-
1
-
-
0036845322
-
Models-of-data and models-of processes in the post-genomic era. Special Issue in honor of John A
-
Voit EO. Models-of-data and models-of processes in the post-genomic era. Special Issue in honor of John A. Jacquez. Math Biosci 2002;180:263-274.
-
(2002)
Jacquez. Math Biosci
, vol.180
, pp. 263-274
-
-
Voit, E.O.1
-
3
-
-
65649109562
-
Understanding Through Modeling
-
in Konopka AK, Editor, in press
-
Voit EO, Schwacke JH. Understanding through Modeling, in Konopka AK, Editor. Systems Biology: Principles, Methods, and Concepts, in press, 2006.
-
(2006)
Systems Biology: Principles, Methods, and Concepts
-
-
Voit, E.O.1
Schwacke, J.H.2
-
4
-
-
1642462948
-
Computational physiology and the Physiome Project
-
Crampin EJ, Halstead M, Hunter P, Nielsen P, Noble D, Smith N, et al. Computational physiology and the Physiome Project. Exp Physiol 2004;89:1-26.
-
(2004)
Exp Physiol
, vol.89
, pp. 1-26
-
-
Crampin, E.J.1
Halstead, M.2
Hunter, P.3
Nielsen, P.4
Noble, D.5
Smith, N.6
-
5
-
-
5044227742
-
The evolution of molecular biology into systems biology
-
Westerhoff HV, Palsson BO. The evolution of molecular biology into systems biology. Nat Biotechnol 2004;22:1249-52.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1249-1252
-
-
Westerhoff, H.V.1
Palsson, B.O.2
-
6
-
-
0025761173
-
The challenge of reconstruction
-
Savageau MA. The challenge of reconstruction. The New Biologist 1991; 3:101-102.
-
(1991)
The New Biologist
, vol.3
, pp. 101-102
-
-
Savageau, M.A.1
-
7
-
-
0001298102
-
Der Organismus als physikalisches System betrachtet
-
von Bertalanffy L. Der Organismus als physikalisches System betrachtet. Die Naturwissenschaften 1940; 33:521-531.
-
(1940)
Die Naturwissenschaften
, vol.33
, pp. 521-531
-
-
von Bertalanffy, L.1
-
8
-
-
0014649230
-
Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions
-
Savageau MA. Biochemical systems analysis. I. Some mathematical properties of the rate law for the component enzymatic reactions. J Theor Biol 1969;25:365-369.
-
(1969)
J Theor Biol
, vol.25
, pp. 365-369
-
-
Savageau, M.A.1
-
9
-
-
0014658880
-
Biochemical systems analysis. II. The steady-state solutions for an n-pool system using a power-law approximation
-
Savageau MA. Biochemical systems analysis. II. The steady-state solutions for an n-pool system using a power-law approximation. J Theor Biol 1969;25:370-379.
-
(1969)
J Theor Biol
, vol.25
, pp. 370-379
-
-
Savageau, M.A.1
-
14
-
-
0342349799
-
Recasting nonlinear differential equations as S-systems: A canonical nonlinear form
-
Savageau MA, Voit EO. Recasting nonlinear differential equations as S-systems: A canonical nonlinear form. Math Biosci 1987;87:83-115.
-
(1987)
Math Biosci
, vol.87
, pp. 83-115
-
-
Savageau, M.A.1
Voit, E.O.2
-
15
-
-
0026495410
-
The tricarboxylic acid cycle in Dictyostelium discoideum. I. Formulation of alternative kinetic representations
-
Shiraishi F, Savageau MA. The tricarboxylic acid cycle in Dictyostelium discoideum. I. Formulation of alternative kinetic representations. J Biol Chem 1992;267:22912-22918.
-
(1992)
J Biol Chem
, vol.267
, pp. 22912-22918
-
-
Shiraishi, F.1
Savageau, M.A.2
-
16
-
-
0031832789
-
Mathematical models of purine metabolism in man
-
Curto R, Voit EO, Sorribas A, Cascante M, Mathematical models of purine metabolism in man. Math Biosci 1998;151:1-49.
-
(1998)
Math Biosci
, vol.151
, pp. 1-49
-
-
Curto, R.1
Voit, E.O.2
Sorribas, A.3
Cascante, M.4
-
17
-
-
0030805740
-
Validation and steady-state analysis of a power-law model of purine metabolism in man
-
Curto R, Voit EO, Sorribas A, Cascante M. Validation and steady-state analysis of a power-law model of purine metabolism in man. Biochem J 1997;324:761-775.
