Vanilla mosaic virus isolates from French Polynesia and the Cook Islands are Dasheen mosaic virus strains that exclusively infect vanilla

Archives of Virology

Volumn 151, Issue 5, 2006, Pages 905-919

  Farreyrol, K ^a   Pearson, M N ^a   Grisoni, M ^b   Cohen, D ^c   Beck, D ^c  

^a UNIVERSITY OF AUCKLAND   (New Zealand)

^b CIRAD   (France)

^c THE NEW ZEALAND INSTITUTE FOR PLANT AND FOOD RESEARCH LIMITED   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN;

3' UNTRANSLATED REGION; AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; COMPARATIVE STUDY; DNA SEQUENCE; GENE DELETION; GENETIC POLYMORPHISM; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT DISEASE; POLYNESIA; POTYVIRUS; PROTEIN MOTIF; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; VANILLA; VIROLOGY;

3' UNTRANSLATED REGIONS; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; CAPSID PROTEINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; POLYMORPHISM, GENETIC; POLYNESIA; POTYVIRUS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE DELETION; SEQUENCE HOMOLOGY; VANILLA;

APHIDIDAE; DASHEEN MOSAIC VIRUS; NIA; ORCHIDACEAE; POTYVIRIDAE; POTYVIRUS; VANILLA MOSAIC VIRUS; VANILLA TAHITENSIS;

EID: 33645979039     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-005-0680-0     Document Type: Article

References (52)

