-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
84873799110
-
Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli
-
Bertani, G. (1951) Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli. J Bacteriol 62: 293-300.
-
(1951)
J Bacteriol
, vol.62
, pp. 293-300
-
-
Bertani, G.1
-
3
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F.R., Plunkett, III, G., Bloch, C.A., Perna, N.T., Burland, V., Riley, M., et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277: 1453-1474.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett G. III2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
-
4
-
-
0028222812
-
Partitioning of plasmid R1. Ten direct repeats flanking the parA promoter constitute a centromere-like partition site parC, that expresses incompatibility
-
Dam, M., and Gerdes, K. (1994) Partitioning of plasmid R1. Ten direct repeats flanking the parA promoter constitute a centromere-like partition site parC, that expresses incompatibility. J Mol Biol 236: 1289-1298.
-
(1994)
J Mol Biol
, vol.236
, pp. 1289-1298
-
-
Dam, M.1
Gerdes, K.2
-
5
-
-
0022496283
-
Cloning and characterization of a lysine decarboxylase gene from Hafnia alvei
-
Fecker, L.F., Beier, H., and Berin, J. (1986) Cloning and characterization of a lysine decarboxylase gene from Hafnia alvei. Mol Gen Genet 203: 177-184.
-
(1986)
Mol Gen Genet
, vol.203
, pp. 177-184
-
-
Fecker, L.F.1
Beier, H.2
Berin, J.3
-
6
-
-
0029795086
-
Programmed cell death in bacteria: Translational repression by mRNA end-pairing
-
Franch, T., and Gerdes, K. (1996) Programmed cell death in bacteria: translational repression by mRNA end-pairing. Mol Microbiol 21: 1049-1060.
-
(1996)
Mol Microbiol
, vol.21
, pp. 1049-1060
-
-
Franch, T.1
Gerdes, K.2
-
7
-
-
0031576356
-
Programmed cell death by hok/sok of plasmid R1: Processing at the hok mRNA 3′-end triggers structural rearrangements that allow translation and antisense RNA binding
-
Franch, T., Gultyaev, A.P., and Gerdes, K. (1997) Programmed cell death by hok/sok of plasmid R1: processing at the hok mRNA 3′-end triggers structural rearrangements that allow translation and antisense RNA binding. J Mol Biol 273: 38-51.
-
(1997)
J Mol Biol
, vol.273
, pp. 38-51
-
-
Franch, T.1
Gultyaev, A.P.2
Gerdes, K.3
-
8
-
-
0021992145
-
Stable inheritance of plasmid R1 requires two different loci
-
Gerdes, K., Larsen, J.E.L., and Molin, S. (1985) Stable inheritance of plasmid R1 requires two different loci. J Bacteriol 161: 292-298.
-
(1985)
J Bacteriol
, vol.161
, pp. 292-298
-
-
Gerdes, K.1
Larsen, J.E.L.2
Molin, S.3
-
9
-
-
0345333119
-
Unique type of plasmid maintenance function: Postsegregational killing of plasmid-free cells
-
Gerdes, K., Rasmussen, P.B., and Molin, S. (1986a) Unique type of plasmid maintenance function: Postsegregational killing of plasmid-free cells. Proc Natl Acad Sci USA 83: 3116-3120.
-
(1986)
Proc Natl Acad Sci USA
, vol.83
, pp. 3116-3120
-
-
Gerdes, K.1
Rasmussen, P.B.2
Molin, S.3
-
10
-
-
0022764432
-
Mechanism of postsegregational killing by the hok gene product of the parB system of plasmid R1 and its homology with the relF gene product of the E. coli relB operon
-
Gerdes, K., Bech, F.W., Jørgensen, S.T., Løbner-Olesen, A., Rasmussen, P.B., Atlung, T., et al. (1986b) Mechanism of postsegregational killing by the hok gene product of the parB system of plasmid R1 and its homology with the relF gene product of the E. coli relB operon. EMBO J 5: 2023-2029.
-
(1986)
EMBO J
, vol.5
, pp. 2023-2029
-
-
Gerdes, K.1
Bech, F.W.2
Jørgensen, S.T.3
Løbner-Olesen, A.4
Rasmussen, P.B.5
Atlung, T.6
-
11
-
-
0025667824
-
The hok killer gene family in Gram-negative bacteria
-
Gerdes, K., Poulsen, L.K., Thisted, T., Nielsen, A.K., Martinussen, J., and Andreasen, P.H. (1990a) The hok killer gene family in Gram-negative bacteria. New Biologist 2: 946-956.
