Identification of strains assigned to the genus Asaia Yamada et al. 2000 based on 16S rDNA restriction analysis

Journal of General and Applied Microbiology

Volumn 52, Issue 4, 2006, Pages 241-247

  Yukphan, Pattaraporn ^a   Malimas, Taweesak ^a   Takahashi, Mai ^b   Kaneyasu, Mika ^b   Potacharoen, Wanchern ^a   Tanasupawat, Somboon ^c   Nakagawa, Yasuyoshi ^b   Tanticharoen, Morakot ^a   Yamada, Yuzo ^a,d,e,f  

^a NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

^b NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

^c CHULALONGKORN UNIVERSITY   (Thailand)

^d JAPAN INTERNATIONAL COOPERATION AGENCY   (Japan)

^e SHIZUOKA UNIVERSITY   (Japan)

^f TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

Author keywords

Proteobacteria; 16S rDNA sequences; Acetic acid bacteria; Asaia; Restriction analysis; Taxonomy

Indexed keywords

BACTERIAL DNA; DNA 16S; ENDONUCLEASE; RIBOSOME DNA;

ACETOBACTER ACETI; ACETOBACTERACEAE; ACIDOMONAS METHANOLICA; ARTICLE; ASAIA; ASAIA BOGORENSIS; ASAIA KRUNGTHEPENSIS; ASAIA SIAMENSIS; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GLUCONACETOBACTER LIQUEFACIENS; GLUCONOBACTER OXYDANS; GRAM NEGATIVE BACTERIUM; KOZAKIA BALIENSIS; NEOASAIA CHIANGMAIENSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; RESTRICTION MAPPING; SEQUENCE HOMOLOGY; STRAIN IDENTIFICATION; SWAMINATHANIA SALITOLERANS; TAXONOMIC IDENTIFICATION; CLASSIFICATION; GENETICS; METHODOLOGY; PHYLOGENY;

ALPHAPROTEOBACTERIA; ASAIA;

ACETOBACTERACEAE; DNA, RIBOSOMAL; PHYLOGENY; RESTRICTION MAPPING;

EID: 39049181082     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.52.241     Document Type: Article

References (15)

1. Brosius, J., Dull, T. J., Sleeter, D. D., and Noller, H. F. (1981) Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol., 148, 107-127.
2. Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
3. Katsura, K., Kawasaki, H., Potacharoen, W., Saono, S., Seki, T., Yamada, Y., Uchimura, T., and Komagata, K. (2001) Asaia siamensis sp. nov., an acetic acid bacterium in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol., 51, 559-563.
4. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol., 16, 111-120.
5. Malimas, T., Yukphan, P., Takahashi, M., Potacharoen, W., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2006) Heterogeneity of strains assigned to Gluconobacter frateurii Mason and Claus 1989 based on restriction analysis of 16S-23S rDNA internal transcribed spacer regions. Biosci. Biotechnol. Biochem., 70, 684-690.
6. Saitou, N. and Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
7. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
8. Yamada, Y., Katsura, K., Kawasaki, H., Widyastuti, Y., Saono, S., Seki, T., Uchimura, T., and Komagata, K. (2000) Asaia bogorensis gen. nov., sp. nov., an unusual acetic acid bacterium in the α- Proteobacteria. Int. J. Syst Evol. Microbiol., 50, 823-829.
9. Yukphan, R., Malimas, T., Potacharoen, W., Tanasupawat, S., Tanticharoen, M., and Yamada, Y. (2005a) Neoasaia chiangmaiensis gen. nov., sp. nov., a novel osmotolerant acetic acid bacterium in the α-Proteobacteria. J. Gen. Appl. Microbiol., 51, 301-311.
10. Yukphan, P., Malimas, T., Potacharoen, W., Tanasupawat, S., Tanticharoen, M., and Yamada, Y. (2006) Identification of strains assigned to the genus Asaia Yamada et al. 2000 based on restriction analysis of 16S-23S rDNA internal transcribed spacer regions. J. Gen. Appl. Microbiol., 52, 55-62.
11. Yukphan, P., Malimas, T., Takahashi, M., Potacharoen, W., Busabun, T., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2004a) Re-identification of Gluconobacter strains based on restriction analysis of 16S-23S rDNA internal transcribed spacer regions. J. Gen. Appl. Microbiol., 50, 189-195.
12. Yukphan, P., Potacharoen, W., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2004b) Identification of strains assigned to the genus Gluconbacter Asai 1935 based on the sequence and the restriction analyses of the 16S-23S rDN internal transcribed spacer regions. J. Gen. Appl. Microbiol., 50, 9-15.
13. Yukphan, P., Potacharoen, W., Tanasupawat, S., Tanticharoen, M., and Yamada, Y. (2004c) Asaia krungthepensis sp. nov., an acetic acid bacterium in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol., 54, 313-316.
14. Yukphan, P., Takahashi, M., Potacharoen, W., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2004d) Gluconobacter albidus (ex Kondo and Ameyama 1958) sp. nov., nom rev., an acetic acid bacterium in the α-Proteobacteria. J. Gen. Appl. Microbiol., 50, 235-242.
15. Yukphan, P., Takahashi, M., Potacharoen, W., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2005b) Gluconobacter albidus (ex Kondo and Ameyama 1958) Yukphan et al. 2005. In Validation of publication of new names and new combinations previously published outside the IJSEM, Validation List no. 103. Int. J. Syst. Evol. Microbiol., 55, 983-985.