An AbrB-like protein regulates the expression of the bidirectional hydrogenase in Synechocystis sp. strain PCC 6803

Journal of Bacteriology

Volumn 190, Issue 3, 2008, Pages 1011-1019

  Oliveira, Paulo ^a   Lindblad, Peter ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ABRB LIKE PROTEIN; BACTERIAL PROTEIN; DNA BINDING PROTEIN; GENOMIC DNA; HYDROGEN; NICKEL IRON HYDROGENASE; PLASMID DNA; RNA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR LEXA; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BINDING AFFINITY; CYANOBACTERIUM; DNA BINDING; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; HOX GENE; MOLECULAR CLONING; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROMOTER REGION; SYNECHOCYSTIS;

BACTERIAL PROTEINS; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; HYDROGENASE; PROMOTER REGIONS (GENETICS); SYNECHOCYSTIS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

BACILLUS SUBTILIS; SYNECHOCYSTIS SP.;

EID: 38649135394     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01605-07     Document Type: Article

References (48)

1. Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Antal, T. K., P. Oliveira, and P. Lindblad. 2006. The bidirectional hydrogenase in the cyanobacterium Synechocystis sp. strain PCC 6803. Int. J. Hydrogen Energy 31:1439-1444.
3. Axelsson, R., and P. Lindblad. 2002. Transcriptional regulation of Nostoc hydrogenases: effects of oxygen, hydrogen, and nickel. Appl. Environ. Microbiol. 68:444-447.
4. Axelsson, R., F. Oxelfelt, and P. Lindblad. 1999. Transcriptional regulation of Nostoc uptake hydrogenase. FEMS Microbiol. Lett. 170:77-81.
5. Barne, K. A., J. A. Bown, S. J. W. Busby, and S. D. Minchin. 1997. Region 2.5 of the Escherichia coli RNA polymerase sigma70 subunit is responsible for the recognition of the 'extended-10' motif at promoters. EMBO J. 16:4034-4040.
6. Bobay, B. G., L. Benson, S. Naylor, B. Feeney, A. C. Clark, M. B. Goshe, M. A. Strauch, R. Thompson, and J. Cavanagh. 2004. Evaluation of the DNA binding tendencies of the transition state regulator AbrB. Biochemistry 43:16106-16118.
7. Bobay, B. G., G. A. Mueller, R. J. Thompson, A. G. Murzin, R. A. Venters, M. A. Strauch, and J. Cavanagh. 2006. NMR structure of AbhN and comparison with AbrBN: first insights into the DNA binding promiscuity and specificity of AbrB-like transition state regulator proteins. J. Biol. Chem. 281:21399-21409.
8. Bogorad, L. 1975. Phycobiliproteins and complementary chromatic adaptation. Annu. Rev. Plant Physiol. 26:369-401.
9. Colyer, C. L., C. S. Kinkade, P. J. Viskari, and J. P. Landers. 2005. Analysis of cyanobacterial pigments and proteins by electrophoretic and chromatographic methods. Anal. Bioanal. Chem. 382:559-569.
10. deHaseth, P. L., M. L. Zupancic, and M. T. Record, Jr. 1998. RNA polymerase-promoter interactions: the comings and goings of RNA polymerase. J. Bacteriol. 180:3019-3025.
11. Domain, F., L. Houot, F. Chauvat, and C. Cassier-Chauvat. 2004. Function and regulation of the cyanobacterial genes lexA, recA and ruvB: LexA is critical to the survival of cells facing inorganic carbon starvation. Mol. Microbiol. 53:65-80.
12. Dyczmons, N. G. 2006. Expression and regulation of membrane proteins: special focus on cytochrome bd-oxidase from Synechocystis sp. PCC 6803. Ph.D. thesis. Ruhr-Universität Bochum, Bochum, Germany.
13. Elhai, J., and C. P. Wolk. 1988. Conjugal transfer of DNA to cyanobacteria, p. 747-754. In L. Packer and A. N. Glazer (ed.), Methods in enzymology, vol. 167. Academic Press, Inc., San Diego, CA.
