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Volumn 255, Issue 3, 1996, Pages 425-434

Duplex destabilization in superhelical DNA is predicted to occur at specific transcriptional regulatory regions

Author keywords

DNA denaturation; DNA superhelicity; Duplex stability; SOS regulation; Transcriptional regulation

Indexed keywords

DNA; DOUBLE STRANDED DNA; RIBOSOME DNA;

EID: 0029965473     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0035     Document Type: Article
Times cited : (93)

References (23)
  • 1
    • 0015894405 scopus 로고
    • Further analysis of the altered secondary structure of superhelical DNA. Sensitivity to methylmercuric hydroxide, a chemical probe for unpaired bases
    • Beerman, T. A. & Lebowitz, J. (1973). Further analysis of the altered secondary structure of superhelical DNA. Sensitivity to methylmercuric hydroxide, a chemical probe for unpaired bases. J. Mol. Biol. 79, 451-470.
    • (1973) J. Mol. Biol. , vol.79 , pp. 451-470
    • Beerman, T.A.1    Lebowitz, J.2
  • 2
    • 0023650343 scopus 로고
    • The influence of tertiary structural restraints on conformational transitions in superhelical DNA
    • Benham, C. J. (1987). The influence of tertiary structural restraints on conformational transitions in superhelical DNA. Nucl. Acids Res. 15, 9985-9995.
    • (1987) Nucl. Acids Res. , vol.15 , pp. 9985-9995
    • Benham, C.J.1
  • 3
    • 0000015327 scopus 로고
    • Theoretical analysis of heteropolymeric transitions in superhelical DNA molecules of specified sequence
    • Benham, C. J. (1990). Theoretical analysis of heteropolymeric transitions in superhelical DNA molecules of specified sequence. J. Chem. Phys. 92, 6294-6305.
    • (1990) J. Chem. Phys. , vol.92 , pp. 6294-6305
    • Benham, C.J.1
  • 4
    • 0026708149 scopus 로고
    • Energetics of the strand separation transition in superhelical DNA
    • Benham, C. J. (1992). Energetics of the strand separation transition in superhelical DNA. J. Mol. Biol. 225, 835-847.
    • (1992) J. Mol. Biol. , vol.225 , pp. 835-847
    • Benham, C.J.1
  • 5
    • 0027400474 scopus 로고
    • Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci
    • Benham, C. J. (1993). Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci. Proc. Natl Acad. Sci. USA, 90, 2999-3003.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 2999-3003
    • Benham, C.J.1
  • 6
    • 0024296285 scopus 로고
    • Nucleotide sequencing of the ruv region of Escherichia coli reveals a LexA regulated operon encoding two genes
    • Benson, F. E., Illing, G. T., Sharples, G. J. & Lloyd, R. G. (1988). Nucleotide sequencing of the ruv region of Escherichia coli reveals a LexA regulated operon encoding two genes. Nucl. Acids Res. 16, 1541-1549.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 1541-1549
    • Benson, F.E.1    Illing, G.T.2    Sharples, G.J.3    Lloyd, R.G.4
  • 9
    • 0015211548 scopus 로고
    • Partial alteration of secondary structure in native superhelical DNA
    • Dean, W. W. & Lebowitz, J. (1971). Partial alteration of secondary structure in native superhelical DNA. Nature New Biol. 231, 5-8.
    • (1971) Nature New Biol. , vol.231 , pp. 5-8
    • Dean, W.W.1    Lebowitz, J.2
  • 10
    • 0025808064 scopus 로고
    • Stacking energies in DNA
    • Delacourt, S. G. & Blake, R. G. (1991). Stacking energies in DNA. J. Biol. Chem. 266, 15160-15169.
    • (1991) J. Biol. Chem. , vol.266 , pp. 15160-15169
    • Delacourt, S.G.1    Blake, R.G.2
  • 11
    • 0028301199 scopus 로고
    • Complete DNA sequence of yeast chromosome XI
    • Dujon, B., et al. (1994). Complete DNA sequence of yeast chromosome XI. Nature, 369, 371-378.
    • (1994) Nature , vol.369 , pp. 371-378
    • Dujon, B.1
  • 12
    • 0039577881 scopus 로고
    • DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli
    • Kenyon, C. J. & Walker, G. C. (1980). DNA-damaging agents stimulate gene expression at specific loci in Escherichia coli. Proc. Natl Acad. Sci. USA, 77, 2819-2823.
    • (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 2819-2823
    • Kenyon, C.J.1    Walker, G.C.2
  • 13
    • 0024786678 scopus 로고
    • The DNA unwinding element: A novel, cis-acting component that facilitates opening of the Escherichia coli replication origin
