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Volumn 77, Issue 1, 2008, Pages

Thermal denaturation of fluctuating finite DNA chains: The role of bending rigidity in bubble nucleation

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONS; MATHEMATICAL MODELS; NUCLEATION; ONE DIMENSIONAL; STATISTICAL METHODS; TRANSFER MATRIX METHOD;

EID: 38649118824     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.77.011913     Document Type: Article
Times cited : (39)

References (57)
  • 4
    • 0041990305 scopus 로고
    • ADCPAA 0065-2385 10.1002/9780470143728.ch2
    • R. M. Wartell and E. W. Montroll, Adv. Chem. Phys. ADCPAA 0065-2385 10.1002/9780470143728.ch2 22, 129 (1972).
    • (1972) Adv. Chem. Phys. , vol.22 , pp. 129
    • Wartell, R.M.1    Montroll, E.W.2
  • 5
    • 85030082000 scopus 로고
    • ADVBAT 0065-227X 10.1016/0065-227X(83)90009-6
    • O. Gotoh, Adv. Biophys. ADVBAT 0065-227X 10.1016/0065-227X(83)90009-6 16, 1 (1983).
    • (1983) Adv. Biophys. , vol.16 , pp. 1
    • Gotoh, O.1
  • 7
    • 5744255023 scopus 로고    scopus 로고
    • EULEEJ 0295-5075 10.1209/epl/i2004-10167-8
    • G. Kalosakas, Europhys. Lett. EULEEJ 0295-5075 10.1209/epl/i2004-10167-8 68, 127 (2004).
    • (2004) Europhys. Lett. , vol.68 , pp. 127
    • Kalosakas, G.1
  • 10
    • 0023474369 scopus 로고
    • BIPMAA 0006-3525 10.1002/bip.360261204
    • R. D. Blake and S. G. Delcourt, Biopolymers BIPMAA 0006-3525 10.1002/bip.360261204 26, 2009 (1987).
    • (1987) Biopolymers , vol.26 , pp. 2009
    • Blake, R.D.1    Delcourt, S.G.2
  • 12
    • 0029965473 scopus 로고    scopus 로고
    • JMOBAK 0022-2836 10.1006/jmbi.1996.0035
    • C. J. Benham, J. Mol. Biol. JMOBAK 0022-2836 10.1006/jmbi.1996.0035 255, 425 (1996);
    • (1996) J. Mol. Biol. , vol.255 , pp. 425
    • Benham, C.J.1
  • 13
    • 0001215523 scopus 로고    scopus 로고
    • PLEEE8 1063-651X 10.1103/PhysRevE.59.3408
    • R. M. Fye and C. J. Benham, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.59.3408 59, 3408 (1999).
    • (1999) Phys. Rev. e , vol.59 , pp. 3408
    • Fye, R.M.1    Benham, C.J.2
  • 14
    • 0002459355 scopus 로고
    • PRPLCM 0370-1573 10.1016/0370-1573(85)90060-2
    • R. M. Wartell and A. S. Benight, Phys. Rep. PRPLCM 0370-1573 10.1016/0370-1573(85)90060-2 126, 67 (1985).
    • (1985) Phys. Rep. , vol.126 , pp. 67
    • Wartell, R.M.1    Benight, A.S.2
  • 16
    • 0000668407 scopus 로고
    • JCPSA6 0021-9606 10.1063/1.1730390
    • B. H. Zimm and J. K. Bragg, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1730390 31, 526 (1959);
    • (1959) J. Chem. Phys. , vol.31 , pp. 526
    • Zimm, B.H.1    Bragg, J.K.2
  • 17
    • 0000754002 scopus 로고
    • JCPSA6 0021-9606 10.1063/1.1731411
    • B. H. Zimm, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1731411 33, 1349 (1960).
    • (1960) J. Chem. Phys. , vol.33 , pp. 1349
    • Zimm, B.H.1
  • 18
    • 0032998464 scopus 로고    scopus 로고
    • BOINFP 1367-4803 10.1093/bioinformatics/15.5.370
    • R. D. Blake, Bioinformatics BOINFP 1367-4803 10.1093/bioinformatics/15.5. 370 15, 370 (1999).
    • (1999) Bioinformatics , vol.15 , pp. 370
    • Blake, R.D.1
  • 19
    • 0032527828 scopus 로고    scopus 로고
    • NARHAD 0305-1048 10.1093/nar/26.14.3323
    • R. D. Blake and S. G. Delcourt, Nucleic Acids Res. NARHAD 0305-1048 10.1093/nar/26.14.3323 26, 3323 (1998).
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3323
    • Blake, R.D.1    Delcourt, S.G.2
  • 20
