Polyphyly across oceans: A molecular phylogeny of the Chromodorididae (Mollusca, Nudibranchia)

Zoologica Scripta

Volumn 37, Issue 1, 2008, Pages 23-42

  Turner, Lucy M ^a,b   Wilson, Nerida G ^c  

^a THE LABORATORY   (United Kingdom)

^b UNIVERSITY OF BRISTOL   (United Kingdom)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CADLINA; CADLINELLA; CHROMODORIDIDAE; CHROMODORIS; DIGIDENTIS; DIVERSIDORIS; GLOSSODORIS; HALICLONA; HYPSELODORIS; MEXICHROMIS; MOLLUSCA; NUDIBRANCHIA; OPISTHOBRANCHIA; PECTENODORIS; TYRINNA;

EID: 37849005728     PISSN: 03003256     EISSN: 14636409     Source Type: Journal    
DOI: 10.1111/j.1463-6409.2007.00310.x     Document Type: Article

References (90)

1. Alejandrino, A. Valdés, A. (2006). Phylogeny and biogeography of the Atlantic and eastern Pacific Hypselodoris Stimpson, 1855 (Nudibranchia, Chromodorididae) with the description of a new species from the Caribbean Sea. Journal of Molluscan Studies, 72, 189 198.
2. Avern, G. J. (1986). The biology of the nudibranch Noumea haliclona (Burn, 1957) (Family Chromodorididae). M.Sc. Sydney:University of Sydney.
3. Avila, C. (1995). Natural products of opisthobranch molluscs: a biological review. Oceanography and Marine Biology an Annual Review, 33, 487 559.
4. Bergh, L. S. R. (1891). Die cryptobranchiaten Dorididen. Zoologische Jahrbücher, 6, 103 144.
5. Bertsch, H. (1977). The Chromodoridinae nudibranchs from the Pacific coast of America - Part I. Investigative methods and supra-specific taxonomy. Veliger, 20, 107 118.
6. Bertsch, H. (1978a). The Chromodoridinae nudibranchs from the Pacific coast of America - Part II. The genus Chromodoris. Veliger, 20, 307 327.
7. Bertsch, H. (1978b). The Chromodoridinae nudibranchs from the Pacific coast of America - Part III. The genera Chromolaichma and Mexichromis. Veliger, 21, 70 86.
8. Bertsch, H. (1978c). The Chromodoridinae nudibranchs from the Pacific coast of America - Part IV. The genus Hypselodoris. Veliger, 21, 236 250.
9. Boss, K. J. (1982). Mollusca. In S. P. Parker (Ed.) Synopsis and Classification of Living Organisms (pp. 945 1166). New York:McGraw-Hill.
10. Briggs, J. C. (2003). Marine centres of origin as evolutionary engines. Journal of Biogeography, 30, 1 18.
11. Burn, R. (1966). On three new Chromodoridinae from Australia (Opisthobranchia: Nudibranchia). Veliger, 8, 191 197.
12. Burton, R. S. (1998). Intraspecific phylogeography across the Point Conception biogeographic boundary. Evolution, 52, 734 745.
13. Cimino, G. Ghiselin, M. (1999). Chemical defense and evolutionary trends in biosynthetic capacity among dorid nudibranchs. Chemoecology, 9, 187 207.
14. Collin, R. (2003). Phylogenetic relationships among calyptraeid gastropods and their implications for the biogeography of marine speciation. Systematic Biology, 52, 618 640.
15. Cunningham, C. W. (1997). Can three incongruence tests predict when data should be combined? Molecular Biology and Evolution, 14, 733 740.
16. Domínguez, M., García, F. J. Troncoso, J. S. (2006). Some aspects of the family Chromodorididae (Opisthobranchia: Nudibranchia) from Brazil, with description of a new species. Scientia Marina, 70, 621 634.
17. Dorgan, K. M., Valdés, A. Gosliner, T. M. (2002). Phylogenetic systematics of the genus Platydoris (Mollusca, Nudibranhcia, Doridoidea) with descriptions of six new species. Zoologica Scripta, 31, 271 319.
18. Edmunds, M. (1971). Opisthobranchiate Mollusca from Tanzania. Zoological Journal of the Linnean Society, 50, 339 396.
19. Edmunds, M. (1981). Opisthobranchiate Mollusca from Ghana: Chromodorididae. Zoological Journal of the Linnean Society, 72, 175 201.
20. Eliot, C. N. E. (1910). A Monograph of the British Nudibranch Mollusca. London:Ray Society.
21. Farris, J. S., Källersjö, M., Kluge, A. G. Bult, C. (1994). Testing significance of incongruence. Cladistics, 10, 315 319.
22. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783 791.
23. Folmer, O., Black, M., Hoen, W., Lutz, R. Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294 299.
24. Fontana, A., Muniain, C. Cimino, G. (1998). First chemical study of patagonian nudibranchs: a new seco-11, 12-spongiane, tyrinnal, from the defensive organs of Tyrinna nobilis. Journal of Natural Products, 61, 1027 1029.
25. Fukami, H., Budd, A. F., Paulay, G., Solé-Cava, A. M., Chen, C. A., Iwao, K. Knowlton, N. (2004). Conventional taxonomy obscures deep divergence between Pacific and Atlantic corals. Nature, 427, 832 835.
26. Garovoy, J. B., Valdés, A. Gosliner, T. M. (2001). Phylogeny of the genus Rostanga (Nudibranchia), with descriptions of three new species from South Africa. Journal of Molluscan Studies, 67, 131 144.
27. Gavagnin, M. G. Fontana, A. (2000). Diterpenes from marine opisthobranch molluscs. Current Organic Chemistry, 4, 1201 1248.
28. Giménez-Casalduero, F., Thacker, R. W. Paul, V. J. (1999). Association of colour and feeding deterrence by tropical reef fishes. Chemoecology, 9, 33 39.
29. Gosliner, T. M. (1996). Phylogeny of Ceratosoma (Nudibranchia: Chromodorididae), with descriptions of two new species. Proceedings of the California Academy of Sciences, 49, 115 126.
30. Gosliner, T. M. Draheim, R. (1996). Indo-Pacific opisthobranch gastropod biogeography: how do we know what we don't know? American Malacological Bulletin, 12, 37 43.
31. Gosliner, T. M. Johnson, S. (1994). Review of the genus Hallaxa (Nudibranchia: Actinocyclidae) with descriptions of nine new species. Veliger, 37, 155 191.
32. Gosliner, T. M. Johnson, R. F. (1999). Phylogeny of Hypselodoris (Nudibranchia: Chromodorididae) with a review of the monophyletic clade of Indo-Pacific species, including descriptions of twelve new species. Zoological Journal of the Linnean Society, 125, 1 114.
33. Grande, C., Templado, J., Cervera, J. L. Zardoya, R. (2004a). Molecular phylogeny of Euthyneura (Mollusca: Gastropoda). Molecular Biology and Evolution, 21, 303 313.
34. Grande, C., Templado, J., Cervera, J. L. Zardoya, R. (2004b). Phylogenetic relationships among Opisthobranchia (Mollusca: Gastropoda) based on mitochondrial cox1, trnV, and rrnL genes. Molecular Phylogenetics and Evolution, 33, 378 388.
35. Hall, T. A. (1999). Bioedit: a user-friendly biological sequence editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95 98.
36. Hellberg, M. E. (1998). Sympatric sea shells along the sea's shore: the geography of speciation in the marine gastropod Tegula. Evolution, 52, 1311 1324.
37. Huelsenbeck, J. P. Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754 755.
38. Jermiin, L. S. (1997). K2WuLi: a Program to Conduct Relative-Rate Tests from DNA Sequences:No longer available from http://jcsmt.anu.edu.au/dmm/humgen/ lars/k2wulisub.htm.
39. Johnson, R. F. Gosliner, T. M. (1998). The genus Pectenodoris (Nudibranchia: Chromodorididae) from the Indo-Pacific, with the description of a new species. Proceedings of the California Academy of Sciences, 50, 295 306.
40. Johnson, R. F. Valdés, A. (2001). The Hypselodoris infucata, H. obscura and H. saintvincentius species complex (Mollusca, Nudibranchia, Chromodorididae), with remarks on the genus Brachychlanis Ehrenberg, 1831. Journal of Natural History, 35, 1371 1398.
41. Keen, A. M. (1971). Sea Shells of Tropical West America. California:Stanford University Press.
42. Kumar, S., Tamura, K. Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150 163.
43. Marcus, E. (1970). Opisthobranchs from northern Brazil. Bulletin of Marine Science, 24, 922 951.
44. Marcus, E. Marcus, E. (1967). American opisthobranch mollusks. Studies in Tropical Oceanography, University of Miami, 6, 1 256.
45. Mayr, E. (1954). Geographic speciation in tropical echinoids. Evolution, 8, 1 18.
