Dietary modulation and structure prediction of rat mucosal pentraxin (Mptx) protein and loss of function in humans

Genes and Nutrition

Volumn 2, Issue 3, 2007, Pages 275-285

  van der Meer van Kraaij, Cindy ^a,b,c   Siezen, Roland ^a,c,d   Kramer, Evelien ^a,b   Reinders, Marjolein ^a,b   Blokzijl, Hans ^e   van der Meer, Roelof ^a,c   Keijer, Jaap ^a,b  

^a TOP INSTITUTE FOOD AND NUTRITION   (Netherlands)

^b WAGENINGEN UNIVERSITY   (Netherlands)

^c NIZO FOOD RESEARCH   (Netherlands)

^d RADBOUD UNIVERSITY MEDICAL CENTER   (Netherlands)

^e UNIVERSITY OF GRONINGEN   (Netherlands)

Author keywords

Absence in human; Biomarker; Calcium; Carcinogenesis; Heme; Nutrition; Protein modelling

Indexed keywords

BIOLOGICAL MARKER; CALCIUM; HEME; MESSENGER RNA; MUCOSAL PENTRAXIN; PENTRAXIN; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BINDING SITE; CALCIUM BINDING; COLON MUCOSA; CONTROLLED STUDY; DIETARY INTAKE; DOWN REGULATION; EXON; GENE DELETION; GENE EXPRESSION REGULATION; HUMAN; HUMAN VERSUS ANIMAL COMPARISON; MALE; MOLECULAR INTERACTION; MOLECULAR MODEL; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PREDICTION; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN STRUCTURE; RAT; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STOP CODON; STRUCTURE ANALYSIS;

RATTUS; RODENTIA;

EID: 38349026795     PISSN: 15558932     EISSN: 18653499     Source Type: Journal    
DOI: 10.1007/s12263-007-0058-x     Document Type: Article

