메뉴 건너뛰기




Volumn 58, Issue 1, 2005, Pages 189-206

Implication of CcpN in the regulation of a novel untranslated RNA (SR1) in Bacillus subtilis

Author keywords

[No Author keywords available]

Indexed keywords

UNTRANSLATED RNA;

EID: 26244461596     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2005.04810.x     Document Type: Article
Times cited : (72)

References (43)
  • 1
    • 0031459386 scopus 로고    scopus 로고
    • A small, stable RNA induced by oxidative stress: Role as a pleiotropic regulator and antimutator
    • Altuvia, S., Weinstein-Fischer, D., Zhang, A., Postow, L., and Storz, G. (1997) A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator. Cell 90: 443-453.
    • (1997) Cell , vol.90 , pp. 443-453
    • Altuvia, S.1    Weinstein-Fischer, D.2    Zhang, A.3    Postow, L.4    Storz, G.5
  • 2
    • 0032531720 scopus 로고    scopus 로고
    • The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding
    • Altuvia, S., Zhang, A., Argaman, L., Tiwari, A., and Storz, G. (1998) The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding. EMBO J 20: 6069-6075.
    • (1998) EMBO J , vol.20 , pp. 6069-6075
    • Altuvia, S.1    Zhang, A.2    Argaman, L.3    Tiwari, A.4    Storz, G.5
  • 3
    • 0037154430 scopus 로고    scopus 로고
    • Expression of a small RNA, BS203 RNA, from the yocl-yocJ intergenic region of Bacillus subtilis genome
    • Ando, Y., Asari, S., Suzuma, S., Yamane, K., and Nakamura, K. (2002) Expression of a small RNA, BS203 RNA, from the yocl-yocJ intergenic region of Bacillus subtilis genome. FEMS Microbiol Lett 207: 29-33.
    • (2002) FEMS Microbiol Lett , vol.207 , pp. 29-33
    • Ando, Y.1    Asari, S.2    Suzuma, S.3    Yamane, K.4    Nakamura, K.5
  • 5
    • 0027945225 scopus 로고
    • The CopR protein of plasmid pIP501 acts as transcriptional repressor at the essential repR promoter
    • Brantl, S. (1994) The CopR protein of plasmid pIP501 acts as transcriptional repressor at the essential repR promoter. Mol Microbiol 14: 473-483.
    • (1994) Mol Microbiol , vol.14 , pp. 473-483
    • Brantl, S.1
  • 6
    • 0037012663 scopus 로고    scopus 로고
    • Antisense-RNA regulation and RNA interference
    • Brantl, S. (2002) Antisense-RNA regulation and RNA interference. Biochim Biophys Acta 1575: 15-25.
    • (2002) Biochim Biophys Acta , vol.1575 , pp. 15-25
    • Brantl, S.1
  • 7
    • 0026597383 scopus 로고
    • Copy number control of the streptococcal plasmid pIP501 occurs at three levels
    • Brantl, S., and Behnke, D. (1992) Copy number control of the streptococcal plasmid pIP501 occurs at three levels. Nucleic Acids Res 20: 395-400.
    • (1992) Nucleic Acids Res , vol.20 , pp. 395-400
    • Brantl, S.1    Behnke, D.2
  • 8
    • 0030006258 scopus 로고    scopus 로고
    • An unusually long-lived antisense RNA in plasmid copy number control: In vivo RNAs encoded by the streptococcal plasmid pIP501
    • Brantl, S., and Wagner, E.G.H. (1996) An unusually long-lived antisense RNA in plasmid copy number control: in vivo RNAs encoded by the streptococcal plasmid pIP501. J Mol Biol 255: 275-288.
    • (1996) J Mol Biol , vol.255 , pp. 275-288
    • Brantl, S.1    Wagner, E.G.H.2
  • 9
    • 4944236203 scopus 로고    scopus 로고
    • MicC, a second small-RNA regulator of omp protein expression in Escherichia coli
    • Chen, S., Zhang, A., Blyn, L.G., and Storz, G. (2004) MicC, a second small-RNA regulator of omp protein expression in Escherichia coli. J Bacteriol 186: 6689-6697.
