-
1
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein J (1981) Evolutionary trees from DNA sequences: A maximum likelihood approach. J Mol Evol 17: 368-376.
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
2
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard J, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.1
Stephens, M.2
Donnelly, P.3
-
3
-
-
0842288337
-
Inferring cellular networks using probabilistic graphical models
-
Friedman N (2004) Inferring cellular networks using probabilistic graphical models. Science 303: 799-805.
-
(2004)
Science
, vol.303
, pp. 799-805
-
-
Friedman, N.1
-
4
-
-
3242662380
-
MotifPrototyper: A profile Bayesian model for motif family
-
Xing EP, Karp RM (2004) MotifPrototyper: A profile Bayesian model for motif family. Proc Natl Acad Sci U S A 101: 10523-10528.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 10523-10528
-
-
Xing, E.P.1
Karp, R.M.2
-
11
-
-
0002629270
-
Maximum likelihood from incomplete data via the EM algorithm
-
J R Stat Soc
-
Dempster A, Laird N, Rubin D (1977) Maximum likelihood from incomplete data via the EM algorithm. J R Stat Soc [Series B] 39: 1-38.
-
(1977)
Series B
, vol.39
, pp. 1-38
-
-
Dempster, A.1
Laird, N.2
Rubin, D.3
-
14
-
-
0006407254
-
WinBUGS: A Bayesian modeling framework: Concepts, structure and extensibility
-
Available:, Accessed 8 November 2007
-
Lunn DJ, Thomas A, Best NG, Spiegelhalter DJ (2000) WinBUGS: A Bayesian modeling framework: Concepts, structure and extensibility. Statistics and Computing 10: 321-333. Available: http://www.mrc-bsu.cam.ac.uk/bugs/. Accessed 8 November 2007.
-
(2000)
Statistics and Computing
, vol.10
, pp. 321-333
-
-
Lunn, D.J.1
Thomas, A.2
Best, N.G.3
Spiegelhalter, D.J.4
-
15
-
-
84898991735
-
VIBES: A variational inference engine for Bayesian networks
-
Becker S, Thrun S, Obermayer K, editors, Cambridge Massachusetts, MIT Press. pp, Available:, Accessed 8 November 2007
-
Bishop C, Spiegelhalter D, Winn J (2003) VIBES: A variational inference engine for Bayesian networks. In: Becker S, Thrun S, Obermayer K, editors. Advances in neural information processing systems 15. Cambridge (Massachusetts): MIT Press. pp. 777-784. Available: http://vibes.sourceforge.net/. Accessed 8 November 2007.
-
(2003)
Advances in neural information processing systems
, vol.15
, pp. 777-784
-
-
Bishop, C.1
Spiegelhalter, D.2
Winn, J.3
-
16
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The gene ontology consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: Tool for the unification of biology. The gene ontology consortium. Nat Genet 25: 25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
17
-
-
12344269924
-
GO::TermFinder - Open source software for accessing Gene Ontology terms associated with a list of genes
-
Boyle EI, Weng S, Gollub J, Jin H, Botstein D, et al. (2004) GO::TermFinder - Open source software for accessing Gene Ontology terms associated with a list of genes. Bioinformatics 20: 3710-3715.
-
(2004)
Bioinformatics
, vol.20
, pp. 3710-3715
-
-
Boyle, E.I.1
Weng, S.2
Gollub, J.3
Jin, H.4
Botstein, D.5
-
18
-
-
33748513704
-
Finding function: An evaluation framework for functional genomics
-
Myers CL, Barret DA, Hibbs MA, Huttenhower C, Troyanskaya OG (2006) Finding function: An evaluation framework for functional genomics. BMC Genomics 7: 187.
-
(2006)
BMC Genomics
, vol.7
, pp. 187
-
-
Myers, C.L.1
Barret, D.A.2
Hibbs, M.A.3
Huttenhower, C.4
Troyanskaya, O.G.5
-
19
-
-
33845394419
-
A mutagenetic tree hidden Markov model for longitudinal clonal HIV sequence data
-
Beerenwinkel N, Drton M (2007) A mutagenetic tree hidden Markov model for longitudinal clonal HIV sequence data. Biostatistics 8: 53-71.