References (45)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Bickerstaff MCM, Botto M, Hutchinson WL, Herbert J, Tennent GA, Bybee A, Mitchell DA, Cook HT, Butler PJG, Walport MJ, Pepys MB (1999) Serum amyloid P component controls chromatin degradation and prevents antinuclear autoimmunity. Nature Med 5:694-697
3. Biro A, Rovo Z, Papp, D, Cervenak L, Varga L, Fust G, Thielens NM, Arlaud GJ, Prohaszka Z (2007) Studies on the interactions between C-reactive protein and complement proteins. Immunology, doi:10.1111/ j.1365-2567.2007.02535
4. Boon EMJ, Pouwels W, Redeker S, Joosten SPJ, Hamann J, Vander Neut R, Pals ST (2006) Activation of Wnt signaling in the intestinal mucosa of Apc (+/min) mice does not cause overexpression of the receptor tyrosine kinase Met. Cancer Sci 97:710-715
5. Bourque G, Pevzner PA, Tesler G (2004) Reconstructing the genomic architecture of ancestral mammals: lessons from human, mouse, and rat genomes. Genome Res 14:507-516
6. Chatterjee IB (1973) Evolution and the biosynthesis of ascorbic acid. Science 182:1271-1272
7. De Sesso JM, Jacobson CF (2001) Anatomical and physiological parameters affecting gastrointestinal absorbtion in humans and rats. Food Chem Toxicol 39:209-228
8. Drew JE, Farquharson AJ, Keijer J, Barrera LN (2006) Complex regulation of mucosal pentraxin (Mptx) revealed by discrete micro-anatomical locations in colon. Biochim Biophys Acta 1762:844-848
9. Du Clos TW (1996) The interaction of C-reactive protein and serum amyloid P component with nuclear antigens. Mol Biol Rep 23:253-260
10. Familian A, Zwart B, Huisman HG, Rensink I, Roem D, Hordijk PL, Aarden LA, Hack CE (2001) Chromatin-independent binding of serum amyloid P component to apoptotic cells. J Immunol 167:647
11. Hutchinson WL, Noble GE, Hawkins PN, Pepys MB (1994) The pentraxins, C-reactive protein and serum amyloid P component, are cleared and catabolized by hepatocytes in vivo. J Clin Invest 94:1390-1396
12. Galili U, Swanson K (1991) Gene sequences suggest inactivation of alpha-1,3-galactosyltransferase in catarrhines after the divergence of apes from monkeys. Proc Natl Acad Sci USA 88:7401-7404
13. Gewurz H, Zhang XH, Lint TF (1995) Structure and function of the pentraxins. Curr Opin Immunol 7:54-64
14. Gladyshev VN, Kryukov GV, Fomenko DE, Hatfield DL (2004) Identification of trace element - containing proteins in genomic databases. Annu Rev Nutr 24:579-596
15. Goodman AR, Cardozo T, Abagyan R, Altmeyer A, Wisniewski HG, Vilcek J (1996) Long pentraxins: an emerging group of proteins with diverse functions. Cytokine Growth Factor Rev 7:191-202
16. Haag F, Koch-Nolte F, Kuhl M, Lorenzen S, Thiele HG (1994) Premature stop codons inactivate the RT6 genes of the human and chimpanzee species. J Mol Biol 243:537-546
17. Kravitz MS, Pitashny M, Shoenfeld Y (2005) Protective molecules - C-reactive protein (CRP), serum amyloid P (SAP), pentraxin3 (PTX3), mannose-binding lectin (MBL), and apolipoprotein A1 (Apo A1), and their autoantibodies: prevalence and clinical significance in autoimmunity. J Clin Lab Immunol 25:582-591
18. Larsen RD, Rivera-Marrero CA, Ernst LK, Cummings RD, Lowe JB (1990) Frameshift and nonsense mtations in a human genomic sequence homologous to a murine UDP-Gal:ß-D-Gal(1,4)-D-GlcNAc α(1,3)-galactosyltransferase cDNA. J Biol Chem 256:7055-7061
19. Lee RT, Takagabara I, Lee YC (2002) Mapping the binding areas of human C-reactive protein for phosphorylcholine and polycationic compounds - relationship between the two types of binding sites. J Biol Chem 277:225-232
20. Nauta AJ, Daha MR, van Kooten C, Roos A (2003) Recognition and clearance of apoptotic cells: a role for complement and pentraxins. Trends Immunol 24:148-154
21. Nejdfors P, Ekelund M, Jeppsson B, Westrom BR (2000) Mucosal in vitro permeability in the intestinal tract of the pig, the rat, and man: species- and region-related differences. Scand J Gastroenterol 35:501-507
22. Nishikimi M, Udenfriend S (1976) Immunologic evidence that the gene for L-gulono-gamma-lactone oxidase is not expressed in animals subject to scurvy. Proc Natl Acad Sci USA 73:2066-2068
23. Nishikimi M, Fukuyama R, Minoshima S, Shimizu N, Yagi K (1994) Cloning and chromosomal mapping of the human non-functional gene for L-gulono-gamma-lactone oxidase, the enzyme for L-ascorbic acid biosynthesis missing in man. J Biol Chem 269:13685-13688
