Identification of strains assigned to the genus Asaia Yamada et al. 2000 based on restriction analysis of 16S-23S rDNA internal transcribed spacer regions

Journal of General and Applied Microbiology

Volumn 52, Issue 1, 2006, Pages 55-62

  Yukphan, Pattaraporn ^a   Malimas, Taweesak ^a   Potacharoen, Wanchern ^a   Tanasupawat, Somboon ^b   Tanticharoen, Morakot ^a   Yamada, Yuzo ^a,c,d,e  

^a NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

^b CHULALONGKORN UNIVERSITY   (Thailand)

^c JAPAN INTERNATIONAL COOPERATION AGENCY   (Japan)

^d SHIZUOKA UNIVERSITY   (Japan)

^e TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

Author keywords

16S 23S rDNA ITS sequences; Acetic acid bacteria; Asaia bogorensis; Asaia krungthepensis; Asaia siamensis; Restriction analysis; Taxonomy

Indexed keywords

DNA 16S; DNA 23S; INTERNAL TRANSCRIBED SPACER;

ACETOBACTERACEAE; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA EXTRACTION; DNA SEQUENCE; GENE ASSIGNMENT; GENE CONSTRUCT; GENETIC IDENTIFICATION; GENETIC SIMILARITY; GENETIC STRAIN; GLUCONOBACTER; MICROBIAL DIVERSITY; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; RESTRICTION MAPPING; SEQUENCE ANALYSIS; SEQUENCE DATABASE; SPECIES IDENTIFICATION;

ACETOBACTERACEAE; ASAIA; ASAIA BOGORENSIS; ASAIA KRUNGTHEPENSIS; ASAIA SIAMENSIS; BACTERIA (MICROORGANISMS); GLUCONOBACTER;

EID: 33645684337     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.52.55     Document Type: Article

References (16)

1. Asai, T., Iizuka, H., and Komagata, K. (1964) The flagellation and taxonomy of genera Gluconobacter and Acetobacter with reference to the existence of intermediate strains. J. Gen. Appl. Microbiol., 10, 95-126.
2. Felsenstein, J. (1985) Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791.
3. Katsura, K., Kawasaki, H., Potacharoen, W., Saono, S., Seki, T., Yamada, Y., Uchimura, T., and Komagata, K. (2001) Asaia siamensis sp. nov., an acetic acid bacterium in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol., 51, 559-563.
4. Lisdiyanti, P., Kawasaki, H., Widyastuti, Y., Saono, S., Seki, T., Yamada, Y., Uchimura, T., and Komagata, K. (2002) Kozakaia baliensis gen. nov., sp. nov., a novel acetic acid bacterium in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol., 52, 813-818.
5. Malimas, T., Yukphan, P., Takahashi, M., Potacharoen, W., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2006) Heterogeneity of strains assigned to Gluconobacter frateurii Mason and Claus 1989 based on restriction analysis of 16S-23S rDNA internal transcribed spacer regions. Biosci. Biotehnol. Biochem., 70, 684-690.
6. Saitou, N. and Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
7. Trček, J. and Teuber, M. (2002) Genetic and restriction analysis of the 16S-23S rDNA internal transcribed spacer regions of the acetic acid bacteria. FEMS Microbiol. Lett., 208, 69-75.
8. Verlander, C. P. (1992) Detection of horseradish peroxidase by colorimetry. In Nonisotopic DNA Probe Techniques, ed. by Kricka, L. J., Academic Press, New York, pp. 185-201.
9. Yamada, Y., Hosono, R., Lisdiyanti, P., Widyastuti, Y., Saono, S., Uchimura, T., and Komagata, K. (1999) Identification of acetic acid bacteria isolated from Indonesian sources, especially of isolates classified in the genus Gluconobacter. J. Gen. Appl. Microbiol., 45, 23-28.
10. Yamada, Y., Katsura, K., Kawasaki, H., Widyastuti, Y., Saono, S., Seki, T., Uchimura, T., and Komagata, K. (2000) Asaia bogorensis gen. nov., sp. nov., an unusual acetic acid bacterium in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol., 50, 823-829.
11. Yamada, Y., Okada, Y., and Kondo, K. (1976) Isolation and characterization of "polarly flagellated intermediate strains" in acetic acid bacteria. J. Gen. Appl. Microbiol., 22, 237-245.
12. Yukphan, P., Malimas, T., Potacharoen, W., Tanasupawat, S., Tanticharoen, M., and Yamada, Y. (2005) Neoasaia chiangmaiensis gen. nov., sp. nov., a novel osmotolerant acetic acid bacterium in the α-Proteobacteria. J. Gen. Appl. Microbiol., 51, 301-311.
13. Yukphan, P., Malimas, T., Takahashi, M., Potacharoen, W., Busabun, T., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2004a) Re-identification of Gluconobacter strains based on restriction analysis of 16S-23S rDNA internal transcribed spacer regions. J. Gen. Appl. Microbiol., 50, 189-195.
14. Yukphan, P., Potacharoen, W., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2004b) Identification of strains assigned to the genus Gluconobacter Asai 1935 based on the sequence and the restriction analyses of the 16S-23S rDNA internal transcribed spacer regions. J. Gen. Appl. Microbiol., 50, 9-15.
15. Yukphan, P., Potacharoen, W., Tanasupawat, S., Tanticharoen, M., and Yamada, Y. (2004c) Asaia krungthepensis sp. nov., an acetic acid bacterium in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol., 54, 313-316.
16. Yukphan, P., Takahashi, M., Potacharoen, W., Tanasupawat, S., Nakagawa, Y., Tanticharoen, M., and Yamada, Y. (2004d) Gluconobacter albidus (ex Kondo and Ameyama 1958) sp. nov., nom. rev., an acetic acid bacterium in the α-Proteobacteria. J. Gen. Appl. Microbiol., 50, 235-242.