Worldwide phylogeny of Lactarius section Deliciosi inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences

Mycologia

Volumn 99, Issue 6, 2007, Pages 820-832

  Nuytinck, Jorinde ^a   Verbeken, Annemieke ^a   Miller, Steven L ^b  

^a GHENT UNIVERSITY   (Belgium)

^b UNIVERSITY OF WYOMING   (United States)

Author keywords

Dapetes; L. deliciosus; L. porninsis; Russulales

Indexed keywords

FUNGAL DNA; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; RIBOSOMAL SPACER DNA;

BIOGEOGRAPHY; ENZYME; GENE EXPRESSION; GENETIC ANALYSIS; MORPHOLOGY; MUSHROOM; NEW SPECIES; PHYLOGENETICS; PHYLOGENY; TAXONOMY;

ARTICLE; ASIA; BASIDIOMYCETES; CENTRAL AMERICA; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; EUROPE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NORTH AMERICA; PHYLOGENY; SEQUENCE HOMOLOGY;

ASIA; BASIDIOMYCOTA; CENTRAL AMERICA; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; EUROPE; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASES; MOLECULAR SEQUENCE DATA; NORTH AMERICA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

AGARICALES; LACTARIUS; LACTARIUS DELICIOSUS; LACTARIUS PORNINSIS;

EID: 38849122576     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/mycologia.99.6.820     Document Type: Article

References (50)