24. Peavy TR, Hernandez C, Carroll EJ Jr (2003) Jeltraxin, a frog egg jelly glycoprotein, has calcium-dependent lectin properties and is related to human serum pentraxins CRP and SAP. Biochemistry 42:12761-12769
25. Pepys MB, Hirschfield GM (2003) C-reactive protein: a critical update. J Clin Invest 111:1805-1812
26. Pepys MB, Lanham JG, Beer FC (1982) C-reactive protein in SLE. Clin Rheum Dis 8:91-103
27. Pradet-Balade B, Boulme F, Beug H, Mullner EW, Garcia-Sanz JA (2001) Translation control: bridging the gap between genomics and proteomics? Trends Biochem Sci 26:225-229
28. Ramis JM, Franssen- van Hal NLW, Kramer EHM, Llado I, Bouillaud F, Palou A, Keijer J (2002) Carboxypeptidase E and thrombospondin-1 are differently expressed in subcutaneous and visceral fat of obese subjects. Cell Mol Life Sci 59:1960-1971
29. Rodriguez W, Mold C, Marnell LL, Hutt J, Silverman GJ, Tran D, Du Clos TW (2006) Prevention and reversal of nephritis in MRL/lpr mice with a single injection of C-reactive protein. Arthritis Rheum 54:325-335
30. Russell AI, Graham DSC, Shepherd C, Roberton CA, Whittaker J, Meeks J, Powell RJ, Isenberg DA, Walport MJ, Vyse TJ (2004) Polymorphism at the C-reactive protein locus influences gene expression and predisposes to systemic lupus erythematosus. Human Mol Genet 13:137-147
31. Sesink AL, Termont DSML, Kleibeuker JH, Van der Meer R (1999) Red meat and colon cancer: the cytotoxic effect and hyperproliferative effects of dietary heme. Cancer Res 59:5704-5709
32. Sesink AL, Termont DS, Kleibeuker JH, Van Der Meer R (2000) Red meat and colon cancer: dietary haem, but not fat, has cytotoxic and hyperproliferative effects on rat colonic epithelium. Carcinogenesis 21:1909-1915
33. Sesink AL, Temont DS, Kleibeuker JH, Van der Meer R (2001) Red meat and colon cancer: dietary haem-induced colonic cytotoxicity and epithelial hyperproliferation are inhibited by calcium. Carcinogenesis 22:1653-1659
34. Sjoberg AP, Trouw LA, McGrath FD, Hack CE, Blom AM (2006) Regulation of complement activation by C-reactive protein: targeting of the inhibitory activity of C4b-binding protein. J Immunol 176:7612-7620
35. Tharia HA, Shrive AK, Mills JD, Arme C, Williams GT, Greenhough TJ (2002) Complete cDNA sequence of SAP-like pentraxin from Limulus polyphemus: implications for pentraxin evolution. J Mol Biol 316:583-597
36. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 11:4673-4680
37. Van Der Meer-Van Kraaij C, Van Lieshout EM, Kramer E, Van Der Meer R, Keijer J (2003) Mucosal pentraxin (Mptx), a novel rat gene 10-fold down-regulated in colon by dietary heme. FASEB J 17:1277-1285
38. Van Der Meer-Van Kraaij C, Kramer E, Jonker-Termont D, Katan MB, Van der Meer R, Keijer J (2005) Differential gene expression in rat colon by dietary heme and calcium. Carcinogenesis 26:73-79
39. Van Lieshout EMM, Van Doesburg W, Van der Meer R (2004) Real-time PCR of host DNA in feces to study differential exfoliation of colonocytes between rats and humans. Scand J Gastroenterol 39:852-857
40. Verma S, Kuliszewski MA, Li SH, Szmitko PE, Zucco L, Wang CH, Badiwala MV, Mickle DAG, Weisel RD, Fedak PWM, Stewart DJ, Kutryk MJB (2004) C-reactive protein attenuates endothelial progenitor cell survival, differentiation, and function - further evidence of a mechanistic link between C-reactive protein and cardiovascular disease. Circulation 109:2058-2067
41. Vriend G (1990) WHAT IF: a molecular modeling and drug design program. J Mol Graphics 8:52-56
42. Walker SA, Whitten LB, Seals GB, Lee WE, Archibong AE, Ramesh A (2006) Inter-species comparison of liver and small intestinal microsomal metabolism of fluoranthene. Food Chem Toxicol 44:380-387
43. Wang HW, Sui S (1999) Pentameric two-dimensional crystallization of rabbit C-reactive protein on lipid monolayers. J Struct Biol 127:283-286
44. Wang P, Keijer J, Bunschoten A, Bouwman F, Renes J, Mariman E (2006) Insulin modulates the secretion of proteins from mature 3T3-L1 adipocytes: a role for transcriptional regulation of processing. Diabetologia 49:2453-2462
45. Zhao YH, Abraham MH, Le J, Hersey A, Luscombe CN, Beck G, Sherborne B, Cooper I (2003) Evaluation of rat intestinal absorption data and correlation with human intestinal absorption. Eur J Med Chem 38:233-243