메뉴 건너뛰기




Volumn 8, Issue , 2007, Pages

Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments

Author keywords

[No Author keywords available]

Indexed keywords

F BOX PROTEIN; PLANT DNA; TRANSCRIPTION FACTOR;

EID: 38449086383     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-8-112     Document Type: Article
Times cited : (37)

References (64)
  • 1
    • 85031285712 scopus 로고    scopus 로고
    • Potato Genetics: Molecular Maps and More in Biotechnology in Agriculture and Forestry
    • Springer-Verlag, Berlin, Heidelberg Lörz H, Wenzel G
    • Gebhardt C Potato Genetics: Molecular Maps and More in Biotechnology in Agriculture and Forestry Molecular Marker Systems Springer-Verlag, Berlin, Heidelberg Lörz H, Wenzel G 2004, 55:215-227
    • (2004) Molecular Marker Systems , vol.55 , pp. 215-227
    • Gebhardt, C.1
  • 2
    • 0000258233 scopus 로고
    • RFLP map based on a common set of clones reveal modes of chromosomal evolution in potato and tomato
    • 1203572 17246486
    • Bonierable M Plaisted RL Tanksley SD RFLP map based on a common set of clones reveal modes of chromosomal evolution in potato and tomato Genetics 1988, 120:1095-1103 1203572 17246486
    • (1988) Genetics , vol.120 , pp. 1095-1103
    • Bonierable, M.1    Plaisted, R.L.2    Tanksley, S.D.3
  • 4
    • 0037854681 scopus 로고    scopus 로고
    • Comparative mapping between potato (Solanum tuberosum) and A. thaliana reveals structurally conserved domains and ancient duplications in the potato genome
    • Gebhardt C Walkemeier B Henselewski H Barakat A Delseny M Stüber K Comparative mapping between potato (Solanum tuberosum) and A. thaliana reveals structurally conserved domains and ancient duplications in the potato genome The Plant J 2003, 34:529-541
    • (2003) The Plant J , vol.34 , pp. 529-541
    • Gebhardt, C.1    Walkemeier, B.2    Henselewski, H.3    Barakat, A.4    Delseny, M.5    Stüber, K.6
  • 6
    • 0034792463 scopus 로고    scopus 로고
    • Organization of genes controlling disease resistance in the potato genome
    • 11701860
    • Gebhardt C Valkonen JPT Organization of genes controlling disease resistance in the potato genome Annu Rev Phytopathol 2001, 39:79-102. 11701860
    • (2001) Annu Rev Phytopathol , vol.39 , pp. 79-102
    • Gebhardt, C.1    Valkonen, J.P.T.2
  • 7
    • 0028860766 scopus 로고
    • A high-resolution map of the vicinity of the R1 locus on chromosome V of potato based on RFLP and AFLP markers
    • 8552036
    • Meksem K Leister D Peleman J Zabeau M Salamini F Gebhardt C A high-resolution map of the vicinity of the R1 locus on chromosome V of potato based on RFLP and AFLP markers Mol Gen Genet 1995, 249:74-81. 8552036
    • (1995) Mol Gen Genet , vol.249 , pp. 74-81
    • Meksem, K.1    Leister, D.2    Peleman, J.3    Zabeau, M.4    Salamini, F.5    Gebhardt, C.6
  • 8
    • 0001205410 scopus 로고    scopus 로고
    • A Potato hypersensitive resistance gene against potato virus X maps to a resistance gene cluster on chromosome V
    • De Jong W Forsyth A Leister D Gebhardt C Baulcombe DC A Potato hypersensitive resistance gene against potato virus X maps to a resistance gene cluster on chromosome V Theor Appl Genet 1997, 5:153-162
    • (1997) Theor Appl Genet , vol.5 , pp. 153-162
    • De Jong, W.1    Forsyth, A.2    Leister, D.3    Gebhardt, C.4    Baulcombe, D.C.5
  • 9
    • 0025806612 scopus 로고
    • RFLP mapping on potato chromosomes of two genes controlling extreme resistance to potato virus X (PVX)
    • 1675423
    • Ritter E Debener T Barone A Salamini F Gebhardt C RFLP mapping on potato chromosomes of two genes controlling extreme resistance to potato virus X (PVX) Mol Gen Genet 1991, 227:81-85 1675423
    • (1991) Mol Gen Genet , vol.227 , pp. 81-85
    • Ritter, E.1    Debener, T.2    Barone, A.3    Salamini, F.4    Gebhardt, C.5
  • 10
    • 0026695146 scopus 로고
    • The R1 gene conferring race-specific resistance to Phytophtora infestans in potato is located on potato chromosome V