-
(1990)
New Biologist
, vol.2
, pp. 946-956
-
-
Gerdes, K.1
Poulsen, L.K.2
Thisted, T.3
Nielsen, A.K.4
Martinussen, J.5
Andreasen, P.H.6
-
12
-
-
0025173633
-
Mechanism of post-segregational killing by the hok/sok system of plasmid R1: Sok antisense RNA regulates formation of a hok mRNA species correlated with killing of plasmid-free cells
-
Gerdes, K., Thisted, T., and Martinussen, J. (1990b) Mechanism of post-segregational killing by the hok/sok system of plasmid R1: sok antisense RNA regulates formation of a hok mRNA species correlated with killing of plasmid-free cells. Mol Microbiol 4: 1807-1818.
-
(1990)
Mol Microbiol
, vol.4
, pp. 1807-1818
-
-
Gerdes, K.1
Thisted, T.2
Martinussen, J.3
-
13
-
-
0031455172
-
Antisense RNA-regulated programmed cell death
-
Gerdes, K., Gultyaev, A.P., Franch, T., Pedersen, K., and Mikkelsen, N.D. (1997) Antisense RNA-regulated programmed cell death. Annu Rev Genet 31: 1-31.
-
(1997)
Annu Rev Genet
, vol.31
, pp. 1-31
-
-
Gerdes, K.1
Gultyaev, A.P.2
Franch, T.3
Pedersen, K.4
Mikkelsen, N.D.5
-
14
-
-
0031816179
-
The Escherichia coli relBE genes belong to a new toxin-antitoxin gene family
-
Gotfredsen, M., and Gerdes, K. (1998) The Escherichia coli relBE genes belong to a new toxin-antitoxin gene family. Mol Microbiol 29: 1065-1076.
-
(1998)
Mol Microbiol
, vol.29
, pp. 1065-1076
-
-
Gotfredsen, M.1
Gerdes, K.2
-
15
-
-
0033614011
-
Toxin-antitoxin systems homologous to relBE of Escherichia coli plasmid P307 are ubiquitous in prokaryotes
-
Grønlund, H., and Gerdes, K. (1999) Toxin-antitoxin systems homologous to relBE of Escherichia coli plasmid P307 are ubiquitous in prokaryotes. J Mol Biol 285: 1401-1415.
-
(1999)
J Mol Biol
, vol.285
, pp. 1401-1415
-
-
Grønlund, H.1
Gerdes, K.2
-
16
-
-
0031576339
-
Programmed cell death by hok/sok of plasmid R1: Coupled nucleotide covariations reveal a phylogenetically conserved folding pathway in the hok family of mRNAs
-
Gultyaev, A.P., Franch, T., and Gerdes, K. (1997) Programmed cell death by hok/sok of plasmid R1: coupled nucleotide covariations reveal a phylogenetically conserved folding pathway in the hok family of mRNAs, J Mol Biol 273: 26-37.
-
(1997)
J Mol Biol
, vol.273
, pp. 26-37
-
-
Gultyaev, A.P.1
Franch, T.2
Gerdes, K.3
-
17
-
-
0030713350
-
Conditionally lethal genes associated with bacterial plasmids
-
Holcik, M., and Iyer, V.N. (1997) Conditionally lethal genes associated with bacterial plasmids. Microbiology 143: 3403-3416.
-
(1997)
Microbiology
, vol.143
, pp. 3403-3416
-
-
Holcik, M.1
Iyer, V.N.2
-
18
-
-
0027251266
-
The Escherichia coli K-12 'wild types' W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels
-
Jensen, K.F. (1993) The Escherichia coli K-12 'wild types' W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels. J Bacteriol 175: 3401-3407.
-
(1993)
J Bacteriol
, vol.175
, pp. 3401-3407
-
-
Jensen, K.F.1
-
19
-
-
0029083946
-
Programmed cell death in bacteria: Proteic plasmid stabilization systems
-
Jensen, R.B., and Gerdes, K. (1995) Programmed cell death in bacteria: proteic plasmid stabilization systems. Mol Microbiol 17: 205-210.
-
(1995)
Mol Microbiol
, vol.17
, pp. 205-210
-
-
Jensen, R.B.1
Gerdes, K.2
-
20
-
-
0029090349
-
Comparision of ccd of F, parDE of RP4 and parD of R1 using a novel conditional replication control system of plasmid R1
-
Jensen, R.B., Grohmann, E., Schwab, H., Diaz-Orejas, R., and Gerdes, K. (1995) Comparision of ccd of F, parDE of RP4 and parD of R1 using a novel conditional replication control system of plasmid R1. Mol Microbiol 17: 211-220.