-
(1997)
Biochem J
, vol.324
, pp. 761-775
-
-
Curto, R.1
Voit, E.O.2
Sorribas, A.3
Cascante, M.4
-
18
-
-
0032007555
-
Analysis of abnormalities in purine metabolism leading to gout and to neurological dysfunctions in man
-
Curto R, Voit EO, Cascante M. Analysis of abnormalities in purine metabolism leading to gout and to neurological dysfunctions in man. Biochem J 1998;329:477-487.
-
(1998)
Biochem J
, vol.329
, pp. 477-487
-
-
Curto, R.1
Voit, E.O.2
Cascante, M.3
-
19
-
-
0028765255
-
Modelling approach to control of carbohydrate metabolism during citric acid accumulation by Aspergillus niger. I. Model definition and stability analysis
-
Torres NV. Modelling approach to control of carbohydrate metabolism during citric acid accumulation by Aspergillus niger. I. Model definition and stability analysis. Biotechnol Bioeng 1994;44:104-111.
-
(1994)
Biotechnol Bioeng
, vol.44
, pp. 104-111
-
-
Torres, N.V.1
-
20
-
-
0030569904
-
Optimization of nonlinear biotechnological processes with linear programming. Application to citric acid production in Aspergillus niger
-
Torres NV, Voit EO, Alcón CH. Optimization of nonlinear biotechnological processes with linear programming. Application to citric acid production in Aspergillus niger. Biotechnol Bioeng 1996;49:247-258.
-
(1996)
Biotechnol Bioeng
, vol.49
, pp. 247-258
-
-
Torres, N.V.1
Voit, E.O.2
Alcón, C.H.3
-
21
-
-
0345256534
-
A quantitative model of the generation of N(epsilon)-(carboxymethyl)lysine in the Maillard reaction between collagen and glucose
-
Ferreira AE, Ponces Freire AM, Voit EO. A quantitative model of the generation of N(epsilon)-(carboxymethyl)lysine in the Maillard reaction between collagen and glucose. Biochem J 2003;376:109-21.
-
(2003)
Biochem J
, vol.376
, pp. 109-121
-
-
Ferreira, A.E.1
Ponces, F.A.M.2
Voit, E.O.3
-
22
-
-
0038699639
-
Biochemical and genomic regulation of the trehalose cycle in yeast: Review of observations and canonical model analysis
-
Voit EO. Biochemical and genomic regulation of the trehalose cycle in yeast: Review of observations and canonical model analysis. J Theor Biol 2003;223:55-78.
-
(2003)
J Theor Biol
, vol.223
, pp. 55-78
-
-
Voit, E.O.1
-
23
-
-
13444283465
-
Simulation and validation of modelled sphingolipid metabolism in Saccharomyces cerevisiae
-
Alvarez-Vasquez F, Sims KJ, Cowart LA, Okamoto Y, Voit EO, Hannun YA. Simulation and validation of modelled sphingolipid metabolism in Saccharomyces cerevisiae. Nature 2005;433:425-30.
-
(2005)
Nature
, vol.433
, pp. 425-430
-
-
Alvarez-Vasquez, F.1
Sims, K.J.2
Cowart, L.A.3
Okamoto, Y.4
Voit, E.O.5
Hannun, Y.A.6
-
24
-
-
0344099105
-
Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models
-
Alvarez-Vasquez F, Sims KJ, Hannun YA, Voit EO. Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models. J Theor Biol 2004;226:265-91.
-
(2004)
J Theor Biol
, vol.226
, pp. 265-291
-
-
Alvarez-Vasquez, F.1
Sims, K.J.2
Hannun, Y.A.3
Voit, E.O.4
-
25
-
-
3042728023
-
Predictive reconstruction of the mitochondrial iron-sulfur cluster assembly metabolism: I. The role of the protein pair ferredoxin-ferredoxin reductase (Yah1-Arh1)
-
Alves R, Herrero E, Sorribas A. Predictive reconstruction of the mitochondrial iron-sulfur cluster assembly metabolism: I. The role of the protein pair ferredoxin-ferredoxin reductase (Yah1-Arh1). Proteins 2004;56:354-66.
-
(2004)
Proteins
, vol.56
, pp. 354-366
-
-
Alves, R.1
Herrero, E.2
Sorribas, A.3
-
27
-
-
33746615693
-
Regulation of glycolysis in Lactococcus lactis: An unfinished systems biological case study
-
in press
-
Voit EO, Almeida J, Marino S, Lall R, Goel G, Neves AR, et al. Regulation of glycolysis in Lactococcus lactis: An unfinished systems biological case study. IEE Proceedings Systems Biology 2006, in press.