14. Espinosa, J., K. Forchhammer, S. Burillo, and A. Contreras. 2006. Interaction network in cyanobacterial nitrogen regulation: PipX, a protein that interacts in a 2-oxoglutarate dependent manner with PII and NtcA. Mol. Microbiol. 61:457-469.
15. Ferreira, D., E. Leitão, J. Sjöholm, P. Oliveira, P. Lindblad, P. Moradas-Ferreira, and P. Tamagnini. 2007. Transcription and regulation of the hydrogenase(s) accessory genes, hypFCDEAB, in the cyanobacterium Lyngbya majuscula CCAP 1446/4. Arch. Microbiol. 188:609-617.
16. Gan, C. S., K. F. Reardon, and P. C. Wright. 2005. Comparison of protein and peptide prefractionation methods for the shotgun proteomic analysis of Synechocystis sp. PCC 6803. Proteomics 5:2468-2478.
17. Gutekunst, K., S. Phunpruch, C. Schwarz, S. Schuchardt, R. Schulz-Friedrich, and J. Appel. 2005. LexA regulates the bidirectional hydrogenase in the cyanobacterium Synechocystis sp. PCC 6803 as a transcription activator. Mol. Microbiol. 58:810-823.
18. Hörnemann, A. 2001. Heterologe Überexpression in cyanobakterien. M.S. thesis. Ruhr-Universität Bochum, Bochum, Germany.
19. Ishii, A., and Y. Hihara. 2006. Characterization of putative transcriptional regulators having an AbrB-type DNA binding domain in Synechocystis sp. PCC 6803. Plant Cell Physiol. 47:S87.
20. Kaneko, T., S. Sato, H. Kotani, A. Tanaka, E. Asamizu, Y. Nakamura, N. Miyajima, M. Hirosawa, M. Sugiura, S. Sasamoto, T. Kimura, T. Hosouchi, A. Matsuno, A. Muraki, N. Nakazaki, K. Naruo, S. Okumura, S. Shimpo, C. Takeuchi, T. Wada, A. Watanabe, M. Yamada, M. Yasuda, and S. Tabata. 1996. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions (supplement). DNA Res. 3:185-209.
21. Kufryk, G. I., M. Sachet, G. Schmetterer, and W. F. J. Vermaas. 2002. Transformation of the cyanobacterium Synechocystis sp. PCC 6803 as a tool for genetic mapping: optimization of efficiency. FEMS Microbiol. Lett. 206:215-219.
22. Labarre, J., F. Chauvat, and P. Thuriaux. 1989. Insertional mutagenesis by random cloning of antibiotic resistance genes into the genome of the cyanobacterium Synechocystis strain PCC 6803. J. Bacteriol. 171:3449-3457.
23. Leitão, E., F. Oxelfelt, P. Oliveira, P. Moradas-Ferreira, and P. Tamagnini. 2005. Analysis of the hupSL operon of the nonheterocystous cyanobacterium Lyngbya majuscula CCAP 1446/4: regulation of transcription and expression under a light-dark regimen. Appl. Environ. Microbiol. 71:4567-4576.
24. Lindberg, P. 2003. Cyanobacterial hydrogen metabolism - uptake hydrogenase and hydrogen production by nitrogenase in filamentous cyanobacteria. Ph.D. thesis. Uppsala University, Uppsala, Sweden.
25. Malakhov, M. P., O. A. Malakhova, and N. Murata. 1999. Balanced regulation of expression of the gene for cytochrome cM and that of genes for plastocyanin and cytochrome c6 in Synechocystis. FEBS Lett. 444:281-284.
26. Montesinos, M. L., A. M. Muro-Pastor, A. Herrero, and E. Flores. 1998. Ammonium/methylammonium permeases of a cyanobacterium: identification and analysis of three nitrogen-regulated amt genes in Synechocystis sp. PCC 6803. J. Biol. Chem. 273:31463-31470.
27. Oliveira, P., E. Leitão, P. Tamagnini, P. Moradas-Ferreira, and F. Oxelfelt. 2004. Characterization and transcriptional analysis of hupSLW in Gloeothece sp. ATCC 27152: an uptake hydrogenase from a unicellular cyanobacterium. Microbiology 150:3647-3655.
28. Oliveira, P., and P. Lindblad. 2005. LexA, a transcription regulator binding in the promoter region of the bidirectional hydrogenase in the cyanobacterium Synechocystis sp. PCC 6803. FEMS Microbiol. Lett. 251:59-66.