46. Mayr, E. (1970). Populations, Species, and Evolution. Cambridge, MA:Harvard University Press.
47. Medina, M. Walsh, P. J. (2000). Molecular systematics of the order Anapsidea based on mitochondrial DNA sequences (12S, 16S, and COI). Molecular Phylogenetics and Evolution, 15, 41 58.
48. Muniain, C., Valdés, A. Ortea, J. (1996). Redescription of Tyrinna nobilis Bergh, 1898 (Opisthobranchia: Chromodorididae) from Patagonia, Argentina. Journal of Molluscan Studies, 3, 265 273.
49. Odhner. N. H. J. (1968). Systematique. In P. Grassé (Ed.) Sous-Classe Des Opisthobranches, Traité de Zoologie (pp. 834 888). Masson, Paris.
50. Ogden, T. H. Rosenberg, M. S. (2007). How should gaps be treated in parsimony? A comparison of approaches using simulation. Molecular Phylogenetics and Evolution, 42, 817 826.
51. Ortea, J., Valdés, A. Garcia-Gomez, J. C. (1996). Revision de las especies atlantica de la familia Chromodorididae (Mollusca: Nudibranchia) del grupo cromatico azul. Avicennia supplement, 1, 1 160.
52. Palumbi, S., Martin, A., Romano, S., McMillan, W. O., Stice, L. Grabowski, G. (1991). The simple fool's guide to PCR, Version 2.0. Hawaii:Department of Zoology and Kewalo Marine Laboratory, University of Hawaii.
53. Posada, D. (2005). Modeltest, Version 3.7 documentation. Available via http://darwin.uvigo.es/software/modeltest.html.
54. Posada, D. Crandall, K. A. (1998). Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
55. Rambaut, A. (1996). Se-Al: Sequence Alignment Editor. Available via http://evolve.zoo.ox.ac.uk.
56. Rambaut, A. Drummond, A (2005). Tracer: MCMC Trace Analaysis Tool. 1.3. University of Oxford, UK.
57. Ros, J. (1975). Opistobranquios (Gastropoda: Euthyneura) del litoral ibérico. Investigación Pesquera, 39, 269 372.
58. Rudman, W. B. (1984). The Chromodorididae (Opisthobranchia: Mollusca) of the Indo-West Pacific: a review of the genera. Zoological Journal of the Linnean Society, 81, 115 273.
59. Rudman, W. B. (1985). The Chromodorididae (Opisthobranchia: Mollusca) of the Indo-West Pacific: Chromodoris aureomarginata, C. verrieri and C. fidelis colour groups. Zoological Journal of the Linnean Society, 83, 241 299.
60. Rudman, W. B. (1987). The Chromodorididae (Opisthobranchia: Mollusca) of the Indo-West Pacific: Chromodoris epicura, C. aureopurpurea, C. annulata, C. coi, and Risbecia tryoni colour groups. Zoological Journal of the Linnean Society, 90, 305 407.
61. Rudman, W. B. (1990). The Chromodorididae (Opisthobranchia: Mollusca) of the Indo-West Pacific: further species of Glossodoris, Thorunna and the Chromodoris aureomarginata colour group. Zoological Journal of the Linnean Society, 100, 263 326.
62. Rudman, W. B. (1991). Purpose in pattern: the evolution of colour in chromodorid nudibranchs. Journal of Molluscan Studies (Suppl.). T.E. Thompson Memorial Issue, 57, 5 21.
63. Rudman, W. B. (2003). (May 22). Glossodoris edmundsi and G. ghanensis. Available via http://www.seaslugforum.net/find.cfm?id=10008.
64. Rudman, W. B. Bergquist, P. R. (2007). A review of feeding specificity in the sponge-feeding Chromodorididae (Mollusca: Nudibranchia). Molluscan Research, 27, 60 88.
65. Rudman, W. B. Darvell, B. W. (1990). Opisthobranch molluscs of Hong Kong: Part 1. Goniodorididae, Onchidorididae, Triophidae, Gymnodorididae, Chromodorididae (Nudibranchia). Asian Marine Biology, 7, 31 79.
66. Sarich, V. M. Wilson, A. C. (1967). Immunological time scale for hominid evolution. Science, 158, 1200 1203.
67. Schrödl, M. (2000). Revision of the nudibranch genus Cadlina (Gastropoda: Opisthobranchia) from the southern Ocean. Journal of the Marine Biology Association of the U.K., 80, 299 309.
68. Schrödl, M. Millen, S. V. (2001). Revision of the nudibranch gastropod genus Tyrinna Bergh, 1898 (Doridoidea: Chromodorididae). Journal of Natural History, 35, 1143 1171.
