Reparametrizing the loop entropy weights: Effect on DNA melting curves

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 68, Issue 6 1, 2003, Pages 619111-619118

  Blossey, Ralf ^a   Carlon, Enrico ^a  

^a CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; DIFFERENTIAL SCANNING CALORIMETRY; DNA SEQUENCES; ELECTROPHORESIS; ENTROPY; MELTING; NUCLEAR MAGNETIC RESONANCE; PROBABILITY; SOLVENTS; THERMAL EFFECTS; ULTRAVIOLET RADIATION;

MELTING CURVES; THERMAL DENATURATION;

DNA;

EID: 2542485691     PISSN: 1063651X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (35)

1. R.M. Wartell and A.S. Benight, Phys. Rep. 121, 67 (1985).
2. V.A. Bloomfield, D.M. Crothers, and I. Tinoco, Nucleic Acids Structures, Properties and Functions (University Science Books, Mill Valley, 2000).
3. E. Lyon, Expert Rev. Mol. Diagn. 1, 92 (2001).
4. E. Yeramian, Gene 255, 139 (2000).
5. E. Yeramian, Gene 255, 151 (2000).
6. J.W. Bizzaro, K.H. Marx, and R.D. Blake, in Materials Science of the Cell, edited by B. Mulder, V. Vogel, and C. Schmidt, MRS Symposia Proceedings No. 489 (Materials Research Society, Pittsburgh, 1998), p. 73.
7. T. Garel and H. Orland, e-print cond-mat/0304080.
8. R.D. Blake et al., Bioinformatics 15, 370 (1999).
9. N. Theodorakopoulos, in Localization and Energy Transfer in Nonlinear Systems, Proceedings of the Third Conference, edited by L. Vázquez, R.S. MacKay, and M.P. Zorzano (World Scientific, Singapore, 2003).
10. B.H. Zimm and J.R. Bragg, J. Chem. Phys. 31, 526 (1959).
11. B.H. Zimm, J. Chem. Phys. 33, 1349 (1960).
12. D. Poland and H.A. Scheraga, J. Chem. Phys. 45, 1456 (1966).
13. R. Owczarzy et al., Biopolymers 44, 217 (1997).
14. D. Poland, Biopolymers 13, 1859 (1974).
15. M.E. Fisher, J. Chem. Phys. 44, 616 (1966).
16. Y. Kafri, D. Mukamel, and L. Peliti, Phys. Rev. Lett. 85, 4988 (2000).
17. E. Carlon, E. Orlandini, and A.L. Stella, Phys. Rev. Lett. 88, 198101 (2002).
18. C. Vanderzande, Lattice Models of Polymers (Cambridge University Press, Cambridge, 1998).
19. R.D. Blake and S.G. Delcourt, Nucleic Acids Res. 26, 3323 (1998).
20. A.L. Oliver, R.M. Wartell, and R.L. Ratliff, Biopolymers 16, 1115 (1977).
21. B.R. Amirikyan, A.V. Vologodskii, and Y.L. Lyubchenko, Nucleic Acids Res. 9, 5469 (1981).
22. R.D. Blake, Biopolymers 26, 1063 (1987).
23. B. Duplantier, Phys. Rev. Lett. 57, 941 (1986).
24. M. Baiesi, E. Carlon, and A.L. Stella, Phys. Rev. E 66, 021804 (2002).
25. M.S. Causo, B. Coluzzi, and P. Grassberger, Phys. Rev. E 62, 3958 (2000).
26. M. Fixman and J.J. Freire, Biopolymers 16, 2693 (1977).
27. See http://www.genome.wisc.edu/sequencing/k12.htm
28. A. Hanke and R. Metzler, Phys. Rev. Lett. 90, 159801 (2003).
29. Y. Kafri, D. Mukamel, and L. Peliti, Phys. Rev. Lett. 90, 159802 (2003).
30. J.F. Marko and E.D. Siggia, Macromolecules 28, 8759 (1995).
31. T. Odijk, J. Polym, Sci. 15, 477 (1977); J. Skolnick and M. Fixman, Macromolecules 10, 944 (1977).
32. T. Odijk, J. Polym, Sci. 15, 477 (1977); J. Skolnick and M. Fixman, Macromolecules 10, 944 (1977).
33. M. Doi and S.F. Edwards, The Theory of Polymer Dynamics (Oxford University Press, New York, 1989).
34. G. Altan-Bonnet, A. Libchaber, and O. Krichevsky, Phys. Rev. Lett. 90, 138101 (2003).
35. G. Zocchi, A. Omerzu, T. Kuriabova, J. Rudnick, and G. Grüner, e-print cond-mat/0304567.