    • (2004) J Bacteriol , vol.186 , pp. 6689-6697
    • Chen, S.1    Zhang, A.2    Blyn, L.G.3    Storz, G.4
  • 10
    • 0035850795 scopus 로고    scopus 로고
    • MicF: An antisense RNA gene involved in response of Escherichia coli to global stress factors
    • Delihas, N., and Forst, S. (2001) MicF: an antisense RNA gene involved in response of Escherichia coli to global stress factors. J Mol Biol 313: 1-12.
    • (2001) J Mol Biol , vol.313 , pp. 1-12
    • Delihas, N.1    Forst, S.2
  • 12
    • 0026463806 scopus 로고
    • Differential expression of a Clostridium acetobutylicum antisense RNA: Implications for regulation of glutamine synthetase
    • Fierro-Monti, I.P., Reid, S.J., and Woods, D.R. (1992) Differential expression of a Clostridium acetobutylicum antisense RNA: implications for regulation of glutamine synthetase. J Bacteriol 174: 7642-7647.
    • (1992) J Bacteriol , vol.174 , pp. 7642-7647
    • Fierro-Monti, I.P.1    Reid, S.J.2    Woods, D.R.3
  • 13
    • 0033582597 scopus 로고    scopus 로고
    • Phosphorylation of either Crh or HPr mediates binding of CcpA to the Bacillus subtilis xyn cre and catabolite repression of the xyn operon
    • Galinier, A., Deutscher, J., and Martin-Verstraete, I. (1999) Phosphorylation of either Crh or HPr mediates binding of CcpA to the Bacillus subtilis xyn cre and catabolite repression of the xyn operon. J Mol Biol 286: 307-314.
    • (1999) J Mol Biol , vol.286 , pp. 307-314
    • Galinier, A.1    Deutscher, J.2    Martin-Verstraete, I.3
  • 14
    • 0025143351 scopus 로고
    • Regulated expression of heterologous genes in Bacillus subtilis using the Tn10 encoded tet regulatory elements
    • Geissendörfer, M., and Hillen, W. (1989) Regulated expression of heterologous genes in Bacillus subtilis using the Tn10 encoded tet regulatory elements. Appl Microbiol Biotechnol 33: 657-663.
    • (1989) Appl Microbiol Biotechnol , vol.33 , pp. 657-663
    • Geissendörfer, M.1    Hillen, W.2
  • 15
    • 20144380295 scopus 로고    scopus 로고
    • Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression
    • Huntzinger, E., Boisset, S., Saveanu, C., Benito, Y., Geissmann, T., Namane, A., et al. (2005) Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression. EMBO J 24: 824-835.
    • (2005) EMBO J , vol.24 , pp. 824-835
    • Huntzinger, E.1    Boisset, S.2    Saveanu, C.3    Benito, Y.4    Geissmann, T.5    Namane, A.6
  • 16
    • 0035170506 scopus 로고    scopus 로고
    • DBTS: A database of Bacillus subtilis promoters and transcription factors
    • Ishii, T., Yoshida, K., Terai, G., Fujita, Y., and Nakai, K. (2001) DBTS: a database of Bacillus subtilis promoters and transcription factors. Nucleic Acids Res 29: 278-280.
    • (2001) Nucleic Acids Res , vol.29 , pp. 278-280
    • Ishii, T.1    Yoshida, K.2    Terai, G.3    Fujita, Y.4    Nakai, K.5
  • 17
    • 0038752612 scopus 로고    scopus 로고
    • Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis
    • Ivanova, N., Sorokin, A., Anderson, I., Galleron, N., Candelon, B., Kapatral, V., et al. (2003) Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis. Nature 423: 87-91.
    • (2003) Nature , vol.423 , pp. 87-91
    • Ivanova, N.1    Sorokin, A.2    Anderson, I.3    Galleron, N.4    Candelon, B.5    Kapatral, V.6
  • 18
    • 0021193861 scopus 로고
    • Construction of a Bacillus subtilis double mutant deficient in extracellular alkaline and neutral proteases
    • Kawamura, F., and Doi, R.H. (1984) Construction of a Bacillus subtilis double mutant deficient in extracellular alkaline and neutral proteases. J Bacteriol 160: 442-444.