1. Álvarez I, Wendel JF. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet Evol 29:417-434.
2. Basso MT. 1999. Lactarius Pers. Fungi Europei. 8th ed. Alassio: Mycoflora. 845 p.
3. Berbee ML, Pirseyedi M, Hubbard S. 1999. Cochliobolus phylogenetics and the origin of known, highly virulent pathogens, inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences. Mycologia 91:964-977.
4. Bon M. 1980. Clé monographique du genre Lactarius. Doc Mycol 10(40):1-85.
5. Chapela IH, Garbelotto M. 2004. Phylogeography and evolution in matsutake and close allies inferred by analyses of ITS sequences and AFLPs. Mycologia 96:730-741.
6. Desjardin DE. 2003. A unique ballistosporic hypogeous sequestrate Lactarius from California. Mycologia 95:148-155.
7. Eberhardt U, Verbeken A. 2004. Sequestrate Lactarius species from tropical Africa: L. angiocarpus sp. nov. and L. dolichocaulis comb. nov. Mycol Res 108:1042-1052.
8. Ewing B, Green P. 1998. Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res 8:186-194.
9. _, Hillier L, Wendl MC, Green P. 1998. Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res 8:175-185.
10. Farris JS, Källersjö M, Kluge AG, Bult C. 1995. Constructing a significance test for incongruence. Syst Biol 44:570-572.
11. Figge RM, Schubert M, Brinkmann H, Cerff R. 1999. Glyceraldehyde-3- phosphate dehydrogenase gene diversity in eubacteria and eukaryotes: evidence for intra- and inter-kingdom gene transfer. Molec Biol Evol 16:429-440.
12. Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol 2:113-118.
13. Gulden G, Jenssen KM, Stordal J. 1988. Arctic and alpine fungi 2. Oslo, 58 p.
14. Heilmann-Clausen J, Verbeken A, Vesterholt J. 1998. The genus Lactarius. Fungi of Northern Europe. 2nd ed. Svampetryk: Danish Mycological Society, Denmark. 285 p.
15. Hesler LR, Smith AH. 1960. Studies on Lactarius I. The North American species of sect. Lactarius. Brittonia 12:119-139.
16. _. 1979. North American species of Lactarius. Ann Arbor: University of Michigan Press. 841 p.
17. Hibbett DS, Donoghue MJ. 2001. Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in Homobasidiomycetes. Syst Biol 50:215-242.
18. _, Hansen K, Michael JD. 1998. Phylogeny and biogeography of Lentinula inferred from an expanded rDNA dataset. Mycol Res 102:1041-1049.
19. _, Vilgalys R. 1993. Phylogenetic relationships of Lentinus (Basidiomycotina) inferred from molecular and morphological characters. Syst Bot 18:409-433.
20. Hillis DM, Huelsenbeck JP. 1992. Signal, noise, and reliability in molecular phylogenetic analyses. J Heredity 83:189-195.
21. Hongo T, Yokoyama K. 1978. Mycofloristic ties of Japan to the continents. Mem Shiga Univ, Faculty Arts Sc 26:76-80.
22. Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
23. Imazeki R, Otani Y, Hongo T. 1988. Fungi of Japan. Tokyo: Yama-Kei Publishers Co. Ltd. 623 p.
24. Knudsen H, Borgen T. 1994. The Lactarius torminosus-group in Greenland. Mycol Helv 2:49-56.
25. Kreuzinger N, Podeu R, Gruber F, Göbl F, Kubicek CP. 1996. Identification of some ectomycorrhizal basidiomycetes by PCR amplification of their gpd (glyceraldehyde-3-phosphate dehydrogenase) genes. App Environ Microbiol 62:3432-3438.
26. Kytövuori I. 1984. Lactarius subsection Scrobiculati in NW Europe. Karstenia 24:41-72.
27. Mason-Gamer RJ, Kellogg EA. 1996. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Syst Biol 45:524-545.
28. Methven AS. 1997. The Agaricales (Gilled Fungi) of California 10. Russulaceae II. Lactarius. Eureka, California: Mad River Press. 78 p.
29. Miller SL, McClean TM, Walker JF, Buyck B. 2001. A molecular phylogeny of the Russulales including agaricoid, gasteroid and pleurotoid taxa. Mycologia 93:344-351.
30. Montoya L, Bandala VM. 2004. Lactarius subgenus Piperites: a new species and a new name. Mycotaxon 89:47-54.
31. Nuytinck J. 2005. Lactarius section Deliciosi (Russulales, Basidiomycota) and its ectomycorrhiza: a morphological and molecular approach [Doctoral dissertation]. Ghent, Belgium: Ghent University. 257 p.
32. _, Verbeken A. 2003. Lactarius sanguifluus versus Lactarius vinosus - molecular and morphological analyses. Mycol Prog 2:227-234.
33. _. 2005. Morphology and taxonomy of the European species in Lactarius sect. Deliciosi (Russu-Russulales). Mycotaxon 92:125-168.
34. _, Delarue S, Walleyn R. 2003. Systematics of European sequestrate lactarioid Russulaceae with spiny spore ornamentation. Belg J Bot 136:145-153.
35. _, Miller SL, Verbeken A. 2006a. A taxonomical treatment of the North and Central American species in Lactarius sect. Deliciosi. Mycotaxon 96:261-307.
36. _, Wang XH, _. 2006b. Descriptions and taxonomy of the Asian representatives of Lactarius sect. Deliciosi. Fung Divers 22:171-203.
37. Peter M, Buchler U, Ayer F, Egli S. 2001. Ectomycorrhizas and molecular phylogeny of the hypogeous russuloid fungus Arcangeliella borziana. Mycol Res 105:1231-1238.
38. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818.
39. Rokas A, Williams BL, King N, Carroll SB. 2003. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425:798-804.
40. Schaefer Z. 1970. Beitrag zum Studium der Milchlinge. Sektion Dapetes. Schweiz Z Pilzk 48:105-143.
41. Schmitt JA. 1974. Chemotaxonomische, morphologische und pflanzensoziologische Studien an Mitteleuropäischen Lactarius-Arten der Sektion Dapetes Fr. (Blutreizker). Z Pilzk 39:219-244.
42. Shen Q, Geiser DM, Royse DJ. 2002. Molecular phylogenetic analysis of Grifola frondosa (maitake) reveals a species partition separating eastern North American and Asian isolates. Mycologia 94:472-482.
43. Sterner O, Anke H. 1995. Toxic terpenoids from higher fungi. Czech Mycol 48:39-52.
44. Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4. Sunderland, Massachusetts: Sinauer Associates.
45. Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526.
46. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acid Res 25:4876-4882.
47. Verbeken A. 2001. Worldwide systematics of Lactarius: a state of the art. Micol Veg Med 16:71-88.
48. _, Horak E. 2000. Lactarius (Basidiomycota) in Papua New Guinea 2. Species in Tropical-montane Rainforests. Austral Syst Bot 13:649-707.
49. White TJ, Bruns T, Lee SS, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. New York: Academic Press. p 315-322.
50. Wu Q-X, Mueller GM. 1997. Biogeographic relationships between the macrofungi of temperate eastern Asia and eastern North America. Can J Bot 75:2108-2116.