-
1
-
-
38649131573
-
-
Amir-Kroll, H., A. Sadot, I. Cohen and D. Harel, GemCell: A Generic Platform for Modeling Multi-Cellular Biological Systems, T. Comp. Sys. Biology to appear (2007)
-
-
-
-
3
-
-
38349003563
-
Abstract Machines of Systems Biology
-
Cardelli L. Abstract Machines of Systems Biology. T. Comp. Sys. Biology 3 (2005) 145-168
-
(2005)
T. Comp. Sys. Biology
, vol.3
, pp. 145-168
-
-
Cardelli, L.1
-
4
-
-
34047105227
-
Explaining a Complex Living System: Dynamics, Multi-scaling and Emergence
-
Cohen I.R., and Harel D. Explaining a Complex Living System: Dynamics, Multi-scaling and Emergence. J. R. Soc. Interface 4 (2007) 175-182
-
(2007)
J. R. Soc. Interface
, vol.4
, pp. 175-182
-
-
Cohen, I.R.1
Harel, D.2
-
5
-
-
38649130307
-
-
Damm, W. and D. Harel, LSC's: Breathing Life into Message Sequence Charts, in: P. Ciancarini, A. Fantechi and R. Gorrieri, editors, Proc. 3rd IFIP Int. Conf. on Formal Methods for Open Object-Based Distributed Systems (FMOODS'99) (1999)
-
-
-
-
6
-
-
0242574975
-
Towards Rigorous Comprehension of Biological Complexity: Modeling, Execution and Visualization of Thymic T Cell Maturation
-
Efroni S., Harel D., and Cohen I.R. Towards Rigorous Comprehension of Biological Complexity: Modeling, Execution and Visualization of Thymic T Cell Maturation. Genome Research 13 (2003) 2485-2497
-
(2003)
Genome Research
, vol.13
, pp. 2485-2497
-
-
Efroni, S.1
Harel, D.2
Cohen, I.R.3
-
7
-
-
17844384842
-
Reactive Animation: Realistic Modeling of Complex Dynamic Systems
-
Efroni S., Harel D., and Cohen I.R. Reactive Animation: Realistic Modeling of Complex Dynamic Systems. IEEE Computer 38 (2005) 38-47
-
(2005)
IEEE Computer
, vol.38
, pp. 38-47
-
-
Efroni, S.1
Harel, D.2
Cohen, I.R.3
-
8
-
-
33846542982
-
Emergent Dynamics of Thymocyte Development and Lineage Determination
-
Efroni S., Harel D., and Cohen I.R. Emergent Dynamics of Thymocyte Development and Lineage Determination. PLoS Comput. Biol. 3 (2007) 127-136
-
(2007)
PLoS Comput. Biol.
, vol.3
, pp. 127-136
-
-
Efroni, S.1
Harel, D.2
Cohen, I.R.3
-
9
-
-
3042678959
-
Computational Challenges of Systems Biology
-
Finkelstein A., Hetherington J., Li L., Margoninski O., Saffrey P., Seymour R., and Warner A. Computational Challenges of Systems Biology. IEEE Computer 37 (2004) 26-33
-
(2004)
IEEE Computer
, vol.37
, pp. 26-33
-
-
Finkelstein, A.1
Hetherington, J.2
Li, L.3
Margoninski, O.4
Saffrey, P.5
Seymour, R.6
Warner, A.7
-
10
-
-
34249683449
-
-
Fisher, J. and T.A. Henzinger, Executable Biology, in: WSC '06: Proc. of the 38th conference on Winter simulation (2006), pp. 1675-1682
-
-
-
-
11
-
-
14344265954
-
Symbolic Reachable Set Computation of Piecewise Affine Hybrid Automata and its Application to Biological Modelling: Delta-Notch Protein Signalling
-
Ghosh R., and Tomlin C. Symbolic Reachable Set Computation of Piecewise Affine Hybrid Automata and its Application to Biological Modelling: Delta-Notch Protein Signalling. Syst. Biol. (Stevenage) 1 (2004) 170-183
-
(2004)
Syst. Biol. (Stevenage)
, vol.1
, pp. 170-183
-
-
Ghosh, R.1
Tomlin, C.2
-
12
-
-
0023365727
-
Statecharts: A Visual Formalism for Complex Systems
-
Harel D. Statecharts: A Visual Formalism for Complex Systems. Sci. Comput. Programming 8 (1987) 231-274