    • 1351246
    • Leonards-Schippers C Gieffers W Gebhardt C Salamini F The R1 gene conferring race-specific resistance to Phytophtora infestans in potato is located on potato chromosome V Mol Gen Genet 1992, 233:278-283 1351246
    • (1992) Mol Gen Genet , vol.233 , pp. 278-283
    • Leonards-Schippers, C.1    Gieffers, W.2    Gebhardt, C.3    Salamini, F.4
  • 11
    • 0028274821 scopus 로고
    • Quantitative resistance to Phytophthora infestans in potato: A case study for QTL mapping in an allogamous plant species
    • 1205955 7914505
    • Leonards-Schippers C Gieffers W Schäfer-Pregl R Ritter E Knapp SJ Salamini F Gebhardt C Quantitative resistance to Phytophthora infestans in potato: A case study for QTL mapping in an allogamous plant species Genetics 1994, 137:67-77. 1205955 7914505
    • (1994) Genetics , vol.137 , pp. 67-77
    • Leonards-Schippers, C.1    Gieffers, W.2    Schäfer-Pregl, R.3    Ritter, E.4    Knapp, S.J.5    Salamini, F.6    Gebhardt, C.7
  • 15
    • 0027951045 scopus 로고
    • Quantitatively-inherited resistance to Globodera pallida is dominated by one major locus in Solanum spegazzinii
    • Kreike CM De Koning JRA Vinke JH Van Ooijen JW Stiekema WJ Quantitatively-inherited resistance to Globodera pallida is dominated by one major locus in Solanum spegazzinii Theor Appl Genet 1994, 88:764-769
    • (1994) Theor Appl Genet , vol.88 , pp. 764-769
    • Kreike, C.M.1    De Koning, J.R.A.2    Vinke, J.H.3    Van Ooijen, J.W.4    Stiekema, W.J.5
  • 18
    • 33750434321 scopus 로고    scopus 로고
    • Single nucleotide polymorphism (SNP) genotyping as basis for developing a PCR-based marker highly diagnostic for potato varieties with high resistance to Globodera pallida pathotype Pa2/3
    • Sattarzadeh A Achenbach U Lübeck J Strahwald J Tacke E Hofferbert HR Rotstein T Gebhardt C Single nucleotide polymorphism (SNP) genotyping as basis for developing a PCR-based marker highly diagnostic for potato varieties with high resistance to Globodera pallida pathotype Pa2/3 Mol Breed 2006, 4:301-312
    • (2006) Mol Breed , vol.4 , pp. 301-312
    • Sattarzadeh, A.1    Achenbach, U.2    Lübeck, J.3    Strahwald, J.4    Tacke, E.5    Hofferbert, H.R.6    Rotstein, T.7    Gebhardt, C.8
  • 21
    • 0034000967 scopus 로고    scopus 로고
    • Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: Application to the Rx2 locus in potato
    • 10652152
    • Bendahmane A Querci M Kanyuka K Baulcombe DC Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: Application to the Rx2 locus in potato Plant J 2000, 21:73-81 10652152
    • (2000) Plant J , vol.21 , pp. 73-81
    • Bendahmane, A.1    Querci, M.2    Kanyuka, K.3    Baulcombe, D.C.4
  • 22
    • 0036112532 scopus 로고    scopus 로고
    • The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genes
    • Ballvora A Ercolano MR Weiss J Meksem K Bormann CA Oberhagemann P Salamini F Gebhardt C The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genes The Plant J 2002, 30:361-371
    • (2002) The Plant J , vol.30 , pp. 361-371
    • Ballvora, A.1    Ercolano, M.R.2    Weiss, J.3    Meksem, K.4    Bormann, C.A.5    Oberhagemann, P.6    Salamini, F.7    Gebhardt, C.8
  • 23
    • 32944479048 scopus 로고    scopus 로고
    • Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response
    • 16497589
    • Chisholm ST Coaker G Day B Staskawicz BJ Host-Microbe Interactions: Shaping the Evolution of the Plant Immune Response Cell 2006, 124:803-814. 16497589
    • (2006) Cell , vol.124 , pp. 803-814
    • Chisholm, S.T.1    Coaker, G.2    Day, B.3    Staskawicz, B.J.4
  • 24
    • 0001966685 scopus 로고
    • Potato breeding. Problems and perspectives
    • Paul Parey Verlag, Berlin and Heidelberg
    • Ross H Potato breeding. Problems and perspectives Adv Plant Breed Paul Parey Verlag, Berlin and Heidelberg 1986 Supplement 13
    • (1986) Adv Plant Breed , Issue.SUPPL. 13
    • Ross, H.1
  • 26
    • 0001226702 scopus 로고
    • The genetic complexity of fungal resistance genes in plants