1. MJ Adams JF Antoniw CM Fauquet 2005 Molecular criteria for genus and species discrimination within the family Potyviridae Arch Virol 150 459 479
2. PH Berger 1992 The usefulness of aphid transmission as a taxonomic criterion for potyviruses Arch Virol Suppl 5 251 255
3. L Bos 1992 Potyviruses, chaos or order? Arch Virol Suppl 5 31 46
4. Brunt A, Crabtree K, Dallwitz M, Gibbs A, Watson L (1996) Viruses of plants: descriptions and lists from the VIDE database. C.A.B. International, UK
5. AA Brunt 1992 The general properties of potyviruses Arch Virol Suppl 5 3 16
6. J Chen J Chen J Chen MJ Adams 2001 Molecular characterisation of an isolate of Dasheen mosaic virus from Zantedeshia aethiopica in China and comparisons in the genus Potyvirus Arch Virol 146 1821 1829
7. D Colinet J Kummert O Duterme P Lepoivre 1995 Detection of plant viruses by PCR using group or virus specific primers (potyviruses, bymoviruses) Bull OEPP/EPPO Bull 25 289 299
8. G Deborré W Jelkmann E Maiss 1995 Biological and molecular biological investigations of several plum pox virus (PPV) isolates Acta Horticult 386 253 262
9. S Dinant H Lot J Albouy C Kuziak M Meyer S Astier-Manifacier 1991 Nucleotide sequence of the 3′ terminal region of lettuce mosaic potyvirus RNA shows a Gln/Val dipeptide at the cleavage site between the polymerase and the coat protein Arch Virol 116 235 252
10. WG Dougherty JC Carrington 1988 Expression and function of potyviral gene products Annu Rev Phytopathol 26 123 143
11. HJ Dyson PE Wright 2002 Coupling of folding and binding for unstructured proteins Curr Opin Struct Biol 12 54 60
12. Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (2005) Virus taxonomy. The Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier/Academic Press, London
13. S Flasinski BG Cassidy 1998 Potyvirus aphid transmission requires helper component and homologous coat protein for maximal efficiency Arch Virol 143 2159 2172
14. MJ Frenkel JM Jilka DD Shukla CW Ward 1992 Differentiation of potyviruses and their strains by hybridization with the 3′ non-coding region of the viral genome J Virol Methods 36 51 62
15. A Gal-On Y Antignus A Rosner B Raccah 1992 A zucchini yellow mosaic virus coat protein gene mutation restores aphid transmissibility but has no effect on multiplication J Gen Virol 73 2183 2187
16. M Grisoni F Davidson C Hyrondelle K Farreyrol ML Caruana M Pearson 2004 Nature, incidence and symptomatology of viruses infecting Vanilla tahitensis in French Polynesia Plant Dis 88 119 124
17. TA Hall 1999 BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acids Symp Ser 41 95 98
18. JM Hancock W Chaleeprom W Chaleeprom J Dale A Gibbs 1995 Replication slippage in the evolution of potyviruses J Gen Virol 76 3229 3232
19. IE Johansen KE Keller WG Dougherty RO Hampton 1996 Biological and molecular properties of a pathotype P-1 and a pathotype P-4 isolate of pea seed-borne mosaic virus J Gen Virol 77 1329 1333
20. R Jordan MA Guaragna G Kinard S Lynn 2002 Detection and first report of Dasheen mosaic virus and a second potyvirus infecting the terrestrial orchid Spiranthes cernua Acta Horticult 568 253 260
21. SA Langeveld JM Dore J Memelink AFLM Derks CIM van der Vlugt CJ Asjes JF Bol 1991 Identification of potyviruses using the polymerase chain reaction with degenerate primers J Gen Virol 72 1531 1541
22. H Lecoq DE Purcifull 1992 Biological variability of potyviruses, an example: zucchini yellow mosaic virus Arch Virol Suppl 5 229 234
23. K-C Lee PH Mahtani C-G Chng S-M Wong 1997 Sequence and phylogenetic analysis of the cytoplasmic inclusion protein gene of zucchini yellow mosaic potyvirus: its role in the classification of the Potyviridae Virus Genes 14 41 53
24. RH Li FW Zettler E Hiebert DE Purcifull FJ Morales 1999 Differentiation of dasheen mosaic potyvirus isolates based on variability in the apparent size of the capsid protein in Western blots J Phytopathol 147 359 364
25. JJ López-Moya T Canto JR Díaz-Ruíz D López-Abella 1995 Transmission by aphids of a naturally non-transmissible plum pox virus isolate with the aid of potato virus Y helper component J Gen Virol 76 2293 2297
26. JJ López-Moya RY Wang TP Pirone 1999 Context of the coat protein DAG motif affects potyvirus transmissibility by aphids J Gen Virol 80 3281 3288
27. AM Mackenzie M Nolan K-J Wei MA Clements D Gowanlock BJ Wallace AJ Gibbs 1998 Ceratobium mosaic potyvirus: another virus from orchids Arch Virol 143 903 914
28. E Maiss U Timpe A Brisske W Jelkmann R Casper G Himmler D Mattanovich HWD Katinger 1989 The complete nucleotide sequence of plum pox virus RNA J Gen Virol 70 513 524
29. E Maiss R Casper G Deborré W Jelkmann 1995 Complete nucleotide sequence of a plum pox potyvirus isolate (PPV-SC) deriving from sour cherries and influence of a coat protein sequence motif on aphid transmission Acta Horticult 386 340 345
30. DP Martin C Williamson D Posada 2004 RDP2: recombination detection and analysis from sequence alignments Bioinformatics 20 1 3
31. RA Mumford SE Seal 1997 Rapid single-tube immunocapture RT-PCR for the detection of two yam potyviruses J Virol Methods 69 73 79
32. K Namba 2001 Roles of partly unfolded conformations in macromolecular self-assembly Genes Cells 6 1 12
33. SS Pappu HR Pappu R Lastra CL Niblett 1994 Variability in the length of the amino terminal sequence contributes to the capsid protein diversity among dasheen mosaic potyvirus isolates Arch Virol 136 407 413
34. SS Pappu HR Pappu EP Rybicki CL Niblett 1994 Unusual amino-terminal sequence repeat characterizes the capsid protein of dasheen mosaic potyvirus J Gen Virol 75 239 242
35. MN Pearson SP Pone 1988 Viruses of vanilla in Tonga Australasian Plant Pathol 17 59 60
36. MN Pearson AA Brunt SP Pone 1990 Some hosts and properties of a potyvirus infecting Vanilla fragrans (Orchidaceae) in the Kingdom of Tonga J Phytopathol 128 46 54
37. MN Pearson GVH Jackson SP Pone RLJ Howitt 1993 Vanilla viruses in the South Pacific Plant Pathol 42 127 131
38. MN Pearson JE Thomas JW Randles 1994 Detection of an unidentified potyvirus from Roystonea regia palm using the polymerase chain reaction and degenerate, potyvirus specific, primers and potential problems arising from the amplification of host plant DNA sequences J Virol Methods 50 211 218
39. AG Power 2000 Insect transmission of plant viruses: a constraint on virus variability Curr Opin Plant Biol 3 336 340
40. F Revers O Le Gall T Candresse M Le Romancer J Dunez 1996 Frequent occurrence of recombinant potyvirus isolates J Gen Virol 77 1953 1965
41. MJ Roossinck 1997 Mechanisms of plant virus evolution Annu Rev Phytopathol 35 191 209
42. DD Shukla CW Ward 1988 Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group J Gen Virol 69 2703 2710
43. DD Shukla R Lauricella CW Ward 1992 Serology of potyviruses: current problems and some solutions Arch Virol Suppl 5 57 69
44. Shukla DD, Ward CW, Brunt AA (1994) The Potyviridae. Centre for Agriculture and Biosciences International, Cambridge University Press, Cambridge
45. Swofford DL (2001) PAUP*. Phylogenetic analysis using parsimony (*and other methods). Sinauer Associates, Sunderland, Massachusetts
46. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The ClustalX Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 24 4876 4882
47. VN Uversky 2002 What does it mean to be natively unfolded? Eur J Biochem 269 2 12
48. van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (2000) Virus taxonomy: classification and nomenclature of viruses. Academic Press, London San Diego
49. YY Wang MN Pearson 1992 Some characteristics of potyvirus isolates from Vanilla tahitensis in French Polynesia and the Cook Islands J Phytopathol 135 71 76
50. YY Wang DL Beck RC Gardner MN Pearson 1993 Nucleotide sequence, serology and symptomatology suggest that Vanilla necrosis potyvirus is a strain of Watermelon mosaic virus II Arch Virol 129 93 103
51. GC Wisler FW Zettler L Mu 1987 Virus infections of Vanilla and other orchids in French Polynesia Plant Dis 71 1125 1129
52. XW Xiao MJ Frenkel DS Teakle CW Ward DD Shukla 1993 Sequence diversity in the surface-exposed amino-terminal region of the coat proteins of seven strains of sugarcane mosaic virus correlates with their host range Arch Virol 132 399 408