메뉴 건너뛰기




Volumn 15, Issue 4, 1997, Pages 331-335

Enhanced discrimination of single nucleotide polymorphisms by artificial mismatch hybridization

Author keywords

3 nitropyrrole; Fluorescence; PCR; Specificity

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; DNA POLYMORPHISM; GENE INSERTION; GENE LOCUS; HLA SYSTEM; MOLECULAR RECOGNITION; NONHUMAN; NUCLEOTIDE METABOLISM; POINT MUTATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

EID: 0030939593     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt0497-331     Document Type: Article
Times cited : (116)

References (26)
  • 1
    • 0019887733 scopus 로고
    • The use of synthetic oligonucleotides as hybridization probes. Hybridization of oligonucleotides of mixed sequence to rabbit ß-globin DNA
    • Wallace, B.R., Johnson, M.J., Hirose, T., Miyake, T., Kawashima, E.H., and Itakura, K. 1981. The use of synthetic oligonucleotides as hybridization probes. Hybridization of oligonucleotides of mixed sequence to rabbit ß-globin DNA. Nucl. Acids Res. 9:879-894.
    • (1981) Nucl. Acids Res , vol.9 , pp. 879-894
    • Wallace, B.R.1    Johnson, M.J.2    Hirose, T.3    Miyake, T.4    Kawashima, E.H.5    Itakura, K.6
  • 3
    • 0023088933 scopus 로고
    • Dissociation kinetics of 19 base paired oligonucleotlde-DNA duplexes containing different single mismatch base pair
    • Ikuta, S., Takagi, K., Wallace, B.R., and Itakura, K. 1987. Dissociation kinetics of 19 base paired oligonucleotlde-DNA duplexes containing different single mismatch base pair. Nucl. Acids Res. 15:797-811.
    • (1987) Nucl. Acids Res , vol.15 , pp. 797-811
    • Ikuta, S.1    Takagi, K.2    Wallace, B.R.3    Itakura, K.4
  • 4
    • 0028933039 scopus 로고
    • Optical melting of 128 octamer DNA duplexes effects of base pair location and nearest neighbors on thermal stability
    • Doktycz, M.J., Morris, M.D., Dormady, S.J., Beattle, K.L, and Jacobson, K.B. 1995. Optical melting of 128 octamer DNA duplexes effects of base pair location and nearest neighbors on thermal stability. J. Biol. Chem. 270:8439-8445.
    • (1995) J. Biol. Chem , vol.270 , pp. 8439-8445
    • Doktycz, M.J.1    Morris, M.D.2    Dormady, S.J.3    Beattle, K.L.4    Jacobson, K.B.5
  • 5
    • 0028241481 scopus 로고
    • Arrays of complementary oligonucleotides for analysing the hybridisation behaviour of nucleic acids
    • Southern, E.M., Case-Green, S.C., Elder, J.K., Johnson, M., Mir, K.U., Wang, L, et al. 1994. Arrays of complementary oligonucleotides for analysing the hybridisation behaviour of nucleic acids. Nucl. Acids Res. 22:1368-1373.
    • (1994) Nucl. Acids Res , vol.22 , pp. 1368-1373
    • Southern, E.M.1    Case-Green, S.C.2    Elder, J.K.3    Johnson, M.4    Mir, K.U.5    Wang, L.6
  • 6
    • 0001442557 scopus 로고
    • Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes
    • Saiki, R.K., Walsh, P.S., Levenson, C.H., and Erlich, H.A. 1989. Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes. Proc. Natl. Acad. Scl. USA 86:6230-6234.
    • (1989) Proc. Natl. Acad. Scl. USA , vol.86 , pp. 6230-6234
    • Saiki, R.K.1    Walsh, P.S.2    Levenson, C.H.3    Erlich, H.A.4
  • 8
    • 0025322528 scopus 로고
    • Sequence-dependent oligo-nucleotide-target duplex stabilities: Rules from empirical studies with a set of twenty-mers
    • McGraw, R.A., Steffe, E.K., and Baxter, S.M. 1990. Sequence-dependent oligo-nucleotide-target duplex stabilities: rules from empirical studies with a set of twenty-mers. BioTechnlques 8:674-678.
    • (1990) Biotechnlques , vol.8 , pp. 674-678
    • McGraw, R.A.1    Steffe, E.K.2    Baxter, S.M.3
  • 9
    • 0021762950 scopus 로고
    • The effect of single base-pair mismatches on the duplex stability of d(T-A-T-T-A-A-T-A-T-C-A-A-G-T-T-G). d(C-A-A-C-T-T-G-A-T-A-T-T-A-A-T-A)