29. Oliver, R. L., and G. G. Ganf. 2000. Freshwater blooms, p. 149-194. In B. A. Whitton and M. Potts (ed.), The ecology of cyanobacteria. Kluwer Academic Publishers, Dordrecht, The Netherlands.
30. Patterson-Fortin, L. M., K. R. Colvin, and G. W. Owttrim. 2006. A LexA-related protein regulates redox-sensitive expression of the cyanobacterial RNA helicase, crhR. Nucleic Acids Res. 34:3446-3454.
31. Sazuka, T., M. Yamaguchi, and O. Ohara. 1999. Cyano2Dbase updated: linkage of 234 protein spots to corresponding genes through N-terminal microsequencing. Electrophoresis 20:2160-2171.
32. 2 production - a comparative analysis. Planta 218:350-359.
33. Sjöholm, J., P. Oliveira, and P. Lindblad. 2007. Transcription and regulation of the bidirectional hydrogenase in the cyanobacterium Nostoc sp. strain PCC 7120. Appl. Environ. Microbiol. 73:5435-5446.
34. Srivastava, R., T. Pisareva, and B. Norling. 2005. Proteomic studies of the thylakoid membrane of Synechocystis sp. PCC 6803. Proteomics 5:4905-4916.
35. Stanier, R. Y., R. Kunisawa, M. Mandel, and G. Cohen-Bazire. 1971. Purification and properties of unicellular blue-green algae (order Chroococcales). Microbiol. Mol. Biol. Rev. 35:171-205.
36. Suzuki, I., Y. Kanesaki, H. Hayashi, J. J. Hall, W. J. Simon, A. R. Slabas, and N. Murata. 2005. The histidine kinase Hik34 is involved in thermotolerance by regulating the expression of heat shock genes in Synechocystis. Plant Physiol. 138:1409-1421.
37. Tamagnini, P., R. Axelsson, P. Lindberg, F. Oxelfelt, R. Wünschiers, and P. Lindblad. 2002. Hydrogenases and hydrogen metabolism of cyanobacteria. Microbiol. Mol. Biol. Rev. 66:1-20.
38. Tamagnini, P., E. Leitão, P. Oliveira, D. Ferreira, F. Pinto, D. J. Harris, T. Heidorn, and P. Lindblad. 2007. Cyanobacterial hydrogenases: diversity, regulation and applications. FEMS Microbiol. Rev. 31:692-720.
39. Tamagnini, P., O. Troshina, F. Oxelfelt, R. Salema, and P. Lindblad. 1997. Hydrogenases in Nostoc sp. strain PCC 73102, a strain lacking a bidirectional enzyme. Appl. Environ. Microbiol. 63:1801-1807.
40. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
41. 2-fixing heterocysts of Anabaena sp. strain PCC 7120.1. Bacteriol. 186:7337-7343.
42. Vaughn, J. L., V. Feher, S. Naylor, M. A. Strauch, and J. Cavanagh. 2000. Novel DNA binding domain and genetic regulation model of Bacillus subtilis transition state regulator AbrB. Nat. Struct. Mol. Biol. 7:1139-1146.
43. Vioque, A. 1992. Analysis of the gene encoding the RNA subunit of ribonuclease P from cyanobacteria. Nucleic Acids Res. 20:6331-6337.
44. Viskari, P. J., C. S. Kinkade, and C. L. Colyer. 2001. Determination of phycobiliproteins by capillary electrophoresis with laser-induced fluorescence detection. Electrophoresis 22:2327-2335.
45. Wang, Y., J. Sun, and P. R. Chitnis. 2000. Proteomic study of the peripheral proteins from thylakoid membranes of the cyanobacterium Synechocystis sp. PCC 6803. Electrophoresis 21:1746-1754.
46. Williams, R. C., J. C. Gingrich, and A. N. Glazer. 1980. Cyanobacterial phycobilisomes. Particles from Synechocystis 6701 and two pigment mutants. J. Cell Biol. 85:558-566.
47. Wilm, M., A. Shevchenko, T. Houthaeve, S. Breit, L. Schweigerer, T. Fotsis, and M. Mann. 1996. Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry. Nature 379:466-469.
48. Xu, K., and M. A. Strauch. 2001. DNA-binding activity of amino-terminal domains of the Bacillus subtilis AbrB Protein. J. Bacteriol. 183:4094-4098.