    • 0034351060 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.85.4988
    • Y. Kafri, D. Mukamel and L. Peliti, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.85.4988 85, 4988 (2000).
    • (2000) Phys. Rev. Lett. , vol.85 , pp. 4988
    • Kafri, Y.1    Mukamel, D.2    Peliti, L.3
  • 21
    • 19044363437 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.88.198101
    • E. Carlon, E. Orlandini, and A. L. Stella, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.88.198101 88, 198101 (2002).
    • (2002) Phys. Rev. Lett. , vol.88 , pp. 198101
    • Carlon, E.1    Orlandini, E.2    Stella, A.L.3
  • 22
    • 4243187319 scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.62.2755
    • M. Peyrard and A. R. Bishop, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.62.2755 62, 2755 (1989).
    • (1989) Phys. Rev. Lett. , vol.62 , pp. 2755
    • Peyrard, M.1    Bishop, A.R.2
  • 23
    • 12144279970 scopus 로고
    • PLEEE8 1063-651X 10.1103/PhysRevE.47.684
    • T. Dauxois, M. Peyrard, and A. R. Bishop, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.47.684 47, 684 (1993).
    • (1993) Phys. Rev. e , vol.47 , pp. 684
    • Dauxois, T.1    Peyrard, M.2    Bishop, A.R.3
  • 24
    • 6144223864 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.79.2375
    • D. Cule and T. Hwa, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.79.2375 79, 2375 (1997).
    • (1997) Phys. Rev. Lett. , vol.79 , pp. 2375
    • Cule, D.1    Hwa, T.2
  • 25
    • 1642365792 scopus 로고    scopus 로고
    • NONLE5 0951-7715 10.1088/0951-7715/17/2/R01
    • M. Peyrard, Nonlinearity NONLE5 0951-7715 10.1088/0951-7715/17/2/R01 17, R1 (2004).
    • (2004) Nonlinearity , vol.17 , pp. 1
    • Peyrard, M.1
  • 27
    • 33749048992 scopus 로고    scopus 로고
    • JCPSA6 0021-9606 10.1063/1.2192774
    • J.-H. Jeon, W. Sung, and F. H. Ree, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2192774 124, 164905 (2006).
    • (2006) J. Chem. Phys. , vol.124 , pp. 164905
    • Jeon, J.-H.1    Sung, W.2    Ree, F.H.3
  • 28
    • 0029941154 scopus 로고    scopus 로고
    • JMOBAK 0022-2836 10.1006/jmbi.1996.0330
    • T. E. Cheatham and P. A. Kollman, J. Mol. Biol. JMOBAK 0022-2836 10.1006/jmbi.1996.0330 259, 434 (1996).
    • (1996) J. Mol. Biol. , vol.259 , pp. 434
    • Cheatham, T.E.1    Kollman, P.A.2
  • 29
    • 0035385019 scopus 로고    scopus 로고
    • EULEEJ 0295-5075 10.1209/epl/i2001-00391-2
    • T. Garel, C. Monthus, and H. Orland, Europhys. Lett. EULEEJ 0295-5075 10.1209/epl/i2001-00391-2 55, 132 (2001).
    • (2001) Europhys. Lett. , vol.55 , pp. 132
    • Garel, T.1    Monthus, C.2    Orland, H.3
  • 30
    • 34548244050 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.99.088103
    • J. Palmeri, M. Manghi, and N. Destainville, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.99.088103 99, 088103 (2007).
    • (2007) Phys. Rev. Lett. , vol.99 , pp. 088103
    • Palmeri, J.1    Manghi, M.2    Destainville, N.3
  • 31
    • 19544379865 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.93.108108
    • J. Yan and J. F. Marko, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.93.108108 93, 108108 (2004).
    • (2004) Phys. Rev. Lett. , vol.93 , pp. 108108
    • Yan, J.1    Marko, J.F.2
  • 33
    • 0037779297 scopus 로고    scopus 로고
    • C. Storm and P. C. Nelson, EULEEJ 0295-5075 10.1209/epl/i2003-00336-3
    • C. Storm, and, P. C. Nelson, Europhys. Lett. EULEEJ 0295-5075 10.1209/epl/i2003-00336-3 62, 760 (2003).