    • Tibanyenda, N., De Bruin, S.H., Haasnoot, C.A.G., Van der Marel, G.A., Van Boom, J.H., and Hilers, C.W. 1984. The effect of single base-pair mismatches on the duplex stability of d(T-A-T-T-A-A-T-A-T-C-A-A-G-T-T-G). d(C-A-A-C-T-T-G-A-T-A-T-T-A-A-T-A). Eur. J. Biochem. 138:19-27.
    • (1984) Eur. J. Biochem , vol.138 , pp. 19-27
    • Tibanyenda, N.1    De Bruin, S.H.2    Haasnoot, C.A.G.3    Van Der Marel, G.A.4    Van Boom, J.H.5    Hilers, C.W.6
  • 10
    • 0022580389 scopus 로고
    • Mismatches in DNA double strands: Thermodynamic parameters and their correlation to repair differencies
    • Werntges, H., Stager, G., Riesner, D., and Fritz, H.-J. 1986. Mismatches in DNA double strands: thermodynamic parameters and their correlation to repair differencies. Nucl. Acids Res. 14:3773-3790.
    • (1986) Nucl. Acids Res , vol.14 , pp. 3773-3790
    • Werntges, H.1    Stager, G.2    Riesner, D.3    Fritz, H.-J.4
  • 11
    • 0025869153 scopus 로고
    • Analysis of apolipoprotein E genotypes by the amplification refractory mutation system
    • Wenham, R.R., Newton, C.R., and Price, W.H. 1991. Analysis of apolipoprotein E genotypes by the amplification refractory mutation system. Clin. Chem. 37:241-244.
    • (1991) Clin. Chem , vol.37 , pp. 241-244
    • Wenham, R.R.1    Newton, C.R.2    Price, W.H.3
  • 12
    • 0024605518 scopus 로고
    • Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS)
    • Newton, C.R., Graham, A., Heptinstall, L.E., Powell, S.J., Summers, C, Kalsheker, N., et al. 1989. Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS). Nucl. Acids Res. 17:2503-2516.
    • (1989) Nucl. Acids Res , vol.17 , pp. 2503-2516
    • Newton, C.R.1    Graham, A.2    Heptinstall, L.E.3    Powell, S.J.4    Summers, C.5    Kalsheker, N.6
  • 13
    • 0028965944 scopus 로고
    • Sequence-based typing of HLA-A2 alleles using a primer with an extra base mismatch
    • Ishikawa, Y., Tokunaga, K., Kashiwase, K., Akaza, T, Tadokoro, K., and Juji, T. 1995. Sequence-based typing of HLA-A2 alleles using a primer with an extra base mismatch. Hum. Immunol. 42:315-318.
    • (1995) Hum. Immunol , vol.42 , pp. 315-318
    • Ishikawa, Y.1    Tokunaga, K.2    Kashiwase, K.3    Akaza, T.4    Tadokoro, K.5    Juji, T.6
  • 14
    • 0028245297 scopus 로고
    • A universal nucleoside for use at ambiguous sites in DNA primers
    • Nichols, R., Andrews, P.C., Zhang, P., and Bergstorm, D.E. 1994. A universal nucleoside for use at ambiguous sites in DNA primers. Nature 369:492-493.
    • (1994) Nature , vol.369 , pp. 492-493
    • Nichols, R.1    Rews, P.C.2    Zhang, P.3    Bergstorm, D.E.4
  • 15
    • 0028886761 scopus 로고
    • Synthesis, structure, and deoxyribonucleoic acid sequencing with a universal nucleoside: 1-(2’-Deoxy-B-D-ribofuranosyl)-3-nitropyrrole
    • Bergstorm, D.E., Zhang, P., Toma, P.H., Andrews, P.C., and Nichols, R. 1995. Synthesis, structure, and deoxyribonucleoic acid sequencing with a universal nucleoside: 1-(2’-Deoxy-B-D-ribofuranosyl)-3-nitropyrrole. J. Am. Chem. Soc. 117:1201-1209.
    • (1995) J. Am. Chem. Soc , vol.117 , pp. 1201-1209
    • Bergstorm, D.E.1    Zhang, P.2    Toma, P.H.3    Rews, P.C.4    Nichols, R.5
  • 16
    • 0028084487 scopus 로고
    • Combinational chemistry-applications of light-directed chemical synthesis
    • Jacobs J.W. and Fodor, S.P.A. 1994. Combinational chemistry-applications of light-directed chemical synthesis. TIBTECH 12:19-26.
    • (1994) TIBTECH , vol.12 , pp. 19-26
    • Jacobs, J.W.1    Fodor, S.P.A.2
  • 17
    • 0026621730 scopus 로고
    • Very stable mismatch duplexes: Structural and thermodynamic studies on tandem G.A mismatches in DNA
    • Ebel, S., Lane, A.N., and Brown, T. 1992. Very stable mismatch duplexes: structural and thermodynamic studies on tandem G.A mismatches in DNA. Biochemistry 31:12083-12086.