    • Pryor T Ellis J The genetic complexity of fungal resistance genes in plants Adv Plant Pathol 1993, 10:281-305
    • (1993) Adv Plant Pathol , vol.10 , pp. 281-305
    • Pryor, T.1    Ellis, J.2
  • 27
    • 1242265516 scopus 로고    scopus 로고
    • Assessing genetic potential in germ plasm collections of crop plants by marker-trait association: A case study for potatoes with quantitative variation of resistance to late blight and maturity type
    • Gebhardt C Ballvora A Walkemeier B Oberhagemann P Schüler K Assessing genetic potential in germ plasm collections of crop plants by marker-trait association: A case study for potatoes with quantitative variation of resistance to late blight and maturity type Mol Breed 2004, 13:93-102
    • (2004) Mol Breed , vol.13 , pp. 93-102
    • Gebhardt, C.1    Ballvora, A.2    Walkemeier, B.3    Oberhagemann, P.4    Schüler, K.5
  • 28
    • 20444391743 scopus 로고    scopus 로고
    • To clone or not to clone plant QTLs: Present and future challenges
    • 15949764
    • Salvi S Tuberosa R To clone or not to clone plant QTLs: Present and future challenges Trends Plant Sci 2005, 10:297-304. 15949764
    • (2005) Trends Plant Sci , vol.10 , pp. 297-304
    • Salvi, S.1    Tuberosa, R.2
  • 29
    • 0035408587 scopus 로고    scopus 로고
    • Genome annotation: From sequence to biology
    • 11433356
    • Stein L Genome annotation: From sequence to biology Nature Reviews Genetics 2001, 2:493-503. 11433356
    • (2001) Nature Reviews Genetics , vol.2 , pp. 493-503
    • Stein, L.1
  • 30
    • 0037047037 scopus 로고    scopus 로고
    • Intraspecific violation of genetic colinearity and its implications in maize
    • 123182 12060715
    • Fu H Dooner HK Intraspecific violation of genetic colinearity and its implications in maize Proc Natl Acad Sci 2002, 99:9573-9578. 123182 12060715
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 9573-9578
    • Fu, H.1    Dooner, H.K.2
  • 31
    • 20344407697 scopus 로고    scopus 로고
    • Evolution of DANN Sequence Nonhomologies among Maize Inbreds
    • 548811 15659640
    • Brunner S Fengler K Morgante M Tingey S Rafalski A Evolution of DANN Sequence Nonhomologies among Maize Inbreds Plant Cell 2005, 17:343-360. 548811 15659640
    • (2005) Plant Cell , vol.17 , pp. 343-360
    • Brunner, S.1    Fengler, K.2    Morgante, M.3    Tingey, S.4    Rafalski, A.5
  • 32
    • 2942733466 scopus 로고    scopus 로고
    • The nematode gene, Mi-1, is associated with an inverted chromosomal segment in susceptible compared to resistant tomato
    • 14963654
    • Seah S Yaghoobi J Rossi M Gleason CA Williamson VM The nematode gene, Mi-1, is associated with an inverted chromosomal segment in susceptible compared to resistant tomato Theor Appl Genet 2004, 108:1635-1642. 14963654
    • (2004) Theor Appl Genet , vol.108 , pp. 1635-1642
    • Seah, S.1    Yaghoobi, J.2    Rossi, M.3    Gleason, C.A.4    Williamson, V.M.5
  • 33
    • 0025606334 scopus 로고
    • Localization by restriction fragment length polymorphism mapping in potato of a major dominant gene conferring resistance to the potato cyst nematode Globodera rostochiensis
    • 1980523
    • Barone A Ritter E Schachtschabel U Debener T Salamini F Gebhardt C Localization by restriction fragment length polymorphism mapping in potato of a major dominant gene conferring resistance to the potato cyst nematode Globodera rostochiensis Mol Gen Genet 1990, 224:177-182. 1980523
    • (1990) Mol Gen Genet , vol.224 , pp. 177-182
    • Barone, A.1    Ritter, E.2    Schachtschabel, U.3    Debener, T.4    Salamini, F.5    Gebhardt, C.6
  • 34
    • 0029831621 scopus 로고    scopus 로고
    • Recombination around Tm2a and Mi resistance genes in different crosses of Lycopersicom peruvianum
    • Ganal MW Tanksley SD Recombination around Tm2a and Mi resistance genes in different crosses of Lycopersicom peruvianum Theor Appl Genet 1996, 92:101-108
    • (1996) Theor Appl Genet , vol.92 , pp. 101-108