    • (1984) J Bacteriol , vol.160 , pp. 442-444
    • Kawamura, F.1    Doi, R.H.2
  • 19
    • 16244392719 scopus 로고    scopus 로고
    • Evidence that Bacillus catabolite control protein CcpA interacts with RNA polymerase to inhibit transcription
    • Kim, J.-H., Yang, Y.-K., and Chambliss, G.H. (2005) Evidence that Bacillus catabolite control protein CcpA interacts with RNA polymerase to inhibit transcription. Mol Microbiol 56: 155-162.
    • (2005) Mol Microbiol , vol.56 , pp. 155-162
    • Kim, J.-H.1    Yang, Y.-K.2    Chambliss, G.H.3
  • 20
    • 0034730125 scopus 로고    scopus 로고
    • A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures
    • Lease, A.L., and Belfort, M. (2000) A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures. Proc Natl Acad Sci USA 97: 9919-9924.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 9919-9924
    • Lease, A.L.1    Belfort, M.2
  • 21
    • 0035205381 scopus 로고    scopus 로고
    • RNA expression analysis using an antisense Bacillus subtilis genome array
    • Lee, J.M., Zhang, S., Saha, S., Santa Anna, S., Jiang, C., and Perkins, J. (2001) RNA expression analysis using an antisense Bacillus subtilis genome array. J Bacteriol 183: 7371-7380.
    • (2001) J Bacteriol , vol.183 , pp. 7371-7380
    • Lee, J.M.1    Zhang, S.2    Saha, S.3    Santa Anna, S.4    Jiang, C.5    Perkins, J.6
  • 22
    • 0032514739 scopus 로고    scopus 로고
    • DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription
    • Majdalani, N., Cunning, C., Sledjeski, D., Eliott, T., and Gottesman, S. (1998) DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc Natl Acad Sci USA 95: 12462-12467.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 12462-12467
    • Majdalani, N.1    Cunning, C.2    Sledjeski, D.3    Eliott, T.4    Gottesman, S.5
  • 23
    • 0037007078 scopus 로고    scopus 로고
    • A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
    • Massé, E., and Gottesman, S. (2002) A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc Natl Acad Sci USA 99: 4620-4625.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 4620-4625
    • Massé, E.1    Gottesman, S.2
  • 24
    • 0036645490 scopus 로고    scopus 로고
    • Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon
    • Møller, T., Franch, T., Udesen, C., Gerdes, K., and Valentin-Hansen, P. (2002) Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon. Genes Dev 16: 1696-1706.
    • (2002) Genes Dev , vol.16 , pp. 1696-1706
    • Møller, T.1    Franch, T.2    Udesen, C.3    Gerdes, K.4    Valentin-Hansen, P.5
  • 25
    • 0029113833 scopus 로고
    • Activation of alpha-toxin translation in Staphylococcus areus by the trans-encoded antisense RNA, RNAIII
    • Morfeldt, E., Taylor, D., von Gabain, A., and Arvidson, S. (1995) Activation of alpha-toxin translation in Staphylococcus areus by the trans-encoded antisense RNA, RNAIII. EMBO J 14: 4569-4577.
    • (1995) EMBO J , vol.14 , pp. 4569-4577
    • Morfeldt, E.1    Taylor, D.2    Von Gabain, A.3    Arvidson, S.4
  • 26
    • 4944264194 scopus 로고    scopus 로고
    • GadY, a small-RNA regulator of acid response genes in Escherichia coli
    • Opdyke, J.A., Kang, J.G., and Storz, G. (2004) GadY, a small-RNA regulator of acid response genes in Escherichia coli. J Bacteriol 186: 6698-6705.