-
(1995)
Mol Microbiol
, vol.17
, pp. 211-220
-
-
Jensen, R.B.1
Grohmann, E.2
Schwab, H.3
Diaz-Orejas, R.4
Gerdes, K.5
-
21
-
-
0031823984
-
Selfishness and death. Raison d'etre of restriction, recombination and mitochondria
-
Kobayashi, I. (1998) Selfishness and death. Raison d'etre of restriction, recombination and mitochondria. Trends Genet 14: 368-374.
-
(1998)
Trends Genet
, vol.14
, pp. 368-374
-
-
Kobayashi, I.1
-
22
-
-
0029044485
-
DNA restriction-modification systems mediate plasmid maintenance
-
Kulakauskas, S., Lubys, A., and Ehrlich, S.D. (1995) DNA restriction-modification systems mediate plasmid maintenance. J Bacteriol 177: 3451-3454.
-
(1995)
J Bacteriol
, vol.177
, pp. 3451-3454
-
-
Kulakauskas, S.1
Lubys, A.2
Ehrlich, S.D.3
-
23
-
-
0028803767
-
Restriction-modification systems as genomic parasites in competition for specific sequences
-
Kusano, K., Naito, T., Handa, N., and Kobayashi, I. (1995) Restriction-modification systems as genomic parasites in competition for specific sequences. Proc Natl Acad Sci USA 92: 11095-11099.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 11095-11099
-
-
Kusano, K.1
Naito, T.2
Handa, N.3
Kobayashi, I.4
-
24
-
-
0345077411
-
Promoters largely determine the efficiency of represser action
-
Lanzer, M., and Bujard, H. (1988) Promoters largely determine the efficiency of represser action. Proc Natl Acad Sci USA 85: 8973-8977.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 8973-8977
-
-
Lanzer, M.1
Bujard, H.2
-
25
-
-
0021253812
-
Low-copy-number plasmid-cloning vectors amplifiable by derepression of an inserted foreign promoter
-
Larsen, J.E.L., Gerdes, K., Light, J., and Molin, S. (1984) Low-copy-number plasmid-cloning vectors amplifiable by derepression of an inserted foreign promoter. Gene 28: 45-54.
-
(1984)
Gene
, vol.28
, pp. 45-54
-
-
Larsen, J.E.L.1
Gerdes, K.2
Light, J.3
Molin, S.4
-
26
-
-
0003785155
-
-
Cold Spring Harbor, NY: Cold Spring, Harbor Laboratory Press
-
Miller, J. (1972) Experiments in Molecular Genetics. Cold Spring Harbor, NY: Cold Spring, Harbor Laboratory Press.
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.1
-
27
-
-
0028901038
-
Selfish behavior of restriction-modification systems
-
Naito, T., Kusano, K., and Kobayashi, I. (1995) Selfish behavior of restriction-modification systems. Science 267: 897-899.
-
(1995)
Science
, vol.267
, pp. 897-899
-
-
Naito, T.1
Kusano, K.2
Kobayashi, I.3
-
28
-
-
0025800149
-
The rifampicin-inducible genes srnB from F and pnd from R483 are regulated by antisense RNAs and mediate plasmid maintenance by killing of plasmid-free segregants
-
Nielsen, A.K., Thorsted, P., Thisted, T., Wagner, E.G.H., and Gerdes, K. (1991) The rifampicin-inducible genes srnB from F and pnd from R483 are regulated by antisense RNAs and mediate plasmid maintenance by killing of plasmid-free segregants. Mol Microbiol 5: 1961-1973.
-
(1991)
Mol Microbiol
, vol.5
, pp. 1961-1973
-
-
Nielsen, A.K.1
Thorsted, P.2
Thisted, T.3
Wagner, E.G.H.4
Gerdes, K.5
-
29
-
-
0021367325
-
Standard reference strains of Escherichia coli from natural populations
-
Ochman, H., and Selander, R.K. (1984) Standard reference strains of Escherichia coli from natural populations. J Bacteriol 157: 690-693.
-
(1984)
J Bacteriol
, vol.157
, pp. 690-693
-
-
Ochman, H.1
Selander, R.K.2
-
31
-
-
0024311086
-
A family of genes encoding a cell-killing function may be conserved in all Gram-negative bacteria
-
Poulsen, L.K., Larsen, N.W., Molin, S., and Andersen, P. (1989) A family of genes encoding a cell-killing function may be conserved in all Gram-negative bacteria. Mol Microbiol 3: 1463-1472.
-
(1989)
Mol Microbiol
, vol.3
, pp. 1463-1472
-
-
Poulsen, L.K.1
Larsen, N.W.2
Molin, S.3
Andersen, P.4
-
32
-
-
0025879193
-
The gef gene from Escherichia coli is regulated at the level of translation
-
Poulsen, L.K., Refn, A., Molin, S., and Anderssin, P. (1991) The gef gene from Escherichia coli is regulated at the level of translation. Mol Microbiol 5: 1639-1648.