69. Sokolov, E. P. (2000). An improved method for DNA isolation from mucopolysaccharide-rich molluscan tissues. Journal of Molluscan Studies, 66, 573 575.
70. Swofford, D. L. (2002). paup*, Version 4b10. Sunderland, Massachusetts:Sinauer Associates Inc.
71. Thiele, J. (1931). Handbuch der Systematischen Weichtierkunde. Jena 1 (2 Fischer.
72. Thollesson, M. (1999). Phylogenetic analysis of dorid nudibranchs (Gastropoda: Doridacea) using the mitochondrial 16s rRNA gene. Journal of Molluscan Studies, 65, 335 353.
73. Thollesson, M. (2000). Increasing fidelity in parsimony analysis of dorid nudibranchs by differential weighting, or a tale of two genes. Molecular Phylogenetics and Evolution, 16, 161 172.
74. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. Higgens, D. G. (1997). The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876 4882.
75. Valdés, A. (2001). Depth-related adaptations, speciation processes and evolution of colour in the genus Phyllidiopsis (Mollusca: Nudibranchia). Marine Biology, 139, 485 496.
76. Valdés, A. (2002). A phylogenetic analysis and systematic revision of the cryptobranch dorids (Mollusca, Nudibranchia, Anthobranchia). Zoological Journal of the Linnean Society, 136, 535 636.
77. Valdés, A. (2003). Preliminary molecular phylogeny of the radula-less dorids (Gastropoda: Opisthobranchia), based on 16S MTDNA sequence data. Journal of Molluscan Studies, 69, 75 80.
78. Valdés, A. Afonso, C. M. L. (2003). Synonymy of Cadlina burnayi Ortea, 1988, from the Cape Verde Islands (Opisthobranchia: Chromodorididae) with Tyrinna evelinae (Marcus, 1958). Veliger, 46, 176 185.
79. Valdés, A. Campillo, O. J. (2000). Redescription and reassessment of Cadlina luarna (Ev. Marcus and Er. Marcus, 1967) comb. nov. (Mollusca, Opisthobranchia, Doridina). Proceedings of the California Academy of Sciences, 52, 77 85.
80. Valdés, A. Gosliner, T. M. (1999). Reassessment of the systematic status of Miamira Bergh, 1875 and Orodoris Bergh, 1875 (Nudibranchia: Chromodorididae) in light of phylogenetic analysis. Journal of Molluscan Studies, 65, 33 45.
81. Vaught, K. C. (1989). A Classification of the Living Mollusca. Florida:American Malacologists, Inc.
82. Wägele, H., Ballesteros, M. Avila, C. (2006). Defensive glandular structures in opisthobranch molluscs - from histology to ecology. Oceanography and Marine Biology: An Annual Review, 44, 197 276.
83. Wägele, H., Vonnemann, V. Wägele, W. (2003). Toward a phylogeny of the Opisthobranchia. In C. Lydeard D. R. Lindberg (Eds) Molecular Systematics and Phylogeography of Mollusks (pp. 185 228). Washington and London:Smithsonian Books.
84. Wilson, N. G. Healy, J. M. (2002). Is Cadlinella ornatissima a chromodorid? Sperm ultrastructure in an enigmatic nudibranch (Opisthobranchia, Mollusca). Invertebrate Reproduction and Development, 42, 179 188.
85. Wilson, N. G. Healy, J. M. (2006). Basal chromodoridid sperm ultrastructure (Mollusca, Gastropoda, Nudibranchia). Zoomorphology, 125, 99 107.
86. Wilson, N. G. Lee, M. S. Y. (2005). Molecular phylogeny of Chromodoris (Mollusca, Nudibranchia) and the identification of a planar spawning clade. Molecular Phylogenetics and Evolution, 36, 722 727.
87. Wollscheid, E. Wägele, H. (1999). Initial results on the molecular phylogeny of the Nudibranchia (Gastropoda, Opisthobranchia) based on 18S rDNA data. Molecular Phylogenetics and Evolution, 13, 215 226.
88. Wollscheid-Lengeling, E., Boore, J., Brown, W. Wägele, H. (2001). The phylogeny of Nudibranchia (Opisthobranchia, Gastropoda, Mollusca) reconstructed by three molecular markers. Organisms Diversity and Evolution, 1, 241 256.
89. Xia, X. Xie, Z. (2001). DAMBE: Data analysis in molecular biology and evolution. Journal of Heredity, 92, 371 373.
90. Xia, X., Xie, Z., Salemi, M., Chen, L. Wang, Y. (2003). An index of substitution saturation and its application. Molecular Phylogenetics and Evolution, 26, 1 7.