    • (2004) J Bacteriol , vol.186 , pp. 6698-6705
    • Opdyke, J.A.1    Kang, J.G.2    Storz, G.3
  • 27
    • 3543116876 scopus 로고    scopus 로고
    • Unpublished Microbial Genomics. The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD20850. USA
    • Ravel, J., Rasko, D.A., Shumway, M.F., Jiang, L., Cer, R.Z., Federova, N.B., et al. (2004) Bacillus Anthracis Comparative Genomics. Unpublished Microbial Genomics. The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD20850. USA. See: http:// www.ncbi.nlm.nih.gov/entrez/query. fcgi?db=genomeprj& cmd=Retrieve&dopt=Overview&list_uids=10784
    • (2004) Bacillus Anthracis Comparative Genomics
    • Ravel, J.1    Rasko, D.A.2    Shumway, M.F.3    Jiang, L.4    Cer, R.Z.5    Federova, N.B.6
  • 28
    • 0035806973 scopus 로고    scopus 로고
    • Computational identification of noncoding RNAs in E. coli by comparative genomics
    • Rivas, E., Klein, T.R., Jones, T.A., and Eddy, S.R. (2001) Computational identification of noncoding RNAs in E. coli by comparative genomics. Curr Biol 11: 1369-1373.
    • (2001) Curr Biol , vol.11 , pp. 1369-1373
    • Rivas, E.1    Klein, T.R.2    Jones, T.A.3    Eddy, S.R.4
  • 30
    • 0017681196 scopus 로고
    • DNA sequencing with chain terminating inhibitors
    • Sanger, F., Nicklen, S., and Coulson, A.R. (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467.
    • (1977) Proc Natl Acad Sci USA , vol.74 , pp. 5463-5467
    • Sanger, F.1    Nicklen, S.2    Coulson, A.R.3
  • 31
    • 85047691317 scopus 로고    scopus 로고
    • CBS domains form energy-sensing modules whose binding of adenosine ligands is disrupted by disease mutations
    • Scott, J.W., Hawley, S.A., Green, K.A., Anis, M., Stewart, G., Scullion, G.A., et al. (2004) CBS domains form energy-sensing modules whose binding of adenosine ligands is disrupted by disease mutations. J Clin Invest 113: 274-284.
    • (2004) J Clin Invest , vol.113 , pp. 274-284
    • Scott, J.W.1    Hawley, S.A.2    Green, K.A.3    Anis, M.4    Stewart, G.5    Scullion, G.A.6
  • 32
    • 14844295003 scopus 로고    scopus 로고
    • CcpN (YqzB), a novel regulator for CcpA-independent catablite repression of Bacillus subtilis gluconeogenic genes
    • Servant, P., Le Coq, D., and Aymerich, S. (2005) CcpN (YqzB), a novel regulator for CcpA-independent catablite repression of Bacillus subtilis gluconeogenic genes. Mol Microbiol 55: 1435-1451.
    • (2005) Mol Microbiol , vol.55 , pp. 1435-1451
    • Servant, P.1    Le Coq, D.2    Aymerich, S.3
  • 33
    • 0033759266 scopus 로고    scopus 로고
    • Regulation of carbon catabolism in Bacillus species
    • Stülke, J., and Hillen, W. (2000) Regulation of carbon catabolism in Bacillus species. Annu Rev Microbiol 54: 849-880.
    • (2000) Annu Rev Microbiol , vol.54 , pp. 849-880
    • Stülke, J.1    Hillen, W.2
  • 34
    • 0030742667 scopus 로고    scopus 로고
    • Induction of the Bacillus subtilis ptsGHI operon by glucose is controlled by a novel antiterminator, GlcT. 2
    • Stülke, J., Martin-Verstraete, I., Zagorec, M., Rose, M., Klier, A., and Rapoport, G. (1997) Induction of the Bacillus subtilis ptsGHI operon by glucose is controlled by a novel antiterminator, GlcT. 2. Mol Microbiol 25: 65-78.
    • (1997) Mol Microbiol , vol.25 , pp. 65-78
    • Stülke, J.1    Martin-Verstraete, I.2    Zagorec, M.3    Rose, M.4    Klier, A.5    Rapoport, G.6
  • 35
    • 0036667443 scopus 로고    scopus 로고
    • Identification and characterization of novel small RNAs in the aspS-yrvM intergenic region of the Bacillus subtilis genome
    • Suzuma, S., Asari, S., Bunai, K., Yoshino, K., Ando, Y., Kakeshita, H., et al. (2002) Identification and characterization of novel small RNAs in the aspS-yrvM intergenic region of the Bacillus subtilis genome. Microbiol 148: 2591-2598.
