Characterization of degree frequency distribution in protein interaction networks

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 71, Issue 3, 2005, Pages

  Romano, Sebastian A ^a   Eguia, M C ^a  

^a UNIVERSIDAD NACIONAL DE QUILMES   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

GENE-KNOCKOUT EXPERIMENTS; PROTEIN INTERACTION NETWORKS; PROTEIN-PROTEIN INTERACTION; SCALE-FREE NETWORKS;

APPROXIMATION THEORY; DATA REDUCTION; DATABASE SYSTEMS; GENES; MATHEMATICAL MODELS; PERTURBATION TECHNIQUES; ROBUSTNESS (CONTROL SYSTEMS);

PROTEINS;

PROTEIN BINDING; PROTEOME; SACCHAROMYCES CEREVISIAE PROTEIN;

BIOLOGICAL MODEL; COMPUTER SIMULATION; GENE EXPRESSION REGULATION; METABOLISM; MOLECULAR EVOLUTION; PHYSIOLOGY; PROCEDURES; PROTEIN ANALYSIS; PROTEOMICS; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION; STATISTICAL DISTRIBUTION; STATISTICAL MODEL;

COMPUTER SIMULATION; EVOLUTION, MOLECULAR; GENE EXPRESSION REGULATION, FUNGAL; MODELS, BIOLOGICAL; MODELS, STATISTICAL; PROTEIN BINDING; PROTEIN INTERACTION MAPPING; PROTEOME; PROTEOMICS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SIGNAL TRANSDUCTION; STATISTICAL DISTRIBUTIONS;

EID: 37649032630     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.71.031901     Document Type: Article

References (28)

1. R. Albert and A-L. Barabási, Rev. Mod. Phys. 74, 47 (2002).
2. A. Wagner, Proc. R. Soc. London, Ser. B 270, 457 (2003).
3. H. Jeong, S. P. Mason, A.-L. Barabási, and Z. N. Oltvai, Nature (London) 411, 41 (2001).
4. B. Papp, C. Pal, and L. D. Hurst, Nature (London) 429, 661 (2004).
5. M. W. Hahn, G. C. Conant, and A. Wagner, J. Mol. Evol. 58, 203 (2004); H. B. Fraser, D. P. Wall and A. E. Hirsh, BMC Evol. Biol. 3, 11 (2003); I. K. Jordan, Y. I. Wolf, and E. V. Koonin, ibid. 3, 5 (2003).
6. M. W. Hahn, G. C. Conant, and A. Wagner, J. Mol. Evol. 58, 203 (2004); H. B. Fraser, D. P. Wall and A. E. Hirsh, BMC Evol. Biol. 3, 11 (2003); I. K. Jordan, Y. I. Wolf, and E. V. Koonin, ibid. 3, 5 (2003).
7. M. W. Hahn, G. C. Conant, and A. Wagner, J. Mol. Evol. 58, 203 (2004); H. B. Fraser, D. P. Wall and A. E. Hirsh, BMC Evol. Biol. 3, 11 (2003); I. K. Jordan, Y. I. Wolf, and E. V. Koonin, ibid. 3, 5 (2003).
8. E. Eisenberg and E. Y. Levanon, Phys. Rev. Lett. 91, 138701 (2003).
9. P. Uetz et al., Nature (London) 403, 623 (2000); T. Ito et al., Proc. Natl. Acad. Sci. U.S.A. 98, 4569 (2001).
10. P. Uetz et al., Nature (London) 403, 623 (2000); T. Ito et al., Proc. Natl. Acad. Sci. U.S.A. 98, 4569 (2001).
11. Y. Ho et al., Nature (London) 415, 180 (2002); A. C. Gavin et al., ibid. 415, 141 (2002).
12. Y. Ho et al., Nature (London) 415, 180 (2002); A. C. Gavin et al., ibid. 415, 141 (2002).
13. J. S. Bader, A. Chaudhuri, J. M. Rothberg, and J. Chant, Nat. Biotechnol. 22, 78 (2004).
14. R. V. Solé, R. Pastor-Satorras, E. Smith, and T. Kepler, Adv. Complex Syst. 5, 43 (2002); A. Vázquez, A. Flammini, A. Maritan, and A. Vespignani, ComPlexUs 1, 38 (2003); R. Kumar, P. Raghavan, S. Rajagopalan, D. Sivakumar, A. Tomkins and E. Upfal, Proceedings of the 41st IEEE Symposium on Foundations of Computer Science (IEEE, New York, 2000), pp. 57-65.
15. R. V. Solé, R. Pastor-Satorras, E. Smith, and T. Kepler, Adv. Complex Syst. 5, 43 (2002); A. Vázquez, A. Flammini, A. Maritan, and A. Vespignani, ComPlexUs 1, 38 (2003); R. Kumar, P. Raghavan, S. Rajagopalan, D. Sivakumar, A. Tomkins and E. Upfal, Proceedings of the 41st IEEE Symposium on Foundations of Computer Science (IEEE, New York, 2000), pp. 57-65.
16. R. V. Solé, R. Pastor-Satorras, E. Smith, and T. Kepler, Adv. Complex Syst. 5, 43 (2002); A. Vázquez, A. Flammini, A. Maritan, and A. Vespignani, ComPlexUs 1, 38 (2003); R. Kumar, P. Raghavan, S. Rajagopalan, D. Sivakumar, A. Tomkins and E. Upfal, Proceedings of the 41st IEEE Symposium on Foundations of Computer Science (IEEE, New York, 2000), pp. 57-65.
17. J. Kim, P. L. Krapivsky, B. Kahng, and S. Redner, Phys. Rev. E 66, 055101(R) (2002).
18. F. Chung, L. Lu, T. G. Dewey, and D. J. Galas, J. Comput. Biol. 10, 677 (2003).
19. P. L. Krapivsky, S. Redner, and F. Leyvraz, Phys. Rev. Lett. 85, 4629 (2000); P. L. Krapivsky and S. Redner, Phys. Rev. E 63, 066123 (2001).
20. P. L. Krapivsky, S. Redner, and F. Leyvraz, Phys. Rev. Lett. 85, 4629 (2000); P. L. Krapivsky and S. Redner, Phys. Rev. E 63, 066123 (2001).
21. A. Vázquez, Phys. Rev. E 67, 056104 (2003).
22. I. Xenarios et al., Nucleic Acids Res. 30, 303 (2002).
23. S. Li et al., Science 303, 540 (2004).
24. L. Giot et al., Science 302, 1727 (2003).
25. R. Albert, H. Jeong and A.-L. Barabási, Nature (London) 406, 378 (2000).
26. M. E. J. Newman, Phys. Rev. E 64, 016132 (2001).
27. V. Latora and M. Marchiori, Phys. Rev. Lett. 87, 198701 (2001).
28. V. Venkatasubramanian, S. Katare, P. R. Patkar, and F.-p. Mu, Comput. Chem. Eng. 28, 1789 (2004).