메뉴 건너뛰기




Volumn 5, Issue 1, 2008, Pages 69-74

A proteome chip approach reveals new DNA damage recognition activities in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEOPROTEIN; PROTEIN YBAZ; PROTEIN YBCN; UNCLASSIFIED DRUG;

EID: 37749048465     PISSN: 15487091     EISSN: 15491676     Source Type: Journal    
DOI: 10.1038/nmeth1148     Document Type: Article
Times cited : (108)

References (36)
  • 1
    • 0035860499 scopus 로고    scopus 로고
    • Global analysis of protein activities using prateome chips
    • Zhu, H. et al. Global analysis of protein activities using prateome chips. Science 293, 2101-2105 (2001).
    • (2001) Science , vol.293 , pp. 2101-2105
    • Zhu, H.1
  • 2
    • 0034622925 scopus 로고    scopus 로고
    • Printing proteins as microarrays for high-throughput function determination
    • MacBeath, G. & Schreiber, S.L. Printing proteins as microarrays for high-throughput function determination. Science 289, 1760-1763 (2000).
    • (2000) Science , vol.289 , pp. 1760-1763
    • MacBeath, G.1    Schreiber, S.L.2
  • 4
    • 0346753808 scopus 로고    scopus 로고
    • Analyzing antibody specificity with whole proteome microarrays
    • Michaud, G.A. et al. Analyzing antibody specificity with whole proteome microarrays. Nat. Biotechnol. 21, 1509-1512 (2003).
    • (2003) Nat. Biotechnol , vol.21 , pp. 1509-1512
    • Michaud, G.A.1
  • 5
    • 28444478789 scopus 로고    scopus 로고
    • Biochemical and genetic analysis of the yeast proteome with a movable ORF collection
    • Gelperin, D.M. et al. Biochemical and genetic analysis of the yeast proteome with a movable ORF collection. Genes Dev. 19, 2816-2826 (2005).
    • (2005) Genes Dev , vol.19 , pp. 2816-2826
    • Gelperin, D.M.1
  • 6
    • 1542330702 scopus 로고    scopus 로고
    • P-15 cell-binding domain derived from collagen: Analysis of MG63 osteoblastic-cell response by means of a microarray technology
    • Carinci, F. et al. P-15 cell-binding domain derived from collagen: analysis of MG63 osteoblastic-cell response by means of a microarray technology. J. Periodontol. 75, 66-83 (2004).
    • (2004) J. Periodontol , vol.75 , pp. 66-83
    • Carinci, F.1
  • 7
    • 0036846034 scopus 로고    scopus 로고
    • A protein-domain microarray identifies novel protein-protein interactions
    • Espejo, A., Cote, J., Bednarek, A., Richard, S. & Bedford, M.T. A protein-domain microarray identifies novel protein-protein interactions. Biochem. J. 367, 697-702 (2002).
    • (2002) Biochem. J , vol.367 , pp. 697-702
    • Espejo, A.1    Cote, J.2    Bednarek, A.3    Richard, S.4    Bedford, M.T.5
  • 8
    • 2442693027 scopus 로고    scopus 로고
    • A nonredundant human protein chip for antibody screening and serum profiling
    • Lueking, A. et al. A nonredundant human protein chip for antibody screening and serum profiling. Mol. Cell. Proteomics 2, 1342-1349 (2003).
    • (2003) Mol. Cell. Proteomics , vol.2 , pp. 1342-1349
    • Lueking, A.1
  • 9
    • 0034651008 scopus 로고    scopus 로고
    • Ge, H. UPA, a universal protein array system for quantitative detection of protein-protein, protein-DNA, protein-RNA and probein-ligand interactions. Nucleic Acids Res. 28, e3 (2000).
    • Ge, H. UPA, a universal protein array system for quantitative detection of protein-protein, protein-DNA, protein-RNA and probein-ligand interactions. Nucleic Acids Res. 28, e3 (2000).
  • 10
    • 20044369888 scopus 로고    scopus 로고
    • Profiling the humoral immune response to infection by using proteome microarrays: High-throughput vaccine and diagnostic antigen discovery
    • Davies, D.H. et al. Profiling the humoral immune response to infection by using proteome microarrays: High-throughput vaccine and diagnostic antigen discovery. Proc. Natl. Acad. Sci. USA 102 547-552 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 547-552
    • Davies, D.H.1
  • 11
    • 5644229499 scopus 로고    scopus 로고
    • Regulation of gene expression by a metabolic enzyme
    • Hall, D.A. et al. Regulation of gene expression by a metabolic enzyme. Science 306, 482-484 (2004).
