Chromosomally encoded small antisense RNA in Corynebacterium glutamicum

FEMS Microbiology Letters

Volumn 279, Issue 2, 2008, Pages 195-201

  Zemanová, Martina ^a   Kadeřábková, Pavla ^a   Pátek, Miroslav ^a   Knoppová, Monika ^a   Šilar, Radoslav ^a   Nešvera, Jan ^a  

^a INSTITUTE OF MICROBIOLOGY   (Czech Republic)

Author keywords

Antisense RNA; Corynebacterium glutamicum; GntR transcriptional regulator; Heat shock; sRNA

Indexed keywords

AMPICILLIN; ANTIBIOTIC AGENT; BACTERIAL RNA; CHLORAMPHENICOL; CHLORAMPHENICOL ACETYLTRANSFERASE; COMPLEMENTARY DNA; COMPLEMENTARY RNA; KANAMYCIN; MESSENGER RNA; PLASMID DNA;

ARTICLE; BACTERIAL CHROMOSOME; BACTERIUM CULTURE; CORYNEBACTERIUM GLUTAMICUM; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; GNTR GENE; HEAT SHOCK; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLASMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROMOTER REGION; TRANSCRIPTION REGULATION;

5' UNTRANSLATED REGIONS; BACTERIAL PROTEINS; BASE SEQUENCE; CHROMOSOMES, BACTERIAL; CORYNEBACTERIUM GLUTAMICUM; DNA, INTERGENIC; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA, ANTISENSE; RNA, BACTERIAL; SIGMA FACTOR; TRANSCRIPTION INITIATION SITE; TRANSCRIPTION, GENETIC;

CORYNEBACTERIUM GLUTAMICUM;

EID: 38349096676     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2007.01024.x     Document Type: Article

References (32)

1. Birnboim HC Doly J (1979) A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7 : 1513 1523.
2. Brantl S (2002) Antisense RNAs in plasmids: control of replication and maintenance. Plasmid 48 : 165 173.
3. Eikmanns BJ, Thum-Schmitz N, Eggeling L, Ludtke KU Sahm H (1994) Nucleotide sequence, expression and transcriptional analysis of the Corynebacterium glutamicum gltA gene encoding citrate synthase. Microbiology 140 : 1817 1828.
4. Engels S, Schweitzer JE, Ludwig C, Bott M Schaffer S (2004) clpC and clpP1P2 gene expression in Corynebacterium glutamicum is controlled by a regulatory network involving the transcriptional regulators ClgR and HspR as well as the ECF sigma factor sigmaH. Mol Microbiol 52 : 285 302.
5. Fierro-Monti IP, Reid SJ Woods DR (1992) Differential expression of a Clostridium acetobutylicum antisense RNA: implications for regulation of glutamine synthetase. J Bacteriol 74 : 7642 7647.
6. Gottesman S (2005) Micros for microbes: non-coding regulatory RNAs in bacteria. Trends Genet 21 : 399 404.
7. Hanahan D (1985) Techniques for transformation of E. coli. DNA Cloning. A Practical Approach, Vol. 1 Glover DM, ed), pp. 109 135. IRL Press, Oxford, UK.
8. Hermann T (2003) Industrial production of amino acids by coryneform bacteria. J Biotechnol 104 : 155 172.
9. Ikeda M Nakagawa S (2003) The Corynebacterium glutamicum genome: features and impacts on biotechnological processes. Appl Microbiol Biotechnol 62 : 99 109.
10. Johansen J, Rasmussen AA, Overgaard M Valentin-Hansen P (2006) Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins. J Mol Biol 364 : 1 8.
11. Kalinowski J, Bathe B, Bartels D et al 2003) The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of l-aspartate-derived amino acids and vitamins. J Biotechnol 104 : 5 25.
12. Kawano M, Oshima T, Kasai H Mori H (2002) Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli. Mol Microbiol 45 : 333 349.
13. Kawano M, Aravind L Storz G (2007) An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin. Mol Microbiol 64 : 738 754.
14. Licht A, Preis S Brantl S (2005) Implication of CcpN in the regulation of a novel untranslated RNA (SR1) in Bacillus subtilis. Mol Microbiol 58 : 189 206.
15. Liebl W, Bayerl A, Schein B, Stillner U Schleifer KH (1989) High efficiency electroporation of intact Corynebacterium glutamicum cells. FEMS Microbiol Lett 53 : 299 303.
16. Nakunst D, Larisch C, Hüser AT, Tauch A, Pühler A Kalinowski J (2007) The ECF-type sigma factor SigM of Corynebacterium glutamicum ATCC 13032 is involved in transcription of bisulfide stress-related genes. J Bacteriol 189 : 4696 4707.
17. Opdyke JA, Kang JG Storz G (2004) GadY, a small-RNA regulator of acid response genes in Escherichia coli. J Bacteriol 186 : 6698 6705.
18. Ozaki A, Katsumata R, Oka T Furuya A (1984) Functional expression of the genes of Escherichia coli in gram-positive Corynebacterium glutamicum. Mol Gen Genet 196 : 175 178.
19. Pátek M, Nešvera J Hochmannová J (1989) Plasmid cloning vectors replicating in Escherichia coli, amino acid-producing coryneform bacteria and Methylobacillus sp. Appl Microbiol Biotechnol 31 : 65 69.
20. Pátek M, Muth G Wohlleben W (2003a) Function of Corynebacterium glutamicum promoters in Escherichia coli, Streptomyces lividans, and Bacillus subtilis. J Biotechnol 104 : 325 334.
21. Pátek M, Nešvera J, Guyonvarch A, Reyes O Leblon G (2003b) Promoters of Corynebacterium glutamicum. J Biotechnol 104 : 311 323.
22. Pedersen K Gerdes K (1999) Multiple hok genes on the chromosome of Escherichia coli. Mol Microbiol 32 : 1090 1102.
23. Pichon C Felden B (2005) Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains. Proc Natl Acad Sci USA 102 : 14249 14254.
24. Rodrigue S, Provvedi R, Jacques PE, Gaudreau L Manganelli R (2006) The sigma factors of Mycobacterium tuberculosis. FEMS Microbiol Rev 30 : 926 941.
25. Sambrook J, Fritsch EF Maniatis T (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
26. Schäfer A, Tauch A, Jäger W, Kalinowski J, Thierbach G Pühler A (1994) Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145 : 69 73.
27. Shaw WV (1975) Chloramphenicol acetyltransferase from chloramphenicol-resistant bacteria. Methods Enzymol 43 : 735 755.
28. Silvaggi JM, Perkins JB Losick R (2005) Small untranslated RNA antitoxin in Bacillus subtilis. J Bacteriol 187 : 6641 6650.
29. Silvaggi JM, Perkins JB Losick R (2006) Genes for small, noncoding RNAs under sporulation control in Bacillus subtilis. J Bacteriol 188 : 532 541.
30. Storz G, Opdyke JA Wassarman KM (2006) Regulating bacterial transcription with small RNAs. Cold Spring Harbor Symp Quant Biol 71 : 269 273.
31. Udekwu KI Wagner EG (2007) Sigma E controls biogenesis of the antisense RNA MicA. Nucleic Acids Res 35 : 1279 1288.
32. Vašicová P, Abrhámová Z, Nešvera J, Pátek M, Sahm H Eikmanns B (1998) Integrative and autonomously replicating vectors for analysis of promoters in Corynebacterium glutamicum. Biotechnol Techniques 12 : 743 746.