-
(2006)
IEE Proceedings Systems Biology
-
-
Voit, E.O.1
Almeida, J.2
Marino, S.3
Lall, R.4
Goel, G.5
Neves, A.R.6
-
28
-
-
0036693728
-
Metabolism of lactic acid bacteria studied by nuclear magnetic resonance
-
Ramos A, Neves AR, Santos H. Metabolism of lactic acid bacteria studied by nuclear magnetic resonance. Antonie Van Leeuwenhoek 2002;82:249-261.
-
(2002)
Antonie Van Leeuwenhoek
, vol.82
, pp. 249-261
-
-
Ramos, A.1
Neves, A.R.2
Santos, H.3
-
29
-
-
0033587788
-
In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis
-
Neves AR, Ramos A, Nunes MC, Kleerebezem M, Hugenholtz J, de Vos WM, et al. In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis. Biotechnol Bioeng 1999;64:200-212.
-
(1999)
Biotechnol Bioeng
, vol.64
, pp. 200-212
-
-
Neves, A.R.1
Ramos, A.2
Nunes, M.C.3
Kleerebezem, M.4
Hugenholtz, J.5
de Vos, W.M.6
-
31
-
-
5344243150
-
The dawn of a new era of metabolic systems analysis
-
Voit EO. The dawn of a new era of metabolic systems analysis. Drug Discovery Today BioSilico 2004;2:182-189.
-
(2004)
Drug Discovery Today BioSilico
, vol.2
, pp. 182-189
-
-
Voit, E.O.1
-
32
-
-
4444351989
-
Decoupling dynamical systems for pathway identification from metabolic profiles
-
Voit EO, Almeida J. Decoupling dynamical systems for pathway identification from metabolic profiles. Bioinformatics, 2004;20:1670-1681.
-
(2004)
Bioinformatics
, vol.20
, pp. 1670-1681
-
-
Voit, E.O.1
Almeida, J.2
-
34
-
-
33749340654
-
Parameter estimation in biochemical systems models with alternate regression
-
Chou I-C, Martens H, Voit EO. Parameter estimation in biochemical systems models with alternate regression. Theor Biol Med Model 2006;3:25.
-
(2006)
Theor Biol Med Model
, vol.3
, pp. 25
-
-
Chou, I.-C.1
Martens, H.2
Voit, E.O.3
-
35
-
-
0029118323
-
Comparative characterization of the fermentation pathway of Saccharomyces cerevisiae using biochemical systems theory and metabolic control analysis. Model definition and nomenclature
-
Curto R, Sorribas A, Cascante M. Comparative characterization of the fermentation pathway of Saccharomyces cerevisiae using biochemical systems theory and metabolic control analysis. Model definition and nomenclature. Math Biosci 1995;130:25-50.
-
(1995)
Math Biosci
, vol.130
, pp. 25-50
-
-
Curto, R.1
Sorribas, A.2
Cascante, M.3
-
36
-
-
0032554663
-
Buffering in models of integrated bio.chemical systems
-
Voit EO, Ferreira AEN. Buffering in models of integrated bio.chemical systems. J Theor Biol 1998;191:429-438.
-
(1998)
J Theor Biol
, vol.191
, pp. 429-438
-
-
Voit, E.O.1
Ferreira, A.E.N.2
-
37
-
-
33748511015
-
An automated procedure for the extraction.of metabolic network information from time series data
-
in press
-
Marino S, Voit EO. An automated procedure for the extraction.of metabolic network information from time series data. J Bioinform Comp Biol 2006, in press.
-
(2006)
J Bioinform Comp Biol
-
-
Marino, S.1
Voit, E.O.2
-
38
-
-
22144473357
-
Challenges for the identification of biological systems from in vivo time series data
-
Voit EO, Marino S, Lall R. Challenges for the identification of biological systems from in vivo time series data. In Silico Biol 2004;5:83-92.
-
(2004)
In Silico Biol
, vol.5
, pp. 83-92
-
-
Voit, E.O.1
Marino, S.2
Lall, R.3
-
42
-
-
84867583531
-
-
http://helios.brs.kyushu-u.ac.jp/~bestkit/.
