Molecular modeling and biophysical analysis of the c-MYC NHE-III1 silencer element

Journal of Molecular Modeling

Volumn 14, Issue 2, 2008, Pages 93-101

  Cashman, Derek J ^a   Buscaglia, Robert ^a   Freyer, Matthew W ^a   Dettler, Jamie ^a   Hurley, Laurence H ^b,c,d   Lewis, Edwin A ^a  

^a NORTHERN ARIZONA UNIVERSITY   (United States)

^b UNIVERSITY OF ARIZONA   (United States)

^c UNIVERSITY OF ARIZONA   (United States)

^d University of Arizona   (United States)

Author keywords

c MYC; G quadruplex; i Motif; NHE III1; Oncogenes; Silencer element; TMPyP4

Indexed keywords

CYTOSINE; MESO META(N METHYL 3 PYRIDYL)PORPHINE; MESO ORTHO(N METHYL 2 PYRIDYL)PORPHINE; MESO TETRA(N METHYL 4 PYRIDYL)PORPHINE; MYC PROTEIN; PORPHYRIN; PORPHYRIN DERIVATIVE; PURINE; PYRIMIDINE; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; BIOPHYSICS; DNA SEQUENCE; MOLECULAR MODEL; NUCLEAR MAGNETIC RESONANCE; NUCLEOTIDE SEQUENCE; ONCOGENE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DNA INTERACTION; PROTEIN INTERACTION; PROTEIN MOTIF; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; SILENCER ELEMENT; STRUCTURE ANALYSIS;

TETRA;

EID: 38349051114     PISSN: 16102940     EISSN: 09485023     Source Type: Journal    
DOI: 10.1007/s00894-007-0254-z     Document Type: Article

References (36)

1. Hurley LH (2002) Nature 2:188-200
2. Slapak CA, Kufe DW (1998) Principles of cancer therapy. In: Isselbacher KJ et al (eds) Harrison's principles of internal medicine, 14th edn. McGraw-Hill, New York, pp 523-537
3. Freyer MW, Buscaglia R, Kaplan K, Cashman D, Hurley LH, Lewis EA (2006) Biophys J 92(6):2007-2015
4. Han H, Hurley LH (2000) Trends in Pharmaceutical Sciences 21(4):136-142
5. Hurley LH (2001) Biochem Soc Trans 29:692-696
6. Hurley LH, Wheelhouse RT, Sun D, Kerwin SM, Salazar M, Fedoroff OY, Han FX, Izbicka E, von Hoff DD (2000) Pharmacological Therapeutics 85:141-158
7. Mergny JL, Helene C (1998) Nat Med 4:1366-1367
8. Mills M, Lacroix L, Arimondo PB, Leroy JL, Francois JC, Klump H, Mergny JL (2002) Curr Med Chem Anticancer Agents 2:627-644
9. Mergny JL, Riou JF, Mailliet P, Teulade-Fichou MP, Gilson E (2002) Nucleic Acids Res 30:839-865
10. Todd AK, Johnston M, Neidle S (2005) Nucleic Acids Res 33(9):2901-2907
11. Gartel AL, Shchors K (2003) Exp Cell Res 283:17-21
12. Pelengaris S, Khan M (2003) Arch Biochem Biophys 416:129-136
13. Marcu KB, Bossone SA, Patel AJ (1992) Ann Rev Biochem 61:809-858
14. Pelengaris S, Rudolph B, Littlewood T (2000) Curr Opin in Genetic Devel 10:100-105
15. Slamon DJ, deKernion JB, Verma IM, Cline MJ (1984) Science 224:256-262
16. Cooney M, Czernuszewicz G, Postel EH, Flint SJ, Hogan ME (1988) Science 241:456-459
17. Michelotti EF, Tomonaga T, Krutzsch H, Levens D (1995) J Biol Chem 270:9494-9499
18. Postel EH, Berberich SJ, Rooney JW, Kaetzel DM (2000) J Bioenerg Biomembranes 32:277-284
19. Simonnson T, Pecinka P, Kubista M (1998) Nucleic Acids Res 26:1167-1172
20. Simonnson T, Pribylova M, Vorlickova M (2000) Biochem Biophys Res Comm 278:158-166
21. Tomonaga T, Levens D (1996) Proc Natl Acad Sci USA 93(12):5830-5835
22. Collins I, Weber A, Levens D (2001) Mol Cell Biol 21(24):8437-8451
23. Ambrus A, Chen D, Dai J, Jones RA, Yang D (2005) Biochemistry 44:2048-2058
24. Siddiqui-Jain A, Grand CL, Bearss DJ, Hurley LH (2002) Proc Natl Acad Sci USA 99:11593-11598
25. Mathur V, Verma A, Maiti S, Chowdhury S (2004) Biochem Biophys Res Comm 320:1220-1227
26. Halder K, Mathur V, Chugh D, Verma A, Chowdhury S (2005) Biochem Biophys Res Comm 327:49-56
27. Li W, Miyoshi D, Nakano S, Sugimoto N (2003) Biochemistry 42:11736-11744
28. Risitano A, Fox KR (2003) Biochemistry 42:6507-6513
29. Grand CL, Han H, Munox RM, Weitman S, von Hoff DD, Hurley LH, Bearss DJ (2002) Mol Cancer Ther 1:565-573
30. Han FX, Wheelhouse RT, Hurley LH (1999) JACS 121:3561-3570
31. Read MA, Neidle S (2000) Biochemistry 39:13422-13432
32. Wheelhouse RT, Sun D, Han H, Han FX, Hurley LH (1992) J Am Chem Soc 120:3261-3262
33. Esmaili N, Leroy J-L (2005) Nucleic Acids Res 33:213-224
34. Hurley LH, Von Hoff DD, Siddiqui-Jain A, Yang D (2006) Semin Oncol 33:498-512
35. Koo MS, Ozawa T, Santos RA, Lamborn KR, Bollen AW, Deen DF, Kahl SB (2007) J Med Chem 50:820-827
36. Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (2001) Adv Drug Deliv Rev 46:3-26