-
(1991)
Mol Microbiol
, vol.5
, pp. 1639-1648
-
-
Poulsen, L.K.1
Refn, A.2
Molin, S.3
Anderssin, P.4
-
33
-
-
0026544822
-
Analysis of an Escherichia coli mutant strain resistant to the cell-killing function encoded by the gef gene family
-
Poulsen, L.K., Larsen, N.W., Molin, S., and Anderssin, P. (1992) Analysis of an Escherichia coli mutant strain resistant to the cell-killing function encoded by the gef gene family. Mol Microbiol 6: 895-905.
-
(1992)
Mol Microbiol
, vol.6
, pp. 895-905
-
-
Poulsen, L.K.1
Larsen, N.W.2
Molin, S.3
Anderssin, P.4
-
34
-
-
0023189083
-
Multicopy expression vectors carrying the lac repressor gene for regulated high-level expression of genes in Escherichia coli
-
Stark, M.J.R. (1987) Multicopy expression vectors carrying the lac repressor gene for regulated high-level expression of genes in Escherichia coli Gene 51: 255-267.
-
(1987)
Gene
, vol.51
, pp. 255-267
-
-
Stark, M.J.R.1
-
35
-
-
0026571483
-
Mechanism of post-segregational killing by the hok/sok system of plasmid R1. Sok antisense RNA regulates hok gene expression indirectly through the overlapping mok gene
-
Thisted, T., and Gerdes, K. (1992) Mechanism of post-segregational killing by the hok/sok system of plasmid R1. Sok antisense RNA regulates hok gene expression indirectly through the overlapping mok gene. J Mol Biol 223: 41-54.
-
(1992)
J Mol Biol
, vol.223
, pp. 41-54
-
-
Thisted, T.1
Gerdes, K.2
-
36
-
-
0028209262
-
Mechanism of post-segregational killing: Sok antisense RNA interacts with Hok mRNA via its 5′-end single-stranded leader and competes with the 3′-end of Hok mRNA for binding to the mok translational initiation region
-
Thisted, T., Sørensen, N.S., Wagner, E.G.H., and Gerdes, K. (1994a) Mechanism of post-segregational killing: Sok antisense RNA interacts with Hok mRNA via its 5′-end single-stranded leader and competes with the 3′-end of Hok mRNA for binding to the mok translational initiation region. EMBO J 13: 1960-1968.
-
(1994)
EMBO J
, vol.13
, pp. 1960-1968
-
-
Thisted, T.1
Sørensen, N.S.2
Wagner, E.G.H.3
Gerdes, K.4
-
37
-
-
0028346279
-
Mechanism of post-segregational killing: Translation of Hok SrnB and Pnd mRNA of plasmids R1, F and R483 is activated by 3′-end processing
-
Thisted, T., Nielsen, A.K., and Gerdes, K. (1994b) Mechanism of post-segregational killing: translation of Hok SrnB and Pnd mRNA of plasmids R1, F and R483 is activated by 3′-end processing. EMBO J 13: 1950-1959.
-
(1994)
EMBO J
, vol.13
, pp. 1950-1959
-
-
Thisted, T.1
Nielsen, A.K.2
Gerdes, K.3
-
38
-
-
0028943680
-
Mechanism of post-segregational killing: Secondary structure analysis of the entire Hok mRNA from plasmid R1 suggest a fold-back structure that prevents translation and antisense RNA binding
-
Thisted, T., Sørensen, N.S., and Gerdes, K. (1995) Mechanism of post-segregational killing: secondary structure analysis of the entire Hok mRNA from plasmid R1 suggest a fold-back structure that prevents translation and antisense RNA binding. J Mol Biol 247: 859-873.
-
(1995)
J Mol Biol
, vol.247
, pp. 859-873
-
-
Thisted, T.1
Sørensen, N.S.2
Gerdes, K.3
-
39
-
-
0028963606
-
Programmed cell death in bacterial populations
-
Yarmolinsky, M.B. (1995) Programmed cell death in bacterial populations. Science 267: 836-837.
-
(1995)
Science
, vol.267
, pp. 836-837
-
-
Yarmolinsky, M.B.1
-
40
-
-
0015871909
-
In vitro synthesis of protein in microbial systems
-
Zubay, G. (1973) In vitro synthesis of protein in microbial systems. Annu Rev Genet 7: 267-287.
-
(1973)
Annu Rev Genet
, vol.7
, pp. 267-287
-
-
Zubay, G.1
|