    • Kowalski, D. & Eddy M. J. (1989). The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin. EMBO J. 8, 4335-4344.
    • (1989) EMBO J. , vol.8 , pp. 4335-4344
    • Kowalski, D.1    Eddy, M.J.2
  • 14
    • 0342927819 scopus 로고
    • Stable DNA unwinding, not breathing, accounts for single-strand-specific nuclease hypersensitivity of specific A + T-rich sequences
    • Kowalski, D., Natale, D. A. & Eddy M. J. (1988). Stable DNA unwinding, not breathing, accounts for single-strand-specific nuclease hypersensitivity of specific A + T-rich sequences. Proc. Natl Acad. Sci. USA, 85, 9464-9468.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 9464-9468
    • Kowalski, D.1    Natale, D.A.2    Eddy, M.J.3
  • 15
    • 0020316054 scopus 로고
    • The SOS regulatory system of Escherichia coli
    • Little, J. W. & Mount, D. W. (1982). The SOS regulatory system of Escherichia coli. Cell, 29, 11-22.
    • (1982) Cell , vol.29 , pp. 11-22
    • Little, J.W.1    Mount, D.W.2
  • 16
    • 0023433855 scopus 로고
    • Supercoiling of the DNA template during RNA transcription
    • Liu, L. F. & Wang, J. C. (1987). Supercoiling of the DNA template during RNA transcription. Proc. Natl Acad. Sci. USA, 84, 7024-7027.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 7024-7027
    • Liu, L.F.1    Wang, J.C.2
  • 17
    • 0025981429 scopus 로고
    • A physiological role for DNA supercoiling in the anaerobic regulation of colicin gene expression
    • Malkhosyan, S. R., Panchenko, Y. A. & Rekesh, A. N. (1991). A physiological role for DNA supercoiling in the anaerobic regulation of colicin gene expression. Mol. Gen. Genet. 225, 342-345.
    • (1991) Mol. Gen. Genet. , vol.225 , pp. 342-345
    • Malkhosyan, S.R.1    Panchenko, Y.A.2    Rekesh, A.N.3
  • 18
    • 0026548222 scopus 로고
    • DNA helical stability accounts for mutational defects in a yeast replication origin
    • Natale, D. A., Schubert, A. E. & Kowalski, D. (1992). DNA helical stability accounts for mutational defects in a yeast replication origin. Proc. Natl Acad. Sci. USA, 89, 2654-2658.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 2654-2658
    • Natale, D.A.1    Schubert, A.E.2    Kowalski, D.3
  • 19
    • 0025988205 scopus 로고
    • Synonymous codon usage in Saccharomyces cerevisiae
    • Sharp, P. M. & Cowe, E. (1991). Synonymous codon usage in Saccharomyces cerevisiae. Yeast, 7, 657-678.
    • (1991) Yeast , vol.7 , pp. 657-678
    • Sharp, P.M.1    Cowe, E.2
  • 20
    • 0024968110 scopus 로고
    • Transcription-driven supercoiling of DNA: Direct biochemical evidence from in vitro studies
    • Tsao, Y.-P., Wu, H.-Y. & Liu, L. F. (1989). Transcription-driven supercoiling of DNA: direct biochemical evidence from in vitro studies. Cell, 56, 111-118.
    • (1989) Cell , vol.56 , pp. 111-118
    • Tsao, Y.-P.1    Wu, H.-Y.2    Liu, L.F.3
  • 21
    • 0025185341 scopus 로고
    • The DNA unwinding element in a yeast replication origin functions independently of easily unwound sequences present elsewhere on a plasmid
    • Umek, R. M. & Kowalski, D. (1990). The DNA unwinding element in a yeast replication origin functions independently of easily unwound sequences present elsewhere on a plasmid. Nucl. Acids Res. 18, 6601-6605.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 6601-6605
    • Umek, R.M.1    Kowalski, D.2
  • 22
    • 0021877196 scopus 로고
    • Mechanisms determining aerobic or anaerobic growth in the facultative anaerobe Salmonella typhimurium
    • Yamamoto, N. & Droffner, M. L. (1985). Mechanisms determining aerobic or anaerobic growth in the facultative anaerobe Salmonella typhimurium. Proc. Natl Acad. Sci. USA, 82, 2077-2081.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 2077-2081
    • Yamamoto, N.1    Droffner, M.L.2
  • 23
    • 0020108296 scopus 로고
    • DNA sequence required for efficient transcription termination in yeast
    • Zaret, K. S. & Sherman, F. (1982). DNA sequence required for efficient transcription termination in yeast. Cell, 28, 563-573.
    • (1982) Cell , vol.28 , pp. 563-573
    • Zaret, K.S.1    Sherman, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.