-
(1987)
Sci. Comput. Programming
, vol.8
, pp. 231-274
-
-
Harel, D.1
-
13
-
-
17844370725
-
A Grand Challenge for Computing: Full Reactive Modeling of a Multi-Cellular Animal
-
Harel D. A Grand Challenge for Computing: Full Reactive Modeling of a Multi-Cellular Animal. Bulletin of the EATCS 81 (2003) 226-235
-
(2003)
Bulletin of the EATCS
, vol.81
, pp. 226-235
-
-
Harel, D.1
-
14
-
-
0000835369
-
On the Development of Reactive Systems
-
Logics and Models of Concurrent Systems. Apt K.R. (Ed) New York
-
Harel D., and Pnueli A. On the Development of Reactive Systems. In: Apt K.R. (Ed). Logics and Models of Concurrent Systems. NATO ASI Series F-13 (1985) 477-498 New York
-
(1985)
NATO ASI Series
, vol.F-13
, pp. 477-498
-
-
Harel, D.1
Pnueli, A.2
-
15
-
-
0142152377
-
Reactive Animation
-
Proc. 1st Int. Symposium on Formal Methods for Components and Objects. (FMCO 2002)
-
Harel D., Efroni S., and Cohen I.R. Reactive Animation. Proc. 1st Int. Symposium on Formal Methods for Components and Objects. (FMCO 2002). Lecture Notes in Computer Science 2852 (2003) 136-153
-
(2003)
Lecture Notes in Computer Science
, vol.2852
, pp. 136-153
-
-
Harel, D.1
Efroni, S.2
Cohen, I.R.3
-
16
-
-
0031187475
-
Executable Object Modeling with Statecharts
-
also in
-
Harel D., and Gery E. Executable Object Modeling with Statecharts. IEEE Computer (1997) 31-42 also in
-
(1997)
IEEE Computer
, pp. 31-42
-
-
Harel, D.1
Gery, E.2
-
17
-
-
0029522053
-
Executable Object Modeling with Statecharts
-
Berlin, IEEE Press
-
Harel D., and Gery E. Executable Object Modeling with Statecharts. Proc. 18th Int. Conf. Soft. Eng. Berlin (March, 1996), IEEE Press 246-257
-
(1996)
Proc. 18th Int. Conf. Soft. Eng.
, pp. 246-257
-
-
Harel, D.1
Gery, E.2
-
19
-
-
38649086192
-
-
Harel, D. and Y. Setty, Generic and Multi-Party Reactive Animation, submitted
-
-
-
-
20
-
-
33845224003
-
Probabilistic Model Checking of Complex Biological Pathways
-
Proc. Computational Methods in Systems Biology. Priami C. (Ed). (CMSB'06)
-
Heath J., Kwiatkowska M., Norman G., Parker D., and Tymchyshyn O. Probabilistic Model Checking of Complex Biological Pathways. In: Priami C. (Ed). Proc. Computational Methods in Systems Biology. (CMSB'06). Lecture Notes in Bioinformatics 4210 (2006) 32-47
-
(2006)
Lecture Notes in Bioinformatics
, vol.4210
, pp. 32-47
-
-
Heath, J.1
Kwiatkowska, M.2
Norman, G.3
Parker, D.4
Tymchyshyn, O.5
-
21
-
-
0348047628
-
Gene Regulatory Factors in Pancreatic Development
-
Jensen J. Gene Regulatory Factors in Pancreatic Development. Dev. Dyn. 229 (2004) 176-200
-
(2004)
Dev. Dyn.
, vol.229
, pp. 176-200
-
-
Jensen, J.1
-
22
-
-
84883592668
-
-
Kam, N., D. Harel, H. Kugler, R. Marelly, A. Pnueli, E. Hubbard and M. Stern, Formal Modeling of C. elegans Development: A Scenario-Based Approach, in: C. Priami, editor, Proc. Int. Workshop on Computational Methods in Systems Biology (CMSB 2003) (2003), pp. 4-20
-
-
-
-
23
-
-
0036777339
-
Signaling and transcriptional control of pancreatic organogenesis
-
Kim S.K., and MacDonald R.J. Signaling and transcriptional control of pancreatic organogenesis. Curr. Opin. Genet. Dev. 12 (2002) 540-547
-
(2002)
Curr. Opin. Genet. Dev.