    • (1992) Biochemistry , vol.31 , pp. 12083-12086
    • Ebel, S.1    Lane, A.N.2    Brown, T.3
  • 18
    • 0025018374 scopus 로고
    • Structural and thermodynamic studies on the adenine/guanine mismatch in B-DNA
    • Leonard, G.A., Booth, E.D., and Brown, T. 1990. Structural and thermodynamic studies on the adenine/guanine mismatch in B-DNA. Nucl. Acids Res. 18:5617-5623.
    • (1990) Nucl. Acids Res , vol.18 , pp. 5617-5623
    • Leonard, G.A.1    Booth, E.D.2    Brown, T.3
  • 19
    • 0027442905 scopus 로고
    • Influence of nearest neighbor sequence on the stability of base pair mismatches in long DNA: Determination by temperature-gradient gel electrophoresis
    • Ke, S.-H. and Wartell, R.M. 1993. Influence of nearest neighbor sequence on the stability of base pair mismatches in long DNA: determination by temperature-gradient gel electrophoresis. Nucl. Acids Res. 21:5137-5143.
    • (1993) Nucl. Acids Res , vol.21 , pp. 5137-5143
    • Ke, S.-H.1    Wartell, R.M.2
  • 20
    • 0028618275 scopus 로고
    • Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports
    • Guo, Z., Guilfoyle, R.A., Thiel, A.J., Wang, R., and Smith, L.M. 1994. Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucl. Acids Res. 22:5456-5465.
    • (1994) Nucl. Acids Res , vol.22 , pp. 5456-5465
    • Guo, Z.1    Guilfoyle, R.A.2    Thiel, A.J.3    Wang, R.4    Smith, L.M.5
  • 21
    • 0026518599 scopus 로고
    • Rapid HLA-DRB1 genotyping by nested PCR amplification
    • Beln, G., Glaser, R., and Kirchner, H. 1992. Rapid HLA-DRB1 genotyping by nested PCR amplification. Tissue Antigens 39:68-73.
    • (1992) Tissue Antigens , vol.39 , pp. 68-73
    • Beln, G.1    Glaser, R.2    Kirchner, H.3
  • 22
    • 0026691249 scopus 로고
    • HLA-DR typing by PCR amplification with sequence-specific primers (PCR-SSP) in 2 hours: An alternative to serological DR typing in clinical practice Including donor-recipient matching In cadaveric transplantation
    • Olerup, O. and Zetterquist, H. 1992. HLA-DR typing by PCR amplification with sequence-specific primers (PCR-SSP) in 2 hours: an alternative to serological DR typing in clinical practice Including donor-recipient matching In cadaveric transplantation. Tissue Antigens 39:225-235.
    • (1992) Tissue Antigens , vol.39 , pp. 225-235
    • Olerup, O.1    Zetterquist, H.2
  • 24
    • 0023610359 scopus 로고
    • The synthesis and use of fluorescent oligonucleotides in DNA sequence analysis
    • Smith, L.M., Kaiser, R.J., Sanders, J.Z., and Hood, L.E. 1987. The synthesis and use of fluorescent oligonucleotides in DNA sequence analysis. Methods Enzymol. 55:260-301.
    • (1987) Methods Enzymol , vol.55 , pp. 260-301
    • Smith, L.M.1    Kaiser, R.J.2    Sanders, J.Z.3    Hood, L.E.4
  • 25
    • 0024312964 scopus 로고
    • HLA gene amplification and hybridization analysis of polymorphism. HLA matching for bone marrow transplantation of a patent with HLA deficient severe combined immundeficiency syndrome
    • Baxter-Lowe, L, Hunter, J., Casper J., and Gorski, J. 1989. HLA gene amplification and hybridization analysis of polymorphism. HLA matching for bone marrow transplantation of a patent with HLA deficient severe combined immundeficiency syndrome. J. Clin. Invest. 84:613-618.
    • (1989) J. Clin. Invest , vol.84 , pp. 613-618
    • Baxter-Lowe, L.1    Hunter, J.2    Casper, J.3    Gorski, J.4
  • 26
    • 0026587834 scopus 로고
    • Nomenclature for factors of the HLA System
    • Bodmer, J., Marsh, S., and Albert, E. 1992. Nomenclature for factors of the HLA System. Tissue Antigens 39:161-173.
    • (1992) Tissue Antigens , vol.39 , pp. 161-173
    • Bodmer, J.1    Marsh, S.2    Albert, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.