    • (2004) Science , vol.306 , pp. 482-484
    • Hall, D.A.1
  • 12
    • 9344247454 scopus 로고    scopus 로고
    • Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips
    • Huang, J. et al. Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips. Proc. Natl. Acad. Sci. USA 101, 16594-16599 (2004).
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 16594-16599
    • Huang, J.1
  • 13
    • 28444460297 scopus 로고    scopus 로고
    • Global analysis of protein phosphorylation in yeast
    • Ptacek, J. et al. Global analysis of protein phosphorylation in yeast. Nature 438, 679-684 (2005).
    • (2005) Nature , vol.438 , pp. 679-684
    • Ptacek, J.1
  • 14
    • 33646568438 scopus 로고    scopus 로고
    • Kitagawa, M. et al. Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive : unique resources for biological research. DNA Res. 12, 291-299 (2005).
    • Kitagawa, M. et al. Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive : unique resources for biological research. DNA Res. 12, 291-299 (2005).
  • 17
    • 0031149139 scopus 로고    scopus 로고
    • How do DNA repair proteins locate damaged bases in the genome?
    • Verdine, G.L. & Bruner, S.D. How do DNA repair proteins locate damaged bases in the genome? Chem. Biol. 4, 329-334 (1997).
    • (1997) Chem. Biol , vol.4 , pp. 329-334
    • Verdine, G.L.1    Bruner, S.D.2
  • 19
    • 0242608332 scopus 로고    scopus 로고
    • Protein microarrays: Promising tools for proteomic research
    • Templin, M.F. et al. Protein microarrays: Promising tools for proteomic research. Proteomics 3, 2155-2166 (2003).
    • (2003) Proteomics , vol.3 , pp. 2155-2166
    • Templin, M.F.1
  • 20
    • 0033602148 scopus 로고    scopus 로고
    • Identification of a new uracil-DNA glycosylase family by expression cloning using synthetic inhibitors
    • Haushalter, K.A., Stukenberg, P.T., Kirschner, M.W. & Verdine, G.L. Identification of a new uracil-DNA glycosylase family by expression cloning using synthetic inhibitors. Curr. Biol. 9, 174-185 (1999).
    • (1999) Curr. Biol , vol.9 , pp. 174-185
    • Haushalter, K.A.1    Stukenberg, P.T.2    Kirschner, M.W.3    Verdine, G.L.4
  • 21
    • 0036898579 scopus 로고    scopus 로고
    • Protein microarrays and proteomics
    • MacBeath, G. Protein microarrays and proteomics. Nat. Genet 32 Suppl., 526-532 (2002).
    • (2002) Nat. Genet , vol.32 , Issue.SUPPL. , pp. 526-532
    • MacBeath, G.1
  • 22
    • 0034651571 scopus 로고    scopus 로고
    • Protein microchips: Use for immunoassay and enzymatic reactions
    • Arenkov, P. et al. Protein microchips: Use for immunoassay and enzymatic reactions. Anal. Biochem. 278, 123-131 (2000).
    • (2000) Anal. Biochem , vol.278 , pp. 123-131
    • Arenkov, P.1
  • 23
    • 0035883736 scopus 로고    scopus 로고
    • AdoMet-dependent methylation, DNA methyltransferases and base flipping
    • Cheng, X. & Roberts, R.J. AdoMet-dependent methylation, DNA methyltransferases and base flipping. Nucleic Acids Res. 29, 3784-3795 (2001).
    • (2001) Nucleic Acids Res , vol.29 , pp. 3784-3795
    • Cheng, X.1    Roberts, R.J.2
  • 24
    • 0028013240 scopus 로고
    • The flip side of DNA methylation
    • Verdine, G.L. The flip side of DNA methylation. Cell 76, 197-200 (1994).
    • (1994) Cell , vol.76 , pp. 197-200
    • Verdine, G.L.1
  • 26
    • 0030602838 scopus 로고    scopus 로고
    • Structural basis for the excision repair of alkylation-damaged DNA
    • Labahn, J. et al. Structural basis for the excision repair of alkylation-damaged DNA. Cell 86, 321-329 (1996).
