase G40P. Nucl. Acids Res. 30, 5056-5064.
-
(2002)
Nucl. Acids Res.
, vol.30
, pp. 5056-5064
-
-
Martinez-Jimenez, M.I.1
Mesa, P.2
Alonso, J.C.3
-
11
-
-
0030878621
-
Conservation of the Escherichia coli dnaX programmed ribosomal frameshift signal in Salmonella typhimurium
-
Blinkova, A., Burkart, M. F., Owens, T. D., and Walker, J. R. (1997) Conservation of the Escherichia coli dnaX programmed ribosomal frameshift signal in Salmonella typhimurium. J. Bacteriol. 179,4438-4442.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 4438-4442
-
-
Blinkova, A.1
Burkart, M.F.2
Owens, T.D.3
Walker, J.R.4
-
12
-
-
0344736717
-
A peptide switch regulates DNA polymerase processivity
-
Lopez de Saro, F. J., Georgescu, R. E., and O'Donnell, M. (2003) A peptide switch regulates DNA polymerase processivity. Proc. Natl. Acad. Sci. USA 100, 14689-14694.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 14689-14694
-
-
De Lopez Saro, F.J.1
Georgescu, R.E.2
O'Donnell, M.3
-
13
-
-
0035941008
-
Two essential DNA polymerases at the bacterial replication fork
-
Dervyn, E., Suski, C., Daniel, R., Bruand, C., Chapuis, J., Errington, J., Janniere, L., and Ehrlich, S. D. (2001) Two essential DNA polymerases at the bacterial replication fork. Science 294, 1716-1719.
-
(2001)
Science
, vol.294
, pp. 1716-1719
-
-
Dervyn, E.1
Suski, C.2
Daniel, R.3
Bruand, C.4
Chapuis, J.5
Errington, J.6
Janniere, L.7
Ehrlich, S.D.8
-
14
-
-
0242666381
-
The essential C family DnaE polymerase is error-prone and efficient at lesion bypass
-
Bruck, I., Goodman, M. F., and O'Donnell, M. (2003) The essential C family DnaE polymerase is error-prone and efficient at lesion bypass. J. Biol. Chem. 278, 44361-44368.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 44361-44368
-
-
Bruck, I.1
Goodman, M.F.2
O'Donnell, M.3
-
15
-
-
0347717893
-
Involvement of DnaE, the second replicative DNA polymerase from Bacillus subtilis, in DNA mutagenesis
-
Le Chatelier, E., Becherel, O. J., D'Alencon, E., Canceill, D., Ehrlich, S. D., Fuchs, R. P. P., and Janniere, L. (2004) Involvement of DnaE, the second replicative DNA polymerase from Bacillus subtilis, in DNA mutagenesis. J. Biol. Chem. 279, 1757-1767.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 1757-1767
-
-
Le Chatelier, E.1
Becherel, O.J.2
D'Alencon, E.3
Canceill, D.4
Ehrlich, S.D.5
Fuchs, R.P.P.6
Janniere, L.7
-
16
-
-
9144264274
-
Defining the position of the switches between replicative and bypass DNA polymerases
-
Fuji, S., and Fuchs, R. P. P. (2004) Defining the position of the switches between replicative and bypass DNA polymerases. EMBO J. 22, 4342-4352.
-
(2004)
EMBO J.