-
(2007)
Biostatistics
, vol.8
, pp. 53-71
-
-
Beerenwinkel, N.1
Drton, M.2
-
20
-
-
0030034795
-
A hidden Markov model approach to variation among sites in rate of evolution
-
Felsenstein J, Churchill GA (1996) A hidden Markov model approach to variation among sites in rate of evolution. Mol Biol Evol 13: 93-104.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 93-104
-
-
Felsenstein, J.1
Churchill, G.A.2
-
21
-
-
4444311171
-
Multiple-sequence functional annotation and the generalized hidden Markov phylogeny
-
McAuliffe JD, Pachter L, Jordan MI (2004) Multiple-sequence functional annotation and the generalized hidden Markov phylogeny. Bioinformatics 20: 1850-1860.
-
(2004)
Bioinformatics
, vol.20
, pp. 1850-1860
-
-
McAuliffe, J.D.1
Pachter, L.2
Jordan, M.I.3
-
22
-
-
1542537849
-
Combining phylogenetic and hidden Markov models in biosequence analysis
-
Siepel A, Haussler D (2004) Combining phylogenetic and hidden Markov models in biosequence analysis. J Comput Biol 11: 413-428.
-
(2004)
J Comput Biol
, vol.11
, pp. 413-428
-
-
Siepel, A.1
Haussler, D.2
-
24
-
-
2442446708
-
Genome-wide discovery of transcriptional modules from dna sequence and gene expression
-
Segal E, Yelensky R, Koller D (2003) Genome-wide discovery of transcriptional modules from dna sequence and gene expression. Bioinformatics 19 (Supplement 1): i273-282.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL.EMENT 1
-
-
Segal, E.1
Yelensky, R.2
Koller, D.3
-
25
-
-
1942453302
-
Predicting gene expression from sequence
-
Beer MA, Tavazoie S (2004) Predicting gene expression from sequence. Cell 117: 185-198.
-
(2004)
Cell
, vol.117
, pp. 185-198
-
-
Beer, M.A.1
Tavazoie, S.2
-
26
-
-
0035949684
-
Predicting the clinical status of human breast cancer by using gene expression profiles
-
West M, Blanchette C, Dressman H, Huang E, Ishida S, et al. (2001) Predicting the clinical status of human breast cancer by using gene expression profiles. Proc Natl Acad Sci U S A 98: 11462-11467.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 11462-11467
-
-
West, M.1
Blanchette, C.2
Dressman, H.3
Huang, E.4
Ishida, S.5
-
27
-
-
33645782918
-
Statistical modeling of biomedical corpora: Mining the Caenorhabditis genetic center bibliography for genes related to life span
-
Blei DM, Franks K, Jordan MI, Mian IS (2006) Statistical modeling of biomedical corpora: Mining the Caenorhabditis genetic center bibliography for genes related to life span. BMC Bioinformatics 7: 250.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 250
-
-
Blei, D.M.1
Franks, K.2
Jordan, M.I.3
Mian, I.S.4
-
28
-
-
12344310192
-
Accurate detection of aneuploidies in array CGH and gene expression microarray data
-
Myers CL, Dunham MJ, Kung SY, Troyanskaya OG (2004) Accurate detection of aneuploidies in array CGH and gene expression microarray data. Bioinformatics 20: 3533-3543.
-
(2004)
Bioinformatics
, vol.20
, pp. 3533-3543
-
-
Myers, C.L.1
Dunham, M.J.2
Kung, S.Y.3
Troyanskaya, O.G.4
-
29
-
-
34547844126
-
Modeling recurrent DNA copy number alterations in array CGH data
-
Shah SP, Lam WL, Ng RT, Murphy KP (2007) Modeling recurrent DNA copy number alterations in array CGH data. Bioinformatics 23: i450-i458.
-
(2007)
Bioinformatics
, vol.23
-
-
Shah, S.P.1
Lam, W.L.2
Ng, R.T.3
Murphy, K.P.4
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