    • Ganal, M.W.1    Tanksley, S.D.2
  • 35
    • 0032415864 scopus 로고    scopus 로고
    • Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process
    • Michelmore RW Meyers BC Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process Genome Res 1998, 8:9828-9832
    • (1998) Genome Res , vol.8 , pp. 9828-9832
    • Michelmore, R.W.1    Meyers, B.C.2
  • 36
    • 0034920406 scopus 로고    scopus 로고
    • Sequence and Analysis of the Tomato JOINTLESS Locus
    • 116490 11457984
    • Mao L Begum D Goff SA Wing RA Sequence and Analysis of the Tomato JOINTLESS Locus Plant Physiol 2001, 126(3):1331-1340 116490 11457984
    • (2001) Plant Physiol , vol.126 , Issue.3 , pp. 1331-1340
    • Mao, L.1    Begum, D.2    Goff, S.A.3    Wing, R.A.4
  • 37
    • 0035032414 scopus 로고    scopus 로고
    • Comparative sequence analysis reveals extensive microcolinearity in the Lateral Suppressor regions of the tomato, A. thaliana, and Capsella genomes
    • 135537 11283350
    • Rossberg M Theres K Acarkan A Herrero R Schmitt T Schumacher K Schmitz G Schmidt R Comparative sequence analysis reveals extensive microcolinearity in the Lateral Suppressor regions of the tomato, A. thaliana, and Capsella genomes The Plant Cell 2001, 13:979-988 135537 11283350
    • (2001) The Plant Cell , vol.13 , pp. 979-988
    • Rossberg, M.1    Theres, K.2    Acarkan, A.3    Herrero, R.4    Schmitt, T.5    Schumacher, K.6    Schmitz, G.7    Schmidt, R.8
  • 38
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant A. thaliana
    • The A. thaliana Genome Initiative 11130711
    • The A. thaliana Genome Initiative Analysis of the genome sequence of the flowering plant A. thaliana Nature 2000, 408:796815 11130711
    • (2000) Nature , vol.408 , pp. 796-815
  • 39
    • 63849296352 scopus 로고    scopus 로고
    • Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged species
    • The Rice Chromosome 3 Sequencing Consortium
    • The Rice Chromosome 3 Sequencing Consortium Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged species Genome 2006, 15:1284-1291
    • (2006) Genome , vol.15 , pp. 1284-1291
  • 40
    • 2642665514 scopus 로고    scopus 로고
    • A contigous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome
    • Panstruga R Büschges R Piffanelli P Schulze-Lefert P A contigous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome Nuc Acid Res 1998, 26:1056-1062
    • (1998) Nuc Acid Res , vol.26 , pp. 1056-1062
    • Panstruga, R.1    Büschges, R.2    Piffanelli, P.3    Schulze-Lefert, P.4
  • 42
    • 19544386804 scopus 로고    scopus 로고
    • The A. thaliana F-box protein TIR1 is an auxin receptor
    • 15917798
    • Kepinski S Leyser O The A. thaliana F-box protein TIR1 is an auxin receptor Nature 2005, 435:446-451 15917798
    • (2005) Nature , vol.435 , pp. 446-451
    • Kepinski, S.1    Leyser, O.2
  • 43
    • 0034476823 scopus 로고    scopus 로고
    • Regulators of cell death in disease resistance
    • 11199395
    • Shirazu K Schulze-Lefert P Regulators of cell death in disease resistance Plant Mol Biol 2000, 44:371-385. 11199395
    • (2000) Plant Mol Biol , vol.44 , pp. 371-385
    • Shirazu, K.1    Schulze-Lefert, P.2
  • 44
    • 0346965742 scopus 로고    scopus 로고
    • Plant Immunity: The origami of receptor activation
    • 14711430
    • Schulze-Lefert P Plant Immunity: The origami of receptor activation Curr Biol 2004, 14:R22-R24. 14711430
    • (2004) Curr Biol , vol.14
    • Schulze-Lefert, P.1
  • 45
    • 0037227689 scopus 로고    scopus 로고
    • Exploring plant genomes by RNA-induced gene silencing
    • 12509751
    • Waterhause PM Helliwell CA Exploring plant genomes by RNA-induced gene silencing Nat Rev Genet 2003, 4:29-38. 12509751
    • (2003) Nat Rev Genet , vol.4 , pp. 29-38
    • Waterhause, P.M.1    Helliwell, C.A.2
  • 46
    • 0037393134 scopus 로고    scopus 로고
    • Comparison of genes among cereals
    • Ware D Stein L Comparison of genes among cereals Curr Op Plant Biol 2003, 6:121-127