, vol.12
, pp. 540-547
-
-
Kim, S.K.1
MacDonald, R.J.2
-
24
-
-
21044433733
-
The heart is already working
-
Noble D. The heart is already working. Biochem. Soc. Trans. 33 (2005) 539-542
-
(2005)
Biochem. Soc. Trans.
, vol.33
, pp. 539-542
-
-
Noble, D.1
-
25
-
-
0142149043
-
Critical Role for CXCR4 Signaling in Progenitor Localization and T Cell Differentiation in the Postnatal Thymus
-
Plotkin J., Prockop S., Lepique A., and Petrie H. Critical Role for CXCR4 Signaling in Progenitor Localization and T Cell Differentiation in the Postnatal Thymus. J. Immunol. 171 (2003) 4521-4527
-
(2003)
J. Immunol.
, vol.171
, pp. 4521-4527
-
-
Plotkin, J.1
Prockop, S.2
Lepique, A.3
Petrie, H.4
-
27
-
-
0037179670
-
Cellular abstractions: Cells as computation
-
Regev A., and Shapiro E. Cellular abstractions: Cells as computation. Nature 419 (2002) 343
-
(2002)
Nature
, vol.419
, pp. 343
-
-
Regev, A.1
Shapiro, E.2
-
28
-
-
0035235039
-
-
Regev, A., W. Silverman and E. Shapiro, Representation and simulation of biochemical processes using the pi-calculus process algebra, in: Pacific Symposium on Biocomputing, 2001, pp. 459-470
-
-
-
-
29
-
-
38649087764
-
-
Roux-Rouquié, M. and D.S. da Rosa, Ten Top Reasons for Systems Biology to Get into Model-Driven Engineering, in: GaMMa '06: Proc. of the 2006 international workshop on Global integrated model management (2006), pp. 55-58
-
-
-
-
30
-
-
38649095737
-
-
Sadot, A., J. Fisher, D. Barak, Y. Admanit, M.J. Stern, E.J.A. Hubbard and D. Harel, Towards Verified Biological Models, IEEE/ACM Trans. Comput. Biology and Bioinformatics to appear (2007)
-
-
-
-
31
-
-
38649091489
-
-
Setty, Y., I.R. Cohen, Y. Dor and D. Harel, Four-Dimensional Realistic Modeling of Pancreatic Organogenesis, submitted
-
-
-
-
32
-
-
38649089565
-
-
Swerdlin, N., I. Cohen and D. Harel, The Lymph Node B Cell Immune Response: Dynamic Analysis in-silico, submitted
-
-
-
-
33
-
-
33947142443
-
-
Taubner, C. and T. Merker, Discrete Modelling of the Ethylene-Pathway, in: ICDEW '05: Proceedings of the 21st International Conference on Data Engineering Workshops (2005), p. 1152
-
-
-
-
36
-
-
0025069090
-
The Chemical Basis of Morphogenesis. 1953
-
discussion 119-152
-
Turing A.M. The Chemical Basis of Morphogenesis. 1953. Bull. Math. Biol. 52 (1990) 153-197 discussion 119-152
-
(1990)
Bull. Math. Biol.
, vol.52
, pp. 153-197
-
-
Turing, A.M.1
-
37
-
-
4544262945
-
-
Webb, K. and T. White, Cell Modeling using Agent-based Formalisms, in: AAMAS '04: Proc. of the Third International Joint Conference on Autonomous Agents and Multiagent Systems (2004), pp. 1190-1196
-
-
-
-
38
-
-
2442600380
-
-
Webb, K. and T. White, Combining Analysis and Synthesis in a Model of a Biological Cell, in: SAC '04: Proc. of the 2004 ACM symposium on Applied computing (2004), pp. 185-190
-
-
-
-
39
-
-
33645004416
-
Cell Modeling with Reusable Agent-based Formalisms
-
Webb K., and White T. Cell Modeling with Reusable Agent-based Formalisms. Applied Intelligence 24 (2006) 169-181
-
(2006)
Applied Intelligence
, vol.24
, pp. 169-181
-
-
Webb, K.1
White, T.2
|