Development of a quantitative real-time PCR for determination of genotype frequencies for studies in baculovirus population biology

Journal of Virological Methods

Volumn 148, Issue 1-2, 2008, Pages 146-154

  Zwart, Mark P ^a   van Oers, Monique M ^a   Cory, Jenny S ^b   van Lent, Jan W M ^a   van der Werf, Wopke ^a   Vlak, Just M ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b ALGOMA UNIVERSITY   (Canada)

Author keywords

Autographa californica nucleopolyhedrovirus; Bacmids; Genotype frequencies; Quantitative real time PCR

Indexed keywords

ARTICLE; AUTOGRAPHA CALIFORNICA; BACULOVIRUS; BIOASSAY; CONTROLLED STUDY; ELECTRON MICROSCOPY; GENE FREQUENCY; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYHEDROSIS VIRUS; POPULATION BIOLOGY; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; VIRUS NUCLEOCAPSID;

ANIMALS; BIODIVERSITY; GENOTYPE; LARVA; NUCLEOPOLYHEDROVIRUS; ORGANIC CHEMICALS; POLYMERASE CHAIN REACTION; SPODOPTERA;

AUTOGRAPHA CALIFORNICA; AUTOGRAPHA CALIFORNICA NUCLEOPOLYHEDROVIRUS; MIRIDAE; NUCLEOPOLYHEDROVIRUS;

EID: 39149107132     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2007.10.022     Document Type: Article

References (38)