    • (2003) Curr Op Plant Biol , vol.6 , pp. 121-127
    • Ware, D.1    Stein, L.2
  • 47
    • 0037391473 scopus 로고    scopus 로고
    • The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis
    • Bennetzen JL Ma J The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis Curr Op Plant Biol 2003, 6:128-133
    • (2003) Curr Op Plant Biol , vol.6 , pp. 128-133
    • Bennetzen, J.L.1    Ma, J.2
  • 48
    • 0034255126 scopus 로고    scopus 로고
    • Comparing sequenced segments of the tomato and A. thaliana genomes: Large-scale duplication followed by selective gene loss creates a network of synteny
    • 16832 10908680
    • Ku H.-M Vision T Liu J Tanksley SD Comparing sequenced segments of the tomato and A. thaliana genomes: Large-scale duplication followed by selective gene loss creates a network of synteny Proc Natl Acad Sci 2000, 97:9121-9126. 16832 10908680
    • (2000) Proc Natl Acad Sci , vol.97 , pp. 9121-9126
    • Ku, H.-M.1    Vision, T.2    Liu, J.3    Tanksley, S.D.4
  • 51
    • 0033792906 scopus 로고    scopus 로고
    • Two large-insert soybean genomic libraries constructed in a binary vector: Applications in chromosome walking and genome wide physical mapping
    • Meksem K Zobrist K Ruben E Hyten D Quanzhou T Zhang H-B Lightfoot DA Two large-insert soybean genomic libraries constructed in a binary vector: applications in chromosome walking and genome wide physical mapping Theor Appl Genet 2000, 101:747-755
    • (2000) Theor Appl Genet , vol.101 , pp. 747-755
    • Meksem, K.1    Zobrist, K.2    Ruben, E.3    Hyten, D.4    Quanzhou, T.5    Zhang, H.-B.6    Lightfoot, D.A.7
  • 52
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • 10827456
    • Rice P Longden I Bleasby A EMBOSS: The European Molecular Biology Open Software Suite Trends Genet 2000, 16(6):276-7. 10827456
    • (2000) Trends Genet , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 53
    • 0029654258 scopus 로고
    • A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
    • 8566757
    • Sonnhammer EL Durbin R A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis Gene 1995, 167:GC1-GC10. 8566757
    • (1995) Gene , vol.167
    • Sonnhammer, E.L.1    Durbin, R.2
  • 54
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark.hmm: New solutions for gene finding
    • Lukashin AV Borodovsky M GeneMark.hmm: New solutions for gene finding Nuc Acids Res 1998, 26:1107-1115
    • (1998) Nuc Acids Res , vol.26 , pp. 1107-1115
    • Lukashin, A.V.1    Borodovsky, M.2
  • 55
    • 0034065724 scopus 로고    scopus 로고
    • Ab initio Gene Finding in Drosophila Genomic DNA
    • 310882 10779491
    • Salamov AA Solovyev VV Ab initio Gene Finding in Drosophila Genomic DNA Genome Res 2000, 10:516-522. 310882 10779491
    • (2000) Genome Res , vol.10 , pp. 516-522
    • Salamov, A.A.1    Solovyev, V.V.2
  • 58
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch A Apweiler R The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000 Nuc Acids Res 2000, 28:45-48
    • (2000) Nuc Acids Res , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 61
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan - An integration platform for the signature-recognition methods in InterPro
    • 11590104
    • Zdobnov EM Apweiler R InterProScan - an integration platform for the signature-recognition methods in InterPro Bioinformatics 2001, 17:847-848. 11590104
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2
  • 62
    • 0035861990 scopus 로고    scopus 로고
    • Automatic Clustering of Orthologs and In-paralogs from Pairwise Species Comparisons
    • Remm M Storm CEV Sonnhammer ELL Automatic Clustering of Orthologs and In-paralogs from Pairwise Species Comparisons JMB 2001, 14:1041-1052
    • (2001) JMB , vol.14 , pp. 1041-1052
    • Remm, M.1    Storm, C.E.V.2    Sonnhammer, E.L.L.3
  • 64
    • 63849155894 scopus 로고    scopus 로고
    • The Arabidopsis Information Resource http://www.arabidopsis.org


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.