, vol.22
, pp. 4342-4352
-
-
Fuji, S.1
Fuchs, R.P.P.2
-
17
-
-
4043084212
-
Increased dNTP binding affinity reveals a nonprocessive role for Escherichia coli âclamp with DNA polymerase IV
-
Bertam, J., Bloom, L. B., O'Donnell, M., and Goodman, M. F. (2004) Increased dNTP binding affinity reveals a nonprocessive role for Escherichia coli âclamp with DNA polymerase IV. J. Biol. Chem. 279, 33047-33050.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 33047-33050
-
-
Bertam, J.1
Bloom, L.B.2
O'Donnell, M.3
Goodman, M.F.4
-
18
-
-
2442504231
-
Interaction of the sliding clamp β-subunit and Hda, a DnaA-related protein
-
Kurz, M., Dalrymple, B., Wijffels, G., and Kongsuwan, K. (2004) Interaction of the sliding clamp β-subunit and Hda, a DnaA-related protein. J. Bacteriol. 186, 3508-3515.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 3508-3515
-
-
Kurz, M.1
Dalrymple, B.2
Wijffels, G.3
Kongsuwan, K.4
-
19
-
-
3042815929
-
Molecular mechanism for DNA replication-coupled inactivation of the initiator protein in Escherichia coli: Interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex
-
Su'etsugu, M., Takata, M., Kubota, T., Matsuda, Y., and Katayama, T. (2004) Molecular mechanism for DNA replication-coupled inactivation of the initiator protein in Escherichia coli: interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex. Genes Cells 9, 509-522.
-
(2004)
Genes Cells
, vol.9
, pp. 509-522
-
-
Su'Etsugu, M.1
Takata, M.2
Kubota, T.3
Matsuda, Y.4
Katayama, T.5
-
20
-
-
14844288292
-
Protein associations in DnaA-ATP hydrolysis mediated by the replicase clamp-Hda complex
-
Su'etsugu, M., Shimuta, T., Ishida, T., Kawakami, H., and Katayama, T. (2005) Protein associations in DnaA-ATP hydrolysis mediated by the replicase clamp-Hda complex. J. Biol. Chem. 280, 6528-6536.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 6528-6536
-
-
Su'Etsugu, M.1
Shimuta, T.2
Ishida, T.3
Kawakami, H.4
Katayama, T.5
-
21
-
-
0035949599
-
A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems
-
Dalrymple, B. P., Kongsuwan, K., Wijffels, G., Dixon, N. E., and Jennings, P. A. (2001) A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems. Proc. Natl. Acad. Sci. USA 98, 11627-11632.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 11627-11632
-
-
Dalrymple, B.P.1
Kongsuwan, K.2
Wijffels, G.3
Dixon, N.E.4
Jennings, P.A.5
-
22
-
-
0347709578
-
Towards an understanding of protein-protein interaction network hierarchies. Analysis of DnaN (β)-binding peptide motifs in members of protein families interacting with the eubacterial processivity clamp, the β subunit of DNA polymerase III
-
Adelaide, Australia. Conferences in Research and Practice in Information Technology
-
Dalrymple, B. P., Wijffels, G., Kongsuwan, K., and Jennings, P. (2003) Towards an understanding of protein-protein interaction network hierarchies. Analysis of DnaN (β)-binding peptide motifs in members of protein families interacting with the eubacterial processivity clamp, the β subunit of DNA polymerase III. In Proceedings of the First Asia-Pacific Bioinformatics Conference (APBC2003), Adelaide, Australia. Conferences in Research and Practice in Information Technology 19, 153-162.
-
(2003)
Proceedings of the First Asia-Pacific Bioinformatics Conference (APBC2003)
, vol.19
, pp. 153-162
-
-
Dalrymple, B.P.1
Wijffels, G.2
Kongsuwan, K.3
Jennings, P.4
-
23
-
-
0035943399
-
Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III
-
Jeruzalmi, D., Yurieva, O., Zhao, Y., Young, M., Stewart, J., Hingorani, M., O'Donnell, M., and Kuriyan, J. (2001) Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III. Cell 106, 417-428.
-
(2001)
Cell
, vol.106
, pp. 417-428
-
-
Jeruzalmi, D.1
Yurieva, O.2
Zhao, Y.3
Young, M.4
Stewart, J.5
Hingorani, M.6
O'Donnell, M.7
Kuriyan, J.8
-
24
-
-
0030070111
-
A molecular switch in a replication machine defined by an internal competition for protein rings
-
Naktinis, V., Turner, J., and O'Donnell, M. (1996) A molecular switch in a replication machine defined by an internal competition for protein rings. Cell 84, 137-145.