-
-
-
-
43
-
-
17844397967
-
CADLIVE dynamic simulator: Direct link of biochemical networks to dynamic models
-
Kurata H, Masaki K, Sumida Y, Iwasaki R. CADLIVE dynamic simulator: Direct link of biochemical networks to dynamic models. Genome Res 2005;15:590-600.
-
(2005)
Genome Res
, vol.15
, pp. 590-600
-
-
Kurata, H.1
Masaki, K.2
Sumida, Y.3
Iwasaki, R.4
-
44
-
-
84867622416
-
-
Master's Thesis In Bioengineering, Georgia Institute of Technology: Atlanta
-
Goel G. Biochemical Systems Toolbox. Master's Thesis in Bioengineering. 2006, Georgia Institute of Technology: Atlanta. p. 136.
-
(2006)
Biochemical Systems Toolbox
, pp. 136
-
-
Goel, G.1
-
45
-
-
0017134223
-
Purification and properties of pyruvate kinase from Streptococcus lactis
-
Crow VL, Pritchard GG. Purification and properties of pyruvate kinase from Streptococcus lactis. Biochim Biophys Acta 1976;438:90-101.
-
(1976)
Biochim Biophys Acta
, vol.438
, pp. 90-101
-
-
Crow, V.L.1
Pritchard, G.G.2
-
46
-
-
0019476463
-
The importance of inorganic phosphate in regulation of energy metabolism in Streptococcus lactis
-
Mason PW, Carbone DP, Cushman RA, Waggoner AS. The importance of inorganic phosphate in regulation of energy metabolism in Streptococcus lactis. J Biol Chem 1981;256:1861-1866.
-
(1981)
J Biol Chem
, vol.256
, pp. 1861-1866
-
-
Mason, P.W.1
Carbone, D.P.2
Cushman, R.A.3
Waggoner, A.S.4
-
47
-
-
0025400371
-
Fermentation pathway kinetics and metabolic flux control in suspended and immobilized Saccharomyces cerevisiae
-
Galazzo JL, Bailey JE. Fermentation pathway kinetics and metabolic flux control in suspended and immobilized Saccharomyces cerevisiae. Enzyme Microb Technol 1990;12:162-172.
-
(1990)
Enzyme Microb Technol
, vol.12
, pp. 162-172
-
-
Galazzo, J.L.1
Bailey, J.E.2
-
48
-
-
15244353650
-
Improved methods for the mathematically controlled comparison of biochemical systems
-
Schwacke JH, Voit EO. Improved methods for the mathematically controlled comparison of biochemical systems. Theor Biol Med Model 2004;1(1):1.
-
(2004)
Theor Biol Med Model
, vol.1
, Issue.1
, pp. 1
-
-
Schwacke, J.H.1
Voit, E.O.2
-
49
-
-
31144466208
-
Smooth bistable S-systems
-
Voit EO. Smooth bistable S-systems. IEE Proc Systems Biol 2005;15:207-213.
-
(2005)
IEE Proc Systems Biol
, vol.15
, pp. 207-213
-
-
Voit, E.O.1
-
55
-
-
0037461033
-
Dynamic modeling of genetic networks using genetic algorithm and S-system
-
Kikuchi S, Tominaga D, Arita M, Takahashi K, Tomita M. Dynamic modeling of genetic networks using genetic algorithm and S-system. Bioinformatics 2003;19:643-650.
-
(2003)
Bioinformatics
, vol.19
, pp. 643-650
-
-
Kikuchi, S.1
Tominaga, D.2
Arita, M.3
Takahashi, K.4
Tomita, M.5
-
57
-
-
20144387371
-
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm
-
Kimura S, Kashihara A, Kano M, Hatakeyama M, Masui R, Nakagawa N, et al. Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. Bioinformatics, 2005;21:1154-1163.
-
(2005)
Bioinformatics
, vol.21
, pp. 1154-1163
-
-
Kimura, S.1
Kashihara, A.2
Kano, M.3
Hatakeyama, M.4
Masui, R.5
Nakagawa, N.6
-
59
-
-
5444229328
-
1α,25(OH)2D3 regulation of integrin expression is substrate dependent
-
Raz P, Lohmann CH, Turner J, Wang L, Poythress N, Blanchard C, et al. 1α,25(OH)2D3 regulation of integrin expression is substrate dependent. J Biomed Mat Res. 2004;71:217-225.
-
(2004)
J Biomed Mat Res
, vol.71
, pp. 217-225
-
-
Raz, P.1
Lohmann, C.H.2
Turner, J.3
Wang, L.4
Poythress, N.5
Blanchard, C.6
|