    • (2002) Microbiol , vol.148 , pp. 2591-2598
    • Suzuma, S.1    Asari, S.2    Bunai, K.3    Yoshino, K.4    Ando, Y.5    Kakeshita, H.6
  • 36
    • 12744268746 scopus 로고    scopus 로고
    • Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus
    • Takami, H., Takaki, Y., Chee, G.J., Nishi, S., Shimamura, S., Suzuki, H., et al. (2004) Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus. Nucleic Acids Res 32: 6292-6303.
    • (2004) Nucleic Acids Res , vol.32 , pp. 6292-6303
    • Takami, H.1    Takaki, Y.2    Chee, G.J.3    Nishi, S.4    Shimamura, S.5    Suzuki, H.6
  • 37
    • 8544271637 scopus 로고    scopus 로고
    • Involvement of a novel transcriptional activator and small RNA in posttranscriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system
    • Vanderpool, C.K., and Gottesman, S. (2004) Involvement of a novel transcriptional activator and small RNA in posttranscriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system. Mol Microbiol 54: 1076-1089.
    • (2004) Mol Microbiol , vol.54 , pp. 1076-1089
    • Vanderpool, C.K.1    Gottesman, S.2
  • 38
    • 4644259296 scopus 로고    scopus 로고
    • The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential
    • Veith, B., Herzberg, C., Steckel, S., Feesche, J., Maurer, K.H., Ehrenreich, P., et al. (2004) The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential. J Mol Microbiol Biotechnol 7: 204-211.
    • (2004) J Mol Microbiol Biotechnol , vol.7 , pp. 204-211
    • Veith, B.1    Herzberg, C.2    Steckel, S.3    Feesche, J.4    Maurer, K.H.5    Ehrenreich, P.6
  • 39
    • 11144310172 scopus 로고    scopus 로고
    • The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide
    • Vogel, J., Argaman, L., Wagner, E.G.H., and Altuvia, S. (2004) The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide. Curr Biol 14: 2271-2276.
    • (2004) Curr Biol , vol.14 , pp. 2271-2276
    • Vogel, J.1    Argaman, L.2    Wagner, E.G.H.3    Altuvia, S.4
  • 40
    • 0036371843 scopus 로고    scopus 로고
    • Antisense RNAs in bacteria and their genetic elements
    • Dunlap, J.C., and Wu, C. (eds). London: Acad Press
    • Wagner, E.G.H., Altuvia, S., and Romby, P. (2002) Antisense RNAs in bacteria and their genetic elements. In Adv in Genetics. Dunlap, J.C., and Wu, C. (eds). London: Acad Press, pp. 361-398.
    • (2002) Adv in Genetics , pp. 361-398
    • Wagner, E.G.H.1    Altuvia, S.2    Romby, P.3
  • 41
    • 0034625237 scopus 로고    scopus 로고
    • 6S RNA regulates E. coli RNA polymerase activity
    • Wassarman, K.M., and Storz, G. (2000) 6S RNA regulates E. coli RNA polymerase activity. Cell 101: 613-623.
    • (2000) Cell , vol.101 , pp. 613-623
    • Wassarman, K.M.1    Storz, G.2
  • 42
    • 0035395606 scopus 로고    scopus 로고
    • Identification of novel small RNAs using comparative genomics and microarrays
    • Wassarman, K.M., Repoila, F., Rosenow, C., Storz, G., and Gottesman, S. (2001) Identification of novel small RNAs using comparative genomics and microarrays. Genes Dev 15: 1637-1651.
    • (2001) Genes Dev , vol.15 , pp. 1637-1651
    • Wassarman, K.M.1    Repoila, F.2    Rosenow, C.3    Storz, G.4    Gottesman, S.5
  • 43
    • 0033709634 scopus 로고    scopus 로고
    • Catabolite repression of dra-nupC-pdp operon expression in Bacillus subtilis
    • Zeng, X., Galinier, A., and Saxild, H.H. (2000) Catabolite repression of dra-nupC-pdp operon expression in Bacillus subtilis. Microbiol 146: 2901-2908.
    • (2000) Microbiol , vol.146 , pp. 2901-2908
    • Zeng, X.1    Galinier, A.2    Saxild, H.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.