    • (1996) Cell , vol.86 , pp. 321-329
    • Labahn, J.1
  • 27
    • 0141676627 scopus 로고    scopus 로고
    • How do DNA repair proteins locate potential base lesions? A chemical crosslinking method to investigate 06-alkylguanine-DNA alkyltransferases
    • Duguid, E.M., Mishina, Y. & He, C. How do DNA repair proteins locate potential base lesions? A chemical crosslinking method to investigate 06-alkylguanine-DNA alkyltransferases. Chem. Biol. 10, 827-835 (2003).
    • (2003) Chem. Biol , vol.10 , pp. 827-835
    • Duguid, E.M.1    Mishina, Y.2    He, C.3
  • 28
    • 27244460359 scopus 로고    scopus 로고
    • Nucleic acid melting by Escherichia coli CspE
    • Phadtare, S. & Severinov, K. Nucleic acid melting by Escherichia coli CspE. Nucleic Acids Res. 33, 5583-5590 (2005).
    • (2005) Nucleic Acids Res , vol.33 , pp. 5583-5590
    • Phadtare, S.1    Severinov, K.2
  • 30
    • 30544449081 scopus 로고    scopus 로고
    • A quantitative protein interaction network for the ErbB receptors using protein microarrays
    • Jones, R.B., Gordus, A., Krall, J.A. & MacBeath, G. A quantitative protein interaction network for the ErbB receptors using protein microarrays. Nature 439, 168-174 (2006).
    • (2006) Nature , vol.439 , pp. 168-174
    • Jones, R.B.1    Gordus, A.2    Krall, J.A.3    MacBeath, G.4
  • 31
    • 33847655582 scopus 로고    scopus 로고
    • RNA-binding proteins that inhibit RNA virus infection
    • Zhu, J. et al. RNA-binding proteins that inhibit RNA virus infection. Proc. Natl. Acad. Sci. USA 104, 3129-3134 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 3129-3134
    • Zhu, J.1
  • 32
    • 22444442096 scopus 로고    scopus 로고
    • Inhibition of 06-methylguanine-DNA methyltransferase by an alkyltransferase-like protein from Escherichia coli
    • Pearson, S.J., Ferguson, J., Santibanez-Koref, M. & Margison, G.P. Inhibition of 06-methylguanine-DNA methyltransferase by an alkyltransferase-like protein from Escherichia coli. Nucleic Acids Res. 33, 3837-3844 (2005).
    • (2005) Nucleic Acids Res , vol.33 , pp. 3837-3844
    • Pearson, S.J.1    Ferguson, J.2    Santibanez-Koref, M.3    Margison, G.P.4
  • 33
    • 33644639463 scopus 로고    scopus 로고
    • Direct reversal of DNA alkylation damage
    • Mishina, Y., Duguid, E.M. & He, C. Direct reversal of DNA alkylation damage. Chem. Rev. 106, 215-232 (2006).
    • (2006) Chem. Rev , vol.106 , pp. 215-232
    • Mishina, Y.1    Duguid, E.M.2    He, C.3
  • 34
    • 0027296616 scopus 로고
    • Double helicase II (uvrD)-helicase IV (helD) deletion mutants are defective in the recombination pathways of Escherichia coli
    • Mendonca, V.M., Kaiser-Rogers, K. & Matson, S.W. Double helicase II (uvrD)-helicase IV (helD) deletion mutants are defective in the recombination pathways of Escherichia coli. J. Bacteriol. 175 4641-4651 (1993).
    • (1993) J. Bacteriol , vol.175 , pp. 4641-4651
    • Mendonca, V.M.1    Kaiser-Rogers, K.2    Matson, S.W.3
  • 35
    • 33749863636 scopus 로고    scopus 로고
    • Protein chip fabrication by capture of nascent polypeptides
    • Tao, S.C. & Zhu, H. Protein chip fabrication by capture of nascent polypeptides. Nat. Biotechnol. 24, 1253-1254 (2006).
    • (2006) Nat. Biotechnol , vol.24 , pp. 1253-1254
    • Tao, S.C.1    Zhu, H.2
  • 36
    • 3042757210 scopus 로고    scopus 로고
    • Self-assembling protein microarrays
    • Ramachandran, N. et al. Self-assembling protein microarrays. Science 305, 86-90 (2004).
    • (2004) Science , vol.305 , pp. 86-90
    • Ramachandran, N.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.