-
(1996)
Cell
, vol.84
, pp. 137-145
-
-
Naktinis, V.1
Turner, J.2
O'Donnell, M.3
-
25
-
-
0037453719
-
DnaE2 polymerase contributes to in vivo survival and the emergence of drug resistance in Mycobacterium tuberculosis
-
Boshoff, H. I. M., Reed, M. B., Barry, C. E., III, and Mizrahi, V. (2003) DnaE2 polymerase contributes to in vivo survival and the emergence of drug resistance in Mycobacterium tuberculosis. Cell 113, 183-193.
-
(2003)
Cell
, vol.113
, pp. 183-193
-
-
Boshoff, H.I.M.1
Reed, M.B.2
Barry III, C.E.3
Mizrahi, V.4
-
26
-
-
0036171550
-
The processivity factor β controls DNA polymerase IV traffic during spontaneous mutagenesis and translesion synthesis in vivo
-
Lenne-Samuel, N., Wagner, J., Etienne, H., and Fuchs, R. P. P. (2002) The processivity factor β controls DNA polymerase IV traffic during spontaneous mutagenesis and translesion synthesis in vivo. EMBO Rep. 3, 45-49.
-
(2002)
EMBO Rep.
, vol.3
, pp. 45-49
-
-
Lenne-Samuel, N.1
Wagner, J.2
Etienne, H.3
Fuchs, R.P.P.4
-
27
-
-
0037019606
-
Pivotal role of the β-clamp in translesion DNA synthesis and mutagenesis in E. coli cells
-
Becherel, O. J., Fuchs, R. P. P., and Wagner, J. (2002) Pivotal role of the β-clamp in translesion DNA synthesis and mutagenesis in E. coli cells. DNA Repair 1, 703-708.
-
(2002)
DNA Repair
, vol.1
, pp. 703-708
-
-
Becherel, O.J.1
Fuchs, R.P.P.2
Wagner, J.3
-
28
-
-
0242389787
-
Structural basis for recruitment of translesion DNA polymerase PolIV/DinB to the β-clamp
-
Bunting, K. A., Roe, S. M., and Pearl, L. H. (2003) Structural basis for recruitment of translesion DNA polymerase PolIV/DinB to the β-clamp. EMBO J. 22, 5883-5892.
-
(2003)
EMBO J.
, vol.22
, pp. 5883-5892
-
-
Bunting, K.A.1
Roe, S.M.2
Pearl, L.H.3
-
29
-
-
0346654081
-
Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competition between replicative and translesion DNA polymerases
-
Burnouf, D. Y., Olieric, V., Wagner, J., Fujii, S., Reinbolt, J., Fuchs, R. P. P., and Dumas, P. (2004) Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competition between replicative and translesion DNA polymerases. J. Mol. Biol. 335, 1187-1197.
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 1187-1197
-
-
Burnouf, D.Y.1
Olieric, V.2
Wagner, J.3
Fujii, S.4
Reinbolt, J.5
Fuchs, R.P.P.6
Dumas, P.7
-
30
-
-
0025809742
-
Mechanism of the sliding β-clamp of DNA polymerase III holoenzyme
-
Stukenberg, P. T., Studwell-Vaughan, P. S., and O'Donnell, M. (1991) Mechanism of the sliding β-clamp of DNA polymerase III holoenzyme. J. Biol. Chem. 266, 11328-11334.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 11328-11334
-
-
Stukenberg, P.T.1
Studwell-Vaughan, P.S.2
O'Donnell, M.3
-
31
-
-
0035902496
-
Interaction of the β sliding clamp with MutS, ligase, and DNA polymerase I
-
Lopez de Saro, F., and O'Donnell, M. (2001) Interaction of the β sliding clamp with MutS, ligase, and DNA polymerase I. Proc. Natl. Acad. Sci. USA 98, 8376-8380.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8376-8380
-
-
De Lopez Saro, F.1
O'Donnell, M.2
-
32
-
-
0033607172
-
The Escherichia coli SOS mutagenesis proteins UmuD and UmuD′ interact physically with the replicative DNA polymerase
-
Sutton, M. D., Opperman, T., and Walker G. C. (1999) The Escherichia coli SOS mutagenesis proteins UmuD and UmuD′ interact physically with the replicative DNA polymerase. Proc. Natl. Acad. Sci. USA 96, 12373-12378.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 12373-12378
-
-
Sutton, M.D.1
Opperman, T.2
Walker, G.C.3
-
33
-
-
0348134870
-
Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair
-
Lopez de Saro, F. J., Georgescu, R. E., Goodman, M. F., and O'Donnell, M. (2003) Competitive processivity-clamp usage by DNA polymerases during DNA replication and repair. EMBO J. 22, 6408-6418.