1. Arends H.M., Winstanley D., and Jehle J.A. Virulence and competitiveness of Cydia pomonella granulovirus mutants: parameters that do not match. J. Gen. Virol. 86 (2005) 2731-2738
2. Bianchi F.J.J.A., Snoeijing I., van der Werf W., Mans R.M.W., Smits P.H., and Vlak J.M. J. Invert. Pathol. 75 (2000) 28-35
3. Bull J.C., Godfray H.C.J., and O'Reilly D.R. Persistence of an occlusion-negative recombinant nucleopolyhedrovirus in Trichoplusia ni indicates high multiplicity of cellular infection. App. Environ. Microbiol. 67 (2001) 5204-5209
4. Bull J.C., Godfray H.C.J., and O'Reilly D.R. A few-polyhedra mutant and wild-type nucleopolyhedrovirus remain as a stable polymorphism during serial coinfection in Trichoplusia ni. Appl. Environ. Microbiol. 69 (2003) 2052-2057
5. Carrasco P., Daros J.A., Agudelo-Romero P., and Elena S.F. A real-time RT-PCR assay for quantifying the fitness of tobacco etch virus in competition experiments. J. Virol. Methods 139 (2007) 181-188
6. Cory J.S., Green B.M., Paul R.K., and Hunter-Fujita F. Genotypic and phenotypic diversity of a baculovirus population within an individual insect host. J. Invert. Pathol. 89 (2005) 101-111
7. Erlandson M., Newhouse S., Moore K., Janmaat A., Myers J., and Theilmann D. Characterization of baculovirus isolates from Trichoplusia ni populations from vegetable greenhouses. Biolog. Control 41 (2007) 256-263
8. Federici B.A. Baculovirus Pathogenesis, in The Baculoviruses (1997), Plenum Press, New York
9. Funk C.J., Braunagel S.C., and Rohrman G.F. Baculovirus structure, in The Baculoviruses (1997), Plenum Press, New York
10. Godfray H.C.J., O'Reilly D.R., and Briggs C.J. A model of nucleopolyhedrovirus (NPV) population genetics applied to co-occlusion and the spread of the few polyhedra (FP) phenotype. Proc. Royal Soc. Lond. Ser. B-Biolog. Sci. 264 (1997) 315-322
11. Hajos J.P., Zuidema D., Kulcsar P., Heldens J.G.M., Zavodszky P., and Vlak J.M. Recombination of baculovirus DNA following lipofection of insect larvae. Arch. Virol. 143 (1998) 2045-2050
12. Hitchman R.B., Siaterli E.A., Nixon C.P., and King L.A. Quantitative real-time PCR for rapid and accurate titration of recombinant baculovirus particles. Biotechnol. Bioeng. 96 (2007) 810-814
13. Hughes P.R., and Wood H.A. A synchronous peroral technique for the bioassay of insect viruses. J. Invert. Pathol. 37 (1981) 154-159
14. King L.A., and Possee R.D. The Baculovirus Expression System (1992), University Press, Cambridge, U.K.
15. Knell J.D., and Summers M.D. Investigation of genetic heterogeneity in wild isolates of Spodoptera frugiperda nuclear polyhedrosis virus by restriction endonuclease analysis of plaque-purified variants. Virology 112 (1981) 190-197
16. Kool M., Voncken J.W., van Lier F.L.J., Tramper J., and Vlak J.M. Detection and analysis of Autographa californica nuclear polyhedrosis-virus mutants with defective interfering properties. Virology 183 (1991) 739-746
17. Lee H.H., and Miller L.K. Isolation of genotypic variants of Autographa californica nuclear polyhedrosis virus. J. Virol. 27 (1978) 754-767
18. Lo H.R., and Chao Y.C. Rapid titer determination of baculovirus by quantitative real-time polymerase chain reaction. Biotechnol. Prog. 20 (2004) 354-360
19. Lopez-Ferber M., Simon O., Williams T., and Caballero P. Defective or effective? Mutualistic interactions between virus genotypes. Proc. Royal Soc. Lond. Ser. B-Biolog. Sci. 270 (2003) 2249-2255
20. Luckow V.A., Lee S.C., Barry G.F., and Olins P.O. Efficient generation of Infectious recombinant baculoviruses by site-specific transposon-mediated insertion of foreign genes into a baculovirus genome propagated in Escherichia coli. J. Virol. 67 (1993) 4566-4579
21. Mackay I.M., Arden K.E., and Nitsche A. Real-time PCR in virology. Nucleic Acids Res. 30 (2002) 1292-1305
22. Maeda H., Fujimoto C., Haruki Y., Maeda T., Kokeguchi S., Petelin M., Arai H., Tanimoto I., Nishimura F., and Takashiba S. Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria. Fems Immunol. Med. Microbiol. 39 (2003) 81-86
23. Olkin I., Gleser L.J., and Derman C. Probability Models and Applications (1994), Macmillan, New York
24. Pijlman G.P., van den Born E., Martens D.E., and Vlak J.M. Autographa californica baculoviruses with large genomic deletions are rapidly generated in infected insect cells. Virology 283 (2001) 132-138
25. Pijlman G.P., Dortmans J., Vermeesch A.M.G., Yang K., Martens D.E., Goldbach R.W., and Vlak J.M. Pivotal role of the non-hr origin of DNA replication in the genesis of defective interfering baculoviruses. J. Virol. 76 (2002) 5605-5611
26. Ponchel F., Toomes C., Bransfield K., Leong F.T., Douglas S.H., Field S.L., Bell S.M., Combaret V., Puisieux A., Mighell A.J., Robinson P.A., Inglehearn C.F., Isaacs J.D., and Markham A.F. Real-time PCR based on SYBR-Green I fluorescence: an alternative to the TaqMan assay for a relative quantification of gene rearrangements, gene amplifications and micro gene deletions. BMC Biotechnol. (2003) 3
27. Ravva S.V., and Stanker L.H. Real-time quantitative PCR detection of Mycobacterium avium subsp paratuberculosis and differentiation from other mycobacteria using SYBR Green and TaqMan assays. J. Microbiol. Methods 63 (2005) 305-317
28. Sacristan S., Malpica J.M., Fraile A., and Garcia-Arenal F. Estimation of population bottlenecks during systemic movement of tobacco mosaic virus in tobacco plants. J. Virol. 77 (2003) 9906-99011
29. Schmittgen T.D., Zakrajsek B.A., Mills A.G., Gorn V., Singer M.J., and Reed M.W. Quantitative reverse transcription-polymerase chain reaction to study mRNA decay: comparison of endpoint and real-time methods. Anal. Biochem. 285 (2000) 194-204
30. Simon O., Williams T., Caballero P., and Lopez-Ferber M. Dynamics of deletion genotypes in an experimental insect virus population. Proc. Royal Soc. B-Biolog. Sci. 273 (2006) 783-790
31. Simon O., Williams T., Lopez-Ferber M., and Caballero P. Functional importance of deletion mutant genotypes in an insect nucleopolyhedrovirus population. Appl. Environ. Microbiol. 71 (2005) 4254-4262
32. Smith I.R.L., and Crook N.E. In vivo isolation of baculovirus genotypes. Virology 166 (1988) 240-244
33. Smits P.H., Vandevrie M., and Vlak J.M. Oviposition of Beet Armyworm (Lepidoptera, Noctuidae) on Greenhouse Crops. Environ. Entomol. 15 (1986) 1189-1191
34. Sun X.L., Sun X.C., Bai B.K., van der Werf W., Vlak J.M., and Hu Z.H. Production of polyhedral inclusion bodies from Helicoverpa armigera larvae infected with wild-type and recombinant HaSNPV. Biocontrol Sci. Technol. 15 (2005) 353-366
35. Theilmann D.A., Bissard G.W., Bonning B., Jehle J., O'Reilly D.R., Rohrmann G.F., Thiem S., and Vlak J.M. Baculoviridae. In: Fauquet C.M., Mayo M.A., Maniloff J., Desselberger U., and Ball L.A. (Eds). Virus Taxonomy - Eighth Report of the International Committee on Taxonomy of Viruses (2005), Springer, New York pp. 1129-1185
36. Vail P.V., Sutter G., Jay D.L., and Gough D. Reciprocal infectivity of nuclear polyhedrosis viruses of cabbage looper and alfalfa looper. J. Invert. Pathol. 17 (1971) 383-388
37. van Lent J., Wellink J., and Goldbach R. Evidence for the involvement of the 58 and 48 k proteins in the intercellular movement of cowpea mosaic-virus. J. Gen. Virol. 71 (1990) 219-223
38. Yin J.L., Shackel N.A., Zekry A., McGuinness P.H., Richards C., Van der Putten K., McCaughan G.W., Eris J.M., and Bishop G.A. Real-time reverse transcriptase-polymerase chain reaction (RT-PCR) for measurement of cytokine and growth factor mRNA expression with fluorogenic probes or SYBR Green I. Immunol. Cell Biol. 79 (2001) 213-221