    • (2003) Europhys. Lett. , vol.62 , pp. 760
  • 34
    • 84928635066 scopus 로고
    • AJPIAS 0002-9505 10.1119/1.1970340
    • M. E. Fisher, Am. J. Phys. AJPIAS 0002-9505 10.1119/1.1970340 32, 343 (1964).
    • (1964) Am. J. Phys. , vol.32 , pp. 343
    • Fisher, M.E.1
  • 35
    • 33645062580 scopus 로고
    • PHRVAO 0031-899X 10.1103/PhysRev.155.478
    • G. S. Joyce, Phys. Rev. PHRVAO 0031-899X 10.1103/PhysRev.155.478 155, 478 (1967).
    • (1967) Phys. Rev. , vol.155 , pp. 478
    • Joyce, G.S.1
  • 36
    • 0000349669 scopus 로고    scopus 로고
    • PRPLCM 0370-1573 10.1016/S0370-1573(98)00022-2
    • M. Grifoni and P. Hänggi, Phys. Rep. PRPLCM 0370-1573 10.1016/S0370-1573(98)00022-2 304, 229 (1998).
    • (1998) Phys. Rep. , vol.304 , pp. 229
    • Grifoni, M.1    Hänggi, P.2
  • 41
    • 33847035251 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.98.070601
    • H. C. Fogedby and R. Metzler, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.98.070601 98, 070601 (2007).
    • (2007) Phys. Rev. Lett. , vol.98 , pp. 070601
    • Fogedby, H.C.1    Metzler, R.2
  • 42
    • 2542485691 scopus 로고    scopus 로고
    • PLEEE8 1063-651X 10.1103/PhysRevE.68.061911
    • R. Blossey and E. Carlon, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.68.061911 68, 061911 (2003).
    • (2003) Phys. Rev. e , vol.68 , pp. 061911
    • Blossey, R.1    Carlon, E.2
  • 43
  • 45
    • 10844229039 scopus 로고    scopus 로고
    • BIPMAA 0006-3525 10.1002/bip.20140
    • T. Garel and H. Orland, Biopolymers BIPMAA 0006-3525 10.1002/bip.20140 75, 453 (2004).
    • (2004) Biopolymers , vol.75 , pp. 453
    • Garel, T.1    Orland, H.2
  • 47
    • 0026495432 scopus 로고
    • SCIEAS 0036-8075 10.1126/science.1439819
    • S. B. Smith, L. Finzi, and C. Bustamante, Science SCIEAS 0036-8075 10.1126/science.1439819 258, 1122 (1992).
    • (1992) Science , vol.258 , pp. 1122
    • Smith, S.B.1    Finzi, L.2    Bustamante, C.3
  • 48
    • 33750007449 scopus 로고    scopus 로고
    • NARHAD 0305-1048
    • N. Pouget, Nucleic Acids Res. NARHAD 0305-1048 34, 4313 (2006).
    • (2006) Nucleic Acids Res. , vol.34 , pp. 4313
    • Pouget, N.1
  • 49
    • 33845810345 scopus 로고    scopus 로고
    • NNAABX 1748-3387 10.1038/nnano.2006.63
    • P. A. Wiggins, Nat. Nanotechnol. NNAABX 1748-3387 10.1038/nnano.2006.63 1, 137 (2006).
    • (2006) Nat. Nanotechnol. , vol.1 , pp. 137
    • Wiggins, P.A.1
  • 50
    • 0015274187 scopus 로고
    • BIPMAA 0006-3525 10.1002/bip.1972.360110502
    • G. S. Manning, Biopolymers BIPMAA 0006-3525 10.1002/bip.1972.360110502 11, 937 (1972).
    • (1972) Biopolymers , vol.11 , pp. 937
    • Manning, G.S.1
  • 53
    • 33846451427 scopus 로고    scopus 로고
    • PRLTAO 0031-9007 10.1103/PhysRevLett.98.038103
    • A. Bar, Y. Kafri, and D. Mukamel, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.98.038103 98, 038103 (2007).
    • (2007) Phys. Rev. Lett. , vol.98 , pp. 038103
    • Bar, A.1    Kafri, Y.2    Mukamel, D.3
  • 54
    • 0028956979 scopus 로고
    • SCIEAS 0036-8075 10.1126/science.7824935
    • L. Finzi and J. Gelles, Science SCIEAS 0036-8075 10.1126/science.7824935 267, 378 (1995).
    • (1995) Science , vol.267 , pp. 378
    • Finzi, L.1    Gelles, J.2
  • 55
    • 0027981314 scopus 로고
    • NARHAD 0305-1048
    • G. Steger, Nucleic Acids Res. NARHAD 0305-1048 22, 2760 (1994).
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2760
    • Steger, G.1


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