Metabolic discrimination of sucrose starvation from Arabidopsis cell suspension by 1H NMR based metabolomics

Biotechnology and Bioprocess Engineering

Volumn 12, Issue 6, 2007, Pages 653-661

  Kim, Suk Weon ^a   Koo, Bon Cho ^a   Kim, Jonghyun ^a   Liu, Jang Ryol ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

1H NMR spectroscopy; Arabidopsis thaliana cell suspension; Principal component analysis; Principal component regression; Sucrose starvation

Indexed keywords

ALANINE; AMINO ACID; ASPARAGINE; CELL EXTRACT; FRUCTOSE; GLUCOSE; GLUTAMIC ACID; MALIC ACID; PHENYLALANINE; SUCROSE;

AMINO ACID ANALYSIS; ARABIDOPSIS; ARTICLE; CELL METABOLISM; CELL SUSPENSION; CONTROLLED STUDY; FRACTIONATION; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; METABOLOMICS; NONHUMAN; PLANT CELL CULTURE; PLANT METABOLISM; PRINCIPAL COMPONENT ANALYSIS; PROTON NUCLEAR MAGNETIC RESONANCE; STARVATION; WHOLE CELL;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 38349047611     PISSN: 12268372     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02931082     Document Type: Article

References (19)

1. Thomas, H. (1978) Enzymes of nitrogen mobilization in detached leaves of Folium temulentum during senescence. Planta 142: 161-169.
2. Hanaoka, H., T. Noda, Y. Shirano, T. Kato, H. Hayashi, D. Shibata, S. Tabata, and Y. Ohsumi (2002) Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. Plant Physiol. 129:1181-1193.
3. Moriyasu, Y. and Y. Ohsumi (1996) Autophagy in tobacco suspension-cultured cells in response to sucrose starvation. Plant Physiol. 111: 1233-1241.
4. Yu, S. M. (1999) Cellular and genetic responses of plants to sugar starvation. Plant Physiol. 121: 687-693.
5. Brouquisse, R., F. James, A. Pradet, and P. Raymond (1992) Asparagine metabolism and nitrogen distribution during protein degradation in sugar-starved maize root tips. Planta 188: 384-395.
6. Journet, E. P., R. Bligny, and R. Douce (1986) Biochemical changes during sucrose deprivation in higher plant cells. J. Biol. Chem. 261: 3193-3199.
7. Dunn, W. B., N. J. C. Bailey, and H. E. Johnson (2005) Measuring the metabolome: current analytical technologies. Analyst 130: 606-625.
8. Nicholson, J. K., J. Connelly, J. C. Lindon, and E. Holmes (2002) Metabonomics: a platform for studying drug toxicity and gene function. Nat. Rev. Drug Discov. 1: 153-161.
9. Gavaghan, C. L., E. Holmes, E. Lenz, I. D. Wilson, and J. K. Nicholson (2000) An NMR-based metabonomic approach to investigate the biochemical consequences of genetic strain differences: application to the C57BL10J and Alpk:ApfCD mouse. FEBS Lett. 484: 169-174.
10. Raamsdonk, L. M., B. Teusink, D. Broadhurst, N. Zhang, A. Hayes, M. C. Walsh, J. A. Berden, K. M. Brindle, D. B. Kell, J. J. Rowland, H. V. Westerhoff, K. van Dam, and S. G. Oliver (2001) A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations. Nat. Biotechnol. 19: 45-50.
11. 1H NMR spectroscopy and multivariate analysis as a technique for metabolite fingerprinting of Arabidopsis thaliana. Phytochemistry 62: 949-957.
12. Hwang, S. J. (2006) Baicalin production in transformed hairy root clones of Scutellaria baicalensis. Biotechnol. Bioprocess Eng. 11: 105-109.
13. Ahn, J. C., W. S. Chong, Y. S. Kim, and B. Hwang (2006) Optimization of the sucrose and ion concentrations for saikosaponin production in hairy root culture of Bupleurum falcatum. Biotechnol. Bioprocess Eng. 11: 121-126.
14. 4+-stimulated ion fluxes are responsible for apoptosis and taxol biosynthesis in suspension cultures of Taxus cells. Biotechnol. Bioprocess Eng. 10:109-114.
15. Wang, W., Z. J. Zhao, Y. Xu, X. Qian, and J. J. Zhong (2005) Efficient elicitation of ginsenoside biosynthesis in cell cultures of Panax notoginseng by using self-chemically-synthesized jasmonates. Biotechnol. Bioprocess Eng. 10: 162-165.
16. Jo, S. H., S. Y. Kwon, D. S. Park, K. S. Yang, J. W. Kim, K. T. Lee, S. S. Kwak, and H. S. Lee (2006) High-yield production of functional human lactoferrin in transgenic cell cultures of Siberian ginseng (Acanthopanax senticosus). Biotechnol. Bioprocess Eng. 11: 442-448.
17. Murashige, T. and F. Skoog (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plant. 15: 473-497.
18. Wong, J. W. H., G. Cagney, and H. M. Cartwright (2005) SpecAlign - processing and alignment of mass spectra datasets. Bioinformatics 21: 2088-2090.
19. Wold, H. (1966) Estimation of principal components and related models by iterative least squares, pp. 391-420. In: K. R. Krishnaiah (ed.). Multivariate Analysis. Academic Press, New York, NY, USA.