-
(2003)
EMBO J.
, vol.22
, pp. 6408-6418
-
-
De Lopez Saro, F.J.1
Georgescu, R.E.2
Goodman, M.F.3
O'Donnell, M.4
-
34
-
-
0842281648
-
Identification of specific amino acid residues in the E. coli processivity clamp involved in interactions with DNA polymerase III, UmuD and UmuD
-
Duzen, J. M., Walker, G. C., and Sutton, M. D. (2004) Identification of specific amino acid residues in the E. coli processivity clamp involved in interactions with DNA polymerase III, UmuD and UmuD. DNA Repair 3, 301-312.
-
(2004)
DNA Repair
, vol.3
, pp. 301-312
-
-
Duzen, J.M.1
Walker, G.C.2
Sutton, M.D.3
-
35
-
-
0017259005
-
Purification and characterization of DNA polymerase III from Bacillus subtilis
-
Low, R. L., Rashbaum, S. A., and Cozzarelli, N. R. (1976) Purification and characterization of DNA polymerase III from Bacillus subtilis. J. Biol. Chem. 251, 1311-1325.
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 1311-1325
-
-
Low, R.L.1
Rashbaum, S.A.2
Cozzarelli, N.R.3
-
36
-
-
0034714299
-
Cross-utilization of the β sliding clamp by replicative polymerases of evolutionary divergent organisms
-
Klemperer, N., Zhang, D., Skangalis, M., and O'Donnell, M. (2000) Cross-utilization of the β sliding clamp by replicative polymerases of evolutionary divergent organisms. J. Biol. Chem. 275, 26136-26143.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 26136-26143
-
-
Klemperer, N.1
Zhang, D.2
Skangalis, M.3
O'Donnell, M.4
-
37
-
-
2442507194
-
2 binding proteins
-
2 binding proteins. Biochemistry 43, 5661-5671.
-
(2004)
Biochemistry
, vol.43
, pp. 5661-5671
-
-
Wijffels, G.1
Dalrymple, B.2
Prosselkov, P.3
Kongsuwan, K.4
Epa, V.C.5
Lilley, P.E.6
Jergic, S.7
Buchardt, J.8
Alewood, P.F.9
Jennings, P.10
Dixon, N.E.11
-
38
-
-
0033960153
-
Multiple independent horizontal transfers of informational genes from bactera to plasmids and phages: Implications for the origin of bacterial replication machinery
-
Moreira, D. (2000) Multiple independent horizontal transfers of informational genes from bactera to plasmids and phages: implications for the origin of bacterial replication machinery. Mol. Microbiol. 35, 1-5.
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 1-5
-
-
Moreira, D.1
-
39
-
-
0037178275
-
Damage-repair error-prone polymerases of eubacteria: Association with mobile genome elements
-
Permina, E. A., Mironov, A. A., and Gelfand, M. S. (2002) Damage-repair error-prone polymerases of eubacteria: association with mobile genome elements. Gene 293, 133-140.
-
(2002)
Gene
, vol.293
, pp. 133-140
-
-
Permina, E.A.1
Mironov, A.A.